Rh7DG299100

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0009563
Physical Location & Seq
Reverse (-)
34174317 .. 34177723
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG299100.1

Sequence Viewer

Length: 1194 bp
ATGTCAGTTTTGGTGCTTAAAATTTTTATTTTCTTTTGTGCATATCAGACTTCAGGATCAGCTCCTGTTAAGGGAGAAACAGTGGCCAAATTGAAGGTGGCTATCAACGGATTTGGACGGATTGGCAGGAACTTTCTCCGATGCTGGCATGGCCGGAAGGATTCACCCCTTGAGGTCATTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCCCACTTGCTGAAATATGATTCTATGCTGGGTACTTTCAAAGCAGATATAAAAATAGTGGACAATGAAACTATCAGTGTTGATGGTAAGCCTGTCAAGGTTGTCTCTAACAGAGATCCCCTGAAGCTTCCATGGGCTGAGATGGGCATTGACATTGTTATTGAGGGAACAGGAGTTTTTGTTGATGGCCCTGGTGCTGGTAAACACATCCAAGCTGGTGCTAAGAAAGTTATCATTACAGCTCCAGCAAAAGGTGCCGATATTCCTACCTATGTTGTAGGAGTAAATGAAAAAGATTATGGCCATAGCGTTGCAGACATTGTGAGCAACGCTTCCTGCACCACAAATTGTCTGGCTCCTTTTGTGAAGGTCCTCGATGAAGAATTCGGTATTGTCAAGGGAACCATGACAACTACTCATTCCTACACTGGAGACCAGAGACTGTTGGATGCTTCACACAGGGACTTGAGGAGAGCAAGGGCAGCAGCACTGAACATAGTGCCTACAAGCACTGGTGCAGCCAAGGCAGTGTCTCTAGTGCTGCCTCAGCTCAAAGGCAAGCTCAATGGCATTGCCCTCCGTGTGCCAACACCTAACGTGTCAGTAGTCGACCTTGTTATTAATGTTGCAAAGAAGGGCATTACAGCAGAAGATGTCAATGGAGCCTTCAGAAAGGCAGCTGATGGGCCACTGAAGGGCATATTGGCAGTGTGTGATGTTCCTCTTGTGTCTGTAGACTTCAGGTGCACCGATGTTTCCTCCACCATTGACTCTTCCTTGACTATGGTCATGGGTGATGATATGGTCAAGGTTGTGGCCTGGTACGACAACGAATGGGGATACAGCCAAAGGGTTGTGGATTTGGCACATTTGGTTGCAAGCAAGTGGCCAGGGACACCAGTAGTGGGAAGCGGAGACCCGTTGGAGGATTTCTGCCAGGATAACCCTGCTGATGAAGAGTGCAAAGTCTATGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200
Pfam Domains
Protein Families
CP12 Gp_dh_C Gp_dh_N

Protein Analysis

397

Amino Acids

42.34

Weight (kDa)

6.4

Isoelectric Point (pI)

