pycom06g00570

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
537415 .. 540172
2758 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g00570.10

Sequence Viewer

Length: 1380 bp
ATGTACCATTTAAAACAAGCCATGGCCTCACACGCAGCTCTCGCCTCTTCGCGAGTCCCGGCTAACACCAGGCTTCCCTCCAAGCCCTCCCACTCATTTCCCACCCAATGCTTCTCCAAGAGGCTTGAAGTTGGTGAGTTTTCAGGACTAAGATCGAGTTCATGCGTGACCTATGCAAGCAATGGCAGAGAGCAATCCTTCTTCGATACTGTCGCTGCCCAGCTTACTCCCAAGACTGCAGGACCAACTCCTGTCAGGGGAGAAACAGTGGCCAAATTGAAGGTGGCAATCAACGGATTTGGACGTATTGGCAGAAACTTCCTCCGATGCTGGCATGGCCGCAAGGACTCACCTCTCGAAGTCATTGTTGTTAATGACAGTGGTGGTGTCAAGAATGCTTCACACTTGCTGAAATACGACTCAATGCTGGGTACTTTCAAGGCAGACGTGAAAATCGTTGACAATGAGACCATCAGCGTTGATGGTAAGCCCGTCAAGGTTGTCTCTAGCAGAGATCCCCTGAAGCTTCCATGGGCTGAGATGGGCATTGACATTGTTATCGAGGGAACAGGAGTCTTTGTCGATGGCCCTGGTGCCGGCAAACATATCCAAGCCGGTGCCAAGAAAGTCATCATTACAGCTCCAGCAAAAGGTGCTGACATTCCTACCTATGTTGTCGGGGTGAATGAAAAAGACTACGGCCACGACGTTGCCAACATTGTAAGCAATGCTTCTTGCACCACAAACTGCCTGGCTCCTTTCGTAAAