Prupe.5G008000_v2.0.a1

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
854864 .. 857791
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G008000.2

Sequence Viewer

Length: 1359 bp
ATGGCCTCACACGCAGCTCTAGCCTCTACAAGAATCCCAGCCAACACCAGGCTGCCCTCCAAGTCCTCGCACTCTTTTCCCGCTCAATGCTTCTCCAAGAGGCTGGAAGTTGGTGAATTTTCGGGTCTAAGGTCCAGTTCATGTGTGACCTATGCAAGCAATGGTAGAGAGACATCCTTCTTTGATGCTGTGGCTGCACAACTTACTCCCAAGACTACAGGACCAGCTCCTGTTAAGGGAGAAACAGTGGCCAAATTGAAGGTGGCAATCAACGGATTTGGTCGTATTGGCAGGAACTTCCTCCGATGCTGGCATGGCCGGAAGGACTCACCTCTTGATGTCATTGTCGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACTTGCTGAAATATGATTCAATGCTGGGTATTTTCAAAGCAGACGTTAAAATCGTGGACAACGAGACCATCAGCGTTGATGGCAAGCCTGTCCAGGTTGTCTCTAGCAGGGATCCCCTGAAGCTTCCTTGGGCTGAGCTTGGCATTGACATTGTCATCGAGGGCACAGGAGTCTTTGTTGATGGCCCTGGTGCTGGTAAACACATCCAAGCTGGTGCCAAGAAAGTTATCATTACAGCTCCAGCAAAAGGTGCTGACATTCCTACCTATGTTGTTGGGGTGAATGAACAAGACTATTCCCATGAGGTTGCCAACATTGTCAGCAATGCTTCTTGCACCACAAATTGCCTGGCTCCTTTTGTAAAGGTCTTGGATGAAGAATTTGGTATTGTCAAGGGAACCATGACAACTACTCACTCCTACACCGGAGACCAGAGGCTCTTGGATGCTTCACACCGGGACTTAAGGAGAGCCAGAGCAGCAGCACTCAACATAGTTCCCACAAGCACCGGTGCAGCCAAGGCTGTGTCTCTGGTGCTGCCTCAACTCAAAGGAAAGCTCAATGGAATTGCCCTCCGTGTGCCAACACCTAATGTATCAGTGGTTGACCTTGTGATTAATGTTGAGAAGAAAGGTATTTCAGCAGAAGATGTCAATGCAGCCTTCAGAAAGGCAGCCGAGGGACCACTGCAGGGCATATTAGCAGTGTGTGACATTCCTCTTGTGTCGGTAGACTTCAGGTGCACCGATGTTTCCTCCACCATAGACTCCTCCTTGACCATGGTCATGGGTGATGATATGGTCAAGGTGGTTGCCTGGTACGACAACGAATGGGGATACAGCCAAAGGGTTGTGGATTTGGCACATTTGGTTGCAAGCAAGTGGCCAGGCACGCCACAAGCGGGAAGCGGAGACCCGTTGGAGGAATTCTGCAAGACAAACCCGGCTGACGAGGAGTGCAAAGTCTATGAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

453

Amino Acids

48.1

Weight (kDa)

6.76

Isoelectric Point (pI)