19.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 32 - 133 5.1e-31 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 189 - 346 1e-64 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 467
AccI GTMKAC 2 cut(s) 822, 948
AciI CCGC 1 cut(s) 1125
AclWI GGATC 2 cut(s) 64, 323
AcoI YGGCCR 4 cut(s) 84, 151, 514, 1100
AcsI RAATTY 2 cut(s) 21, 596
AcuI CTGAAG 5 cut(s) 36, 356, 865, 926, 937
AfaI GTAC 2 cut(s) 247, 1037
AfiI CCNNNNNNNGG 6 cut(s) 71, 410, 464, 908, 1118, 1138
AflIII ACRYGT 1 cut(s) 810
AgsI TTSAA 2 cut(s) 94, 253
AjnI CCWGG 4 cut(s) 403, 1031, 1102, 1149
AjuI GAANNNNNNNTTGG 2 cut(s) 899, 931
AluBI AGCT 8 cut(s) 62, 340, 428, 455, 763, 775, 893, 1190
AluI AGCT 8 cut(s) 62, 340, 428, 455, 763, 775, 893, 1190
Alw21I GWGCWC 1 cut(s) 962
Alw26I GTCTC 5 cut(s) 322, 639, 646, 750, 1122
Alw44I GTGCAC 1 cut(s) 958
AlwI GGATC 2 cut(s) 64, 323
AlwNI CAGNNNCTG 2 cut(s) 65, 655
AoxI GGCC 7 cut(s) 84, 151, 400, 514, 899, 1029, 1100
ApaLI GTGCAC 1 cut(s) 958
ApeKI GCWGC 5 cut(s) 695, 698, 731, 754, 890
ApoI RAATTY 2 cut(s) 21, 596
AseI ATTAAT 1 cut(s) 834
AspS9I GGNCC 3 cut(s) 401, 583, 899
AsuHPI GGTGA 2 cut(s) 156, 1019
AvaII GGWCC 1 cut(s) 583
BaeGI GKGCMC 1 cut(s) 962
BalI TGGCCA 3 cut(s) 86, 516, 1102
BanI GGYRCC 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 962
BbvCI CCTCAGC 1 cut(s) 759
BbvI GCAGC 5 cut(s) 707, 710, 741, 743, 902
BccI CCATC 4 cut(s) 290, 349, 392, 890
BciT130I CCWGG 4 cut(s) 405, 1033, 1104, 1151
BciVI GTATCC 1 cut(s) 1046
BcoDI GTCTC 5 cut(s) 322, 639, 646, 750, 1122
BfaI CTAG 1 cut(s) 749
BfmI CTRYAG 1 cut(s) 945
BfuI GTATCC 1 cut(s) 1046
BisI GCNGC 5 cut(s) 696, 699, 732, 755, 891
BlsI GCNGC 5 cut(s) 697, 700, 733, 756, 892
Bme1390I CCNGG 4 cut(s) 405, 1033, 1104, 1151
Bme18I GGWCC 1 cut(s) 583
BmgT120I GGNCC 3 cut(s) 401, 583, 899
BmiI GGNNCC 4 cut(s) 469, 570, 616, 877
BmrFI CCNGG 4 cut(s) 405, 1033, 1104, 1151
BmsI GCATC 2 cut(s) 131, 652
BoxI GACNNNNGTC 1 cut(s) 998
BpmI CTGGAG 2 cut(s) 441, 663
Bpu10I CCTNAGC 1 cut(s) 759
BpuEI CTTGAG 2 cut(s) 191, 700
BsaI GGTCTC 2 cut(s) 639, 1122
BsaJI CCNNGG 4 cut(s) 344, 403, 735, 1103
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 378, 408
Bsc4I CCNNNNNNNGG 6 cut(s) 71, 410, 464, 908, 1118, 1138
Bse1I ACTGG 3 cut(s) 646, 730, 1112
Bse3DI GCAATG 1 cut(s) 783
BseBI CCWGG 4 cut(s) 405, 1033, 1104, 1151
BseDI CCNNGG 4 cut(s) 344, 403, 735, 1103
BseGI GGATG 2 cut(s) 420, 667
