Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009563

Physical Location & Seq

Genomic Coordinates Forward (+)

683459 .. 684137

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1006400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCCTCACACGCAGCTCTCGCCTCTTCGCGAGTCCCGGCTAACACCAGGCTTCCCTCCAAGCCCTCCCACTCATTTCCCACCCAATGCTTCTCCAAGAGGCTTGAAGTCGGTGAGTTTTCAGGACTAAGATCAAGTTCATGTGTGACCTATGCAAGCAATGGCAGAGAGCAATCCTTCTTCGATACTGTCGCAGCCCAGCTTACTCCCAAGGTTTTATCTTCCCATATTCATTCATTTCATAAGGCAATATATACAATCTGTTTTGCATTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

CP12 Gp_dh_C Gp_dh_N

Protein Analysis

93

Amino Acids

10.05

Weight (kDa)

9.57

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42970
fragaria_vesca	FvH4_5g25760
malus_domestica	MD06G1006400.v1.1 MD06G1006500.v1.1
prunus_persica	Prupe.5G008000_v2.0.a1 Prupe.5G008000_v2.0.a1
pyrus_communis	pycom06g00570 pycom16g26090
rosa_chinensis	RchiOBHm_Chr7g0216231
rosa_laevigata	RLG00000002589
rosa_multiflora	Rmu_co8396877.1_g000001 Rmu_co8412739.1_g000001 Rmu_sc0003545.1_g000007 Rmu_sc0009152.1_g000005
rosa_roxburghii	Rroxscaffold_3G00243570
rosa_rugosa	Rorug07G0159100.1 Rorug07G0159200
rosa_samantha	Rh7AG296400 Rh7BG288600 Rh7CG316800 Rh7DG299100
rosa_wichuraiana	Rw7G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	2 cut(s)	17, 202
AluI	AGCT	2 cut(s)	17, 202
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	14, 194
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	26, 206
BciT130I	CCWGG	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	38
BisI	GCNGC	2 cut(s)	15, 195
BlsI	GCNGC	2 cut(s)	16, 196
Bme1390I	CCNGG	2 cut(s)	38, 49
BmrFI	CCNGG	2 cut(s)	38, 49
BpuMI	CCSGG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	26, 206
BseYI	CCCAGC	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	131
Bsp68I	TCGCGA	1 cut(s)	31
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	128
BstFNI	CGCG	1 cut(s)	31
BstKTI	GATC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 20
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	36, 47
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	26, 206
BsuRI	GGCC	1 cut(s)	5
BtuMI	TCGCGA	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	157
CviAII	CATG	1 cut(s)	141
CviJI	RGCY	8 cut(s)	5, 17, 41, 52, 64, 103, 197, 202
CviKI_1	RGCY	8 cut(s)	5, 17, 41, 52, 64, 103, 197, 202
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	144
FaiI	YATR	6 cut(s)	142, 153, 228, 243, 253, 255
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	1 cut(s)	140
Fnu4HI	GCNGC	2 cut(s)	15, 195
Fsp4HI	GCNGC	2 cut(s)	15, 195
GluI	GCNGC	2 cut(s)	15, 195
GsaI	CCCAGC	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	1 cut(s)	144
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	125
Hpy188III	TCNNGA	2 cut(s)	30, 123
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	155, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 20
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	131
LpnPI	CCDG	5 cut(s)	34, 51, 61, 108, 212
Lsp1109I	GCAGC	2 cut(s)	26, 206
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	3 cut(s)	18, 172, 213
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	5 cut(s)	16, 34, 67, 76, 93
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	38, 49
MvaI	CCWGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	11, 20
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	16, 196
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	47
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	47
RruI	TCGCGA	1 cut(s)	31
SatI	GCNGC	2 cut(s)	15, 195
Sau3AI	GATC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	2 cut(s)	38, 49
SetI	ASST	4 cut(s)	19, 152, 204, 216
StyD4I	CCNGG	2 cut(s)	36, 47
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	14, 194
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	4 cut(s)	129, 221, 225, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.