28.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 596
AccBSI CCGCTC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 1113
AciI CCGC 3 cut(s) 81, 1283, 1290
AclWI GGATC 2 cut(s) 488, 501
AcoI YGGCCR 3 cut(s) 249, 316, 1265
AcsI RAATTY 3 cut(s) 116, 761, 1307
AcuI CTGAAG 3 cut(s) 521, 1030, 1102
AfaI GTAC 1 cut(s) 1202
AfiI CCNNNNNNNGG 7 cut(s) 48, 236, 575, 629, 1073, 1283, 1303
AflII CTTAAG 1 cut(s) 844
AgeI ACCGGT 1 cut(s) 890
AgsI TTSAA 3 cut(s) 259, 402, 418
AjnI CCWGG 6 cut(s) 47, 474, 568, 729, 1196, 1267
AluBI AGCT 7 cut(s) 17, 227, 505, 520, 593, 620, 940
AluI AGCT 7 cut(s) 17, 227, 505, 520, 593, 620, 940
Alw21I GWGCWC 1 cut(s) 1127
Alw26I GTCTC 6 cut(s) 164, 440, 487, 804, 915, 1287
Alw44I GTGCAC 1 cut(s) 1123
AlwI GGATC 2 cut(s) 488, 501
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 5 cut(s) 3, 249, 316, 565, 1265
ApaLI GTGCAC 1 cut(s) 1123
ApeKI GCWGC 9 cut(s) 14, 52, 194, 860, 863, 896, 919, 1040, 1055
ApoI RAATTY 3 cut(s) 116, 761, 1307
AseI ATTAAT 1 cut(s) 999
AsiGI ACCGGT 1 cut(s) 890
AspS9I GGNCC 4 cut(s) 132, 221, 566, 1064
AsuC2I CCSGG 2 cut(s) 839, 1325
AsuHPI GGTGA 4 cut(s) 125, 321, 673, 1184
AvaII GGWCC 3 cut(s) 132, 221, 1064
BaeGI GKGCMC 2 cut(s) 548, 1127
BalI TGGCCA 2 cut(s) 251, 1267
BamHI GGATCC 1 cut(s) 493
BanI GGYRCC 1 cut(s) 596
Bbv12I GWGCWC 1 cut(s) 1127
BbvI GCAGC 9 cut(s) 26, 39, 181, 872, 875, 906, 908, 1052, 1067
BccI CCATC 3 cut(s) 455, 458, 557
BciT130I CCWGG 6 cut(s) 49, 476, 570, 731, 1198, 1269
BciVI GTATCC 1 cut(s) 1211
BcnI CCSGG 2 cut(s) 839, 1325
BcoDI GTCTC 6 cut(s) 164, 440, 487, 804, 915, 1287
BfaI CTAG 2 cut(s) 20, 486
BfmI CTRYAG 2 cut(s) 216, 1070
BfrI CTTAAG 1 cut(s) 844
BfuI GTATCC 1 cut(s) 1211
BisI GCNGC 9 cut(s) 15, 53, 195, 861, 864, 897, 920, 1041, 1056
BlpI GCTNAGC 1 cut(s) 516
BlsI GCNGC 9 cut(s) 16, 54, 196, 862, 865, 898, 921, 1042, 1057
Bme1390I CCNGG 8 cut(s) 49, 476, 570, 731, 839, 1198, 1269, 1325
Bme18I GGWCC 3 cut(s) 132, 221, 1064
BmgT120I GGNCC 4 cut(s) 132, 221, 566, 1064
BmiI GGNNCC 5 cut(s) 495, 598, 735, 781, 1065
BmrFI CCNGG 8 cut(s) 49, 476, 570, 731, 839, 1198, 1269, 1325
BmsI GCATC 3 cut(s) 175, 296, 817
BoxI GACNNNNGTC 1 cut(s) 1163
BpmI CTGGAG 1 cut(s) 606
Bpu1102I GCTNAGC 1 cut(s) 516
BpuMI CCSGG 2 cut(s) 839, 1325
BsaI GGTCTC 3 cut(s) 440, 804, 1287
BsaJI CCNNGG 5 cut(s) 509, 568, 900, 1059, 1161
BsaWI WCCGGW 2 cut(s) 806, 890
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 543, 573
Bsc4I CCNNNNNNNGG 7 cut(s) 48, 236, 575, 629, 1073, 1283, 1303
Bse118I RCCGGY 1 cut(s) 890
Bse1I ACTGG 1 cut(s) 135
Bse3DI GCAATG 2 cut(s) 166, 712
BseBI CCWGG 6 cut(s) 49, 476, 570, 731, 1198, 1269
BseDI CCNNGG 5 cut(s) 509, 568, 900, 1059, 1161
BseGI GGATG 4 cut(s) 173, 585, 760, 832