BseLI CCNNNNNNNGG 6 cut(s) 71, 410, 464, 908, 1118, 1138
BseMI GCAATG 1 cut(s) 783
BseMII CTCAG 2 cut(s) 342, 773
BseNI ACTGG 3 cut(s) 646, 730, 1112
BseRI GAGGAG 1 cut(s) 697
BseSI GKGCMC 1 cut(s) 962
BseXI GCAGC 5 cut(s) 707, 710, 741, 743, 902
BseYI CCCAGC 1 cut(s) 241
BsgI GTGCAG 2 cut(s) 535, 750
BshFI GGCC 7 cut(s) 86, 153, 402, 516, 901, 1031, 1102
BshNI GGYRCC 1 cut(s) 467
BsiHKAI GWGCWC 1 cut(s) 962
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 2 cut(s) 689, 1120
BslI CCNNNNNNNGG 6 cut(s) 71, 410, 464, 908, 1118, 1138
BsmAI GTCTC 5 cut(s) 322, 639, 646, 750, 1122
BsmFI GGGAC 2 cut(s) 689, 1120
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 7 cut(s) 86, 153, 402, 516, 901, 1031, 1102
Bso31I GGTCTC 2 cut(s) 639, 1122
Bsp1286I GDGCHC 1 cut(s) 962
Bsp143I GATC 2 cut(s) 56, 328
Bsp19I CCATGG 1 cut(s) 344
BspACI CCGC 1 cut(s) 1125
BspANI GGCC 7 cut(s) 86, 153, 402, 516, 901, 1031, 1102
BspCNI CTCAG 2 cut(s) 343, 772
BspLI GGNNCC 4 cut(s) 469, 570, 616, 877
BspPI GGATC 2 cut(s) 64, 323
BspT107I GGYRCC 1 cut(s) 467
BspTNI GGTCTC 2 cut(s) 639, 1122
BsrDI GCAATG 1 cut(s) 783
BsrI ACTGG 3 cut(s) 646, 730, 1112
BssECI CCNNGG 4 cut(s) 344, 403, 735, 1103
BssMI GATC 2 cut(s) 56, 328
BssT1I CCWWGG 2 cut(s) 344, 735
Bst2UI CCWGG 4 cut(s) 405, 1033, 1104, 1151
Bst4CI ACNGT 3 cut(s) 82, 194, 657
Bst6I CTCTTC 2 cut(s) 991, 1164
BstAPI GCANNNNNTGC 1 cut(s) 467
BstC8I GCNNGC 3 cut(s) 146, 773, 1093
BstDEI CTNAG 4 cut(s) 351, 435, 759, 1191
BstDSI CCRYGG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 420, 667
BstKTI GATC 2 cut(s) 59, 331
BstMAI GTCTC 5 cut(s) 322, 639, 646, 750, 1122
BstMBI GATC 2 cut(s) 56, 328
BstMWI GCNNNNNNNGC 5 cut(s) 150, 467, 695, 737, 760
BstNI CCWGG 4 cut(s) 405, 1033, 1104, 1151
BstPAI GACNNNNGTC 1 cut(s) 998
BstSCI CCNGG 4 cut(s) 403, 1031, 1102, 1149
BstSFI CTRYAG 1 cut(s) 945
BstSLI GKGCMC 1 cut(s) 962
BstV1I GCAGC 5 cut(s) 707, 710, 741, 743, 902
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuI GTATCC 1 cut(s) 1046
BsuRI GGCC 7 cut(s) 86, 153, 402, 516, 901, 1031, 1102
BtgI CCRYGG 1 cut(s) 344
BtsCI GGATG 2 cut(s) 420, 667
BtsI GCAGTG 2 cut(s) 747, 927
BtsIMutI CAGTG 9 cut(s) 87, 199, 295, 639, 701, 723, 747, 902, 927
Cac8I GCNNGC 3 cut(s) 146, 773, 1093
CaiI CAGNNNCTG 2 cut(s) 65, 655
Cfr13I GGNCC 3 cut(s) 401, 583, 899
Csp6I GTAC 2 cut(s) 246, 1036
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 4 cut(s) 149, 345, 619, 1003
CviQI GTAC 2 cut(s) 246, 1036
DdeI CTNAG 4 cut(s) 351, 435, 759, 1191
DpnI GATC 2 cut(s) 58, 330
DpnII GATC 2 cut(s) 56, 328
EaeI YGGCCR 4 cut(s) 84, 151, 514, 1100
Eam1104I CTCTTC 2 cut(s) 991, 1164
EarI CTCTTC 2 cut(s) 991, 1164
Eco130I CCWWGG 2 cut(s) 344, 735
Eco31I GGTCTC 2 cut(s) 639, 1122
Eco47I GGWCC 1 cut(s) 583
Eco57I CTGAAG 5 cut(s) 36, 356, 865, 926, 937
EcoO109I RGGNCCY 1 cut(s) 583
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 4 cut(s) 403, 1031, 1102, 1149
EcoT14I CCWWGG 2 cut(s) 344, 735
ErhI CCWWGG 2 cut(s) 344, 735
FaeI CATG 4 cut(s) 152, 348, 622, 1006
FaqI GGGAC 2 cut(s) 689, 1120
FatI CATG 4 cut(s) 148, 344, 618, 1002
FblI GTMKAC 2 cut(s) 822, 948
Fnu4HI GCNGC 5 cut(s) 696, 699, 732, 755, 891
FokI GGATG 2 cut(s) 407, 674
Fsp4HI GCNGC 5 cut(s) 696, 699, 732, 755, 891
FspBI CTAG 1 cut(s) 749
GluI GCNGC 5 cut(s) 696, 699, 732, 755, 891
GsaI CCCAGC 1 cut(s) 245
GsuI CTGGAG 2 cut(s) 441, 663
HaeIII GGCC 7 cut(s) 86, 153, 402, 516, 901, 1031, 1102
HapII CCGG 1 cut(s) 154
Hin1II CATG 4 cut(s) 152, 348, 622, 1006
HincII GTYRAC 1 cut(s) 823
HindII GTYRAC 1 cut(s) 823
HindIII AAGCTT 2 cut(s) 338, 1188
HinfI GANTC 3 cut(s) 161, 233, 983
HpaII CCGG 1 cut(s) 154
HphI GGTGA 2 cut(s) 156, 1019
Hpy166II GTNNAC 5 cut(s) 274, 416, 823, 949, 960
Hpy188I TCNGA 3 cut(s) 48, 140, 884
Hpy188III TCNNGA 2 cut(s) 54, 205
Hpy8I GTNNAC 5 cut(s) 274, 416, 823, 949, 960
HpyAV CCTTC 6 cut(s) 88, 151, 574, 841, 889, 901
HpyCH4III ACNGT 3 cut(s) 82, 194, 657
HpyCH4IV ACGT 1 cut(s) 810
HpyCH4V TGCA 8 cut(s) 41, 527, 552, 731, 842, 960, 1091, 1176
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 467, 695, 737, 760
HpyF3I CTNAG 4 cut(s) 351, 435, 759, 1191
HpySE526I ACGT 1 cut(s) 810
Hsp92II CATG 4 cut(s) 152, 348, 622, 1006
Kzo9I GATC 2 cut(s) 56, 328
LmnI GCTCC 4 cut(s) 67, 460, 574, 875
Lsp1109I GCAGC 5 cut(s) 707, 710, 741, 743, 902
LweI GCATC 2 cut(s) 131, 652
MaeI CTAG 1 cut(s) 749
MaeII ACGT 1 cut(s) 810
MalI GATC 2 cut(s) 58, 330
MboI GATC 2 cut(s) 56, 328
MboII GAAGA 4 cut(s) 605, 875, 978, 1181
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 962
MlsI TGGCCA 3 cut(s) 86, 516, 1102
MluCI AATT 4 cut(s) 21, 89, 559, 596
MluNI TGGCCA 3 cut(s) 86, 516, 1102
MlyI GAGTC 1 cut(s) 977
MmeI TCCRAC 2 cut(s) 639, 1116
MnlI CCTC 9 cut(s) 166, 370, 596, 675, 768, 800, 945, 982, 1132
Mox20I TGGCCA 3 cut(s) 86, 516, 1102