BseLI CCNNNNNNNGG 7 cut(s) 48, 236, 575, 629, 1073, 1283, 1303
BseMI GCAATG 2 cut(s) 166, 712
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 2 cut(s) 1141, 1349
BseSI GKGCMC 2 cut(s) 548, 1127
BseXI GCAGC 9 cut(s) 26, 39, 181, 872, 875, 906, 908, 1052, 1067
BseYI CCCAGC 2 cut(s) 37, 406
BsgI GTGCAG 2 cut(s) 180, 915
BshFI GGCC 5 cut(s) 5, 251, 318, 567, 1267
BshNI GGYRCC 1 cut(s) 596
BshTI ACCGGT 1 cut(s) 890
BsiHKAI GWGCWC 1 cut(s) 1127
BsiSI CCGG 5 cut(s) 319, 807, 838, 891, 1325
BslFI GGGAC 2 cut(s) 854, 1077
BslI CCNNNNNNNGG 7 cut(s) 48, 236, 575, 629, 1073, 1283, 1303
BsmAI GTCTC 6 cut(s) 164, 440, 487, 804, 915, 1287
BsmFI GGGAC 2 cut(s) 854, 1077
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 5 cut(s) 5, 251, 318, 567, 1267
Bso31I GGTCTC 3 cut(s) 440, 804, 1287
Bsp1286I GDGCHC 2 cut(s) 548, 1127
Bsp143I GATC 1 cut(s) 493
Bsp1720I GCTNAGC 1 cut(s) 516
Bsp19I CCATGG 1 cut(s) 1161
BspACI CCGC 3 cut(s) 81, 1283, 1290
BspANI GGCC 5 cut(s) 5, 251, 318, 567, 1267
BspCNI CTCAG 1 cut(s) 508
BspLI GGNNCC 5 cut(s) 495, 598, 735, 781, 1065
BspMAI CTGCAG 1 cut(s) 1074
BspPI GGATC 2 cut(s) 488, 501
BspT107I GGYRCC 1 cut(s) 596
BspTI CTTAAG 1 cut(s) 844
BspTNI GGTCTC 3 cut(s) 440, 804, 1287
BsrBI CCGCTC 1 cut(s) 83
BsrDI GCAATG 2 cut(s) 166, 712
BsrFI RCCGGY 1 cut(s) 890
BsrI ACTGG 1 cut(s) 135
BssAI RCCGGY 1 cut(s) 890
BssECI CCNNGG 5 cut(s) 509, 568, 900, 1059, 1161
BssMI GATC 1 cut(s) 493
BssT1I CCWWGG 3 cut(s) 509, 900, 1161
Bst2UI CCWGG 6 cut(s) 49, 476, 570, 731, 1198, 1269
Bst4CI ACNGT 2 cut(s) 247, 359
BstAFI CTTAAG 1 cut(s) 844
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 5 cut(s) 157, 311, 467, 1258, 1274
BstDEI CTNAG 2 cut(s) 128, 516
BstDSI CCRYGG 1 cut(s) 1161
BstF5I GGATG 4 cut(s) 173, 585, 760, 832
BstKTI GATC 1 cut(s) 496
BstMAI GTCTC 6 cut(s) 164, 440, 487, 804, 915, 1287
BstMBI GATC 1 cut(s) 493
BstMWI GCNNNNNNNGC 9 cut(s) 11, 20, 194, 315, 462, 632, 860, 902, 1273
BstNI CCWGG 6 cut(s) 49, 476, 570, 731, 1198, 1269
BstPAI GACNNNNGTC 1 cut(s) 1163
BstSCI CCNGG 8 cut(s) 47, 474, 568, 729, 837, 1196, 1267, 1323
BstSFI CTRYAG 2 cut(s) 216, 1070
BstSLI GKGCMC 2 cut(s) 548, 1127
BstV1I GCAGC 9 cut(s) 26, 39, 181, 872, 875, 906, 908, 1052, 1067
BstX2I RGATCY 1 cut(s) 493
BstXI CCANNNNNNTGG 2 cut(s) 103, 1168
BstYI RGATCY 1 cut(s) 493
BsuI GTATCC 1 cut(s) 1211
BsuRI GGCC 5 cut(s) 5, 251, 318, 567, 1267
BtgI CCRYGG 1 cut(s) 1161
BtsCI GGATG 4 cut(s) 173, 585, 760, 832
BtsI GCAGTG 2 cut(s) 1067, 1092
BtsIMutI CAGTG 5 cut(s) 252, 364, 987, 1067, 1092
Cac8I GCNNGC 5 cut(s) 157, 311, 467, 1258, 1274
CaiI CAGNNNCTG 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 890
Cfr13I GGNCC 4 cut(s) 132, 221, 566, 1064
Csp6I GTAC 1 cut(s) 1201
CspAI ACCGGT 1 cut(s) 890