MscI TGGCCA 3 cut(s) 86, 516, 1102
MseI TTAA 3 cut(s) 18, 69, 834
Msp20I TGGCCA 3 cut(s) 86, 516, 1102
MspA1I CMGCKG 1 cut(s) 893
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 4 cut(s) 405, 1033, 1104, 1151
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 4 cut(s) 405, 1033, 1104, 1151
MwoI GCNNNNNNNGC 5 cut(s) 150, 467, 695, 737, 760
NcoI CCATGG 1 cut(s) 344
NdeII GATC 2 cut(s) 56, 328
NlaIII CATG 4 cut(s) 152, 348, 622, 1006
NlaIV GGNNCC 4 cut(s) 469, 570, 616, 877
PctI GAATGC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 161, 233
PkrI GCNGC 5 cut(s) 697, 700, 733, 756, 892
PleI GAGTC 1 cut(s) 977
PpsI GAGTC 1 cut(s) 977
PpuMI RGGWCCY 1 cut(s) 583
PshAI GACNNNNGTC 1 cut(s) 998
PshBI ATTAAT 1 cut(s) 834
Psp5II RGGWCCY 1 cut(s) 583
Psp6I CCWGG 4 cut(s) 403, 1031, 1102, 1149
PspFI CCCAGC 1 cut(s) 241
PspGI CCWGG 4 cut(s) 403, 1031, 1102, 1149
PspN4I GGNNCC 4 cut(s) 469, 570, 616, 877
PspPI GGNCC 3 cut(s) 401, 583, 899
PspPPI RGGWCCY 1 cut(s) 583
PstNI CAGNNNCTG 2 cut(s) 65, 655
PsuI RGATCY 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 893
RsaI GTAC 2 cut(s) 247, 1037
RsaNI GTAC 2 cut(s) 246, 1036
SalI GTCGAC 1 cut(s) 821
SaqAI TTAA 3 cut(s) 18, 69, 834
SatI GCNGC 5 cut(s) 696, 699, 732, 755, 891
Sau3AI GATC 2 cut(s) 56, 328
Sau96I GGNCC 3 cut(s) 401, 583, 899
SchI GAGTC 1 cut(s) 977
ScrFI CCNGG 4 cut(s) 405, 1033, 1104, 1151
SduI GDGCHC 1 cut(s) 962
SfaNI GCATC 2 cut(s) 131, 652
SfcI CTRYAG 1 cut(s) 945
SinI GGWCC 1 cut(s) 583
SmlI CTYRAG 2 cut(s) 170, 679
SmoI CTYRAG 2 cut(s) 170, 679
Sse9I AATT 4 cut(s) 21, 89, 559, 596
SsiI CCGC 1 cut(s) 1125
SspMI CTAG 1 cut(s) 749
StyD4I CCNGG 4 cut(s) 403, 1031, 1102, 1149
StyI CCWWGG 2 cut(s) 344, 735
TaaI ACNGT 3 cut(s) 82, 194, 657
TaiI ACGT 1 cut(s) 813
TaqI TCGA 2 cut(s) 588, 822
TasI AATT 4 cut(s) 21, 89, 559, 596
TfiI GAWTC 2 cut(s) 161, 233
Tru1I TTAA 3 cut(s) 18, 69, 834
Tru9I TTAA 3 cut(s) 18, 69, 834
TscAI CASTG 9 cut(s) 87, 199, 295, 646, 708, 730, 747, 909, 927
TseI GCWGC 5 cut(s) 695, 698, 731, 754, 890
TspDTI ATGAA 4 cut(s) 294, 516, 606, 1182
TspGWI ACGGA 3 cut(s) 123, 133, 782
TspRI CASTG 9 cut(s) 87, 199, 295, 646, 708, 730, 747, 909, 927
VneI GTGCAC 1 cut(s) 958
VpaK11BI GGWCC 1 cut(s) 583
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 2 cut(s) 21, 596
XcmI CCANNNNNNNNNTGG 2 cut(s) 94, 562
XmiI GTMKAC 2 cut(s) 822, 948
XspI CTAG 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.