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 6 cut(s) 141, 314, 683, 784, 1162, 1168
CviQI GTAC 1 cut(s) 1201
DdeI CTNAG 2 cut(s) 128, 516
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
EaeI YGGCCR 3 cut(s) 249, 316, 1265
Eco130I CCWWGG 3 cut(s) 509, 900, 1161
Eco31I GGTCTC 3 cut(s) 440, 804, 1287
Eco47I GGWCC 3 cut(s) 132, 221, 1064
Eco57I CTGAAG 3 cut(s) 521, 1030, 1102
EcoRI GAATTC 1 cut(s) 1307
EcoRII CCWGG 6 cut(s) 47, 474, 568, 729, 1196, 1267
EcoT14I CCWWGG 3 cut(s) 509, 900, 1161
ErhI CCWWGG 3 cut(s) 509, 900, 1161
FaeI CATG 6 cut(s) 144, 317, 686, 787, 1165, 1171
FaqI GGGAC 2 cut(s) 854, 1077
FatI CATG 6 cut(s) 140, 313, 682, 783, 1161, 1167
FauI CCCGC 2 cut(s) 88, 1276
FblI GTMKAC 1 cut(s) 1113
Fnu4HI GCNGC 9 cut(s) 15, 53, 195, 861, 864, 897, 920, 1041, 1056
FokI GGATG 4 cut(s) 160, 572, 767, 839
Fsp4HI GCNGC 9 cut(s) 15, 53, 195, 861, 864, 897, 920, 1041, 1056
FspBI CTAG 2 cut(s) 20, 486
GluI GCNGC 9 cut(s) 15, 53, 195, 861, 864, 897, 920, 1041, 1056
GsaI CCCAGC 2 cut(s) 41, 410
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 5 cut(s) 5, 251, 318, 567, 1267
HapII CCGG 5 cut(s) 319, 807, 838, 891, 1325
Hin1II CATG 6 cut(s) 144, 317, 686, 787, 1165, 1171
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 5 cut(s) 33, 326, 398, 552, 1148
HpaII CCGG 5 cut(s) 319, 807, 838, 891, 1325
HphI GGTGA 4 cut(s) 125, 321, 673, 1184
Hpy166II GTNNAC 5 cut(s) 439, 581, 988, 1114, 1125
Hpy188I TCNGA 2 cut(s) 305, 1049
Hpy188III TCNNGA 2 cut(s) 335, 370
Hpy8I GTNNAC 5 cut(s) 439, 581, 988, 1114, 1125
HpyAV CCTTC 4 cut(s) 187, 253, 316, 1054
HpyCH4III ACNGT 2 cut(s) 247, 359
HpyCH4IV ACGT 1 cut(s) 426
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 20, 194, 315, 462, 632, 860, 902, 1273
HpyF3I CTNAG 2 cut(s) 128, 516
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 6 cut(s) 144, 317, 686, 787, 1165, 1171
Kzo9I GATC 1 cut(s) 493
LmnI GCTCC 3 cut(s) 232, 625, 739
Lsp1109I GCAGC 9 cut(s) 26, 39, 181, 872, 875, 906, 908, 1052, 1067
LweI GCATC 3 cut(s) 175, 296, 817
MaeI CTAG 2 cut(s) 20, 486
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 2 cut(s) 145, 1091
MalI GATC 1 cut(s) 495
MbiI CCGCTC 1 cut(s) 83
MboI GATC 1 cut(s) 493
MboII GAAGA 3 cut(s) 770, 1021, 1040
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 2 cut(s) 548, 1127
MlsI TGGCCA 2 cut(s) 251, 1267
MluCI AATT 6 cut(s) 116, 254, 724, 761, 948, 1307
MluNI TGGCCA 2 cut(s) 251, 1267
MlyI GAGTC 3 cut(s) 320, 561, 1142
MmeI TCCRAC 1 cut(s) 1281
Mox20I TGGCCA 2 cut(s) 251, 1267
MscI TGGCCA 2 cut(s) 251, 1267
MseI TTAA 4 cut(s) 234, 429, 845, 999
MslI CAYNNNNRTG 1 cut(s) 1166
Msp20I TGGCCA 2 cut(s) 251, 1267
MspCI CTTAAG 1 cut(s) 844
MspI CCGG 5 cut(s) 319, 807, 838, 891, 1325
MspR9I CCNGG 8 cut(s) 49, 476, 570, 731, 839, 1198, 1269, 1325
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 6 cut(s) 49, 476, 570, 731, 1198, 1269
MwoI GCNNNNNNNGC 9 cut(s) 11, 20, 194, 315, 462, 632, 860, 902, 1273
NciI CCSGG 2 cut(s) 839, 1325
NcoI CCATGG 1 cut(s) 1161
NdeII GATC 1 cut(s) 493
NlaIII CATG 6 cut(s) 144, 317, 686, 787, 1165, 1171
NlaIV GGNNCC 5 cut(s) 495, 598, 735, 781, 1065
NmeAIII GCCGAG 1 cut(s) 1084
NmuCI GTSAC 2 cut(s) 145, 1091
PcsI WCGNNNNNNNCGW 2 cut(s) 432, 441
PctI GAATGC 1 cut(s) 379
PfeI GAWTC 2 cut(s) 33, 398
PflFI GACNNNGTC 1 cut(s) 533
PinAI ACCGGT 1 cut(s) 890
PkrI GCNGC 9 cut(s) 16, 54, 196, 862, 865, 898, 921, 1042, 1057
PleI GAGTC 3 cut(s) 320, 560, 1142
PpsI GAGTC 3 cut(s) 320, 560, 1142
PshAI GACNNNNGTC 1 cut(s) 1163
PshBI ATTAAT 1 cut(s) 999
Psp6I CCWGG 6 cut(s) 47, 474, 568, 729, 1196, 1267
PspFI CCCAGC 2 cut(s) 37, 406
PspGI CCWGG 6 cut(s) 47, 474, 568, 729, 1196, 1267
PspN4I GGNNCC 5 cut(s) 495, 598, 735, 781, 1065
PspPI GGNCC 4 cut(s) 132, 221, 566, 1064
PstI CTGCAG 1 cut(s) 1074
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 493
PsyI GACNNNGTC 1 cut(s) 533
RsaI GTAC 1 cut(s) 1202
RsaNI GTAC 1 cut(s) 1201
RseI CAYNNNNRTG 1 cut(s) 1166
SaqAI TTAA 4 cut(s) 234, 429, 845, 999
SatI GCNGC 9 cut(s) 15, 53, 195, 861, 864, 897, 920, 1041, 1056
Sau3AI GATC 1 cut(s) 493
Sau96I GGNCC 4 cut(s) 132, 221, 566, 1064
SchI GAGTC 3 cut(s) 320, 561, 1142
ScrFI CCNGG 8 cut(s) 49, 476, 570, 731, 839, 1198, 1269, 1325
SduI GDGCHC 2 cut(s) 548, 1127
SfaNI GCATC 3 cut(s) 175, 296, 817
SfcI CTRYAG 2 cut(s) 216, 1070
SgrAI CRCCGGYG 1 cut(s) 890
SinI GGWCC 3 cut(s) 132, 221, 1064
SmiMI CAYNNNNRTG 1 cut(s) 1166
SmlI CTYRAG 1 cut(s) 844
SmoI CTYRAG 1 cut(s) 844
Sse9I AATT 6 cut(s) 116, 254, 724, 761, 948, 1307
SsiI CCGC 3 cut(s) 81, 1283, 1290
SspMI CTAG 2 cut(s) 20, 486
StyD4I CCNGG 8 cut(s) 47, 474, 568, 729, 837, 1196, 1267, 1323
StyI CCWWGG 3 cut(s) 509, 900, 1161
TaaI ACNGT 2 cut(s) 247, 359
TaiI ACGT 1 cut(s) 429
TaqI TCGA 1 cut(s) 540
TasI AATT 6 cut(s) 116, 254, 724, 761, 948, 1307
TfiI GAWTC 2 cut(s) 33, 398
Tru1I TTAA 4 cut(s) 234, 429, 845, 999
Tru9I TTAA 4 cut(s) 234, 429, 845, 999
TscAI CASTG 5 cut(s) 252, 364, 987, 1074, 1092
TseFI GTSAC 2 cut(s) 145, 1091
TseI GCWGC 9 cut(s) 14, 52, 194, 860, 863, 896, 919, 1040, 1055
Tsp45I GTSAC 2 cut(s) 145, 1091
TspDTI ATGAA 3 cut(s) 129, 681, 771
TspGWI ACGGA 2 cut(s) 288, 947
TspRI CASTG 5 cut(s) 252, 364, 987, 1074, 1092
Tth111I GACNNNGTC 1 cut(s) 533
Vha464I CTTAAG 1 cut(s) 844
VneI GTGCAC 1 cut(s) 1123
VpaK11BI GGWCC 3 cut(s) 132, 221, 1064
VspI ATTAAT 1 cut(s) 999
XapI RAATTY 3 cut(s) 116, 761, 1307
XcmI CCANNNNNNNNNTGG 2 cut(s) 259, 727
XmiI GTMKAC 1 cut(s) 1113
XspI CTAG 2 cut(s) 20, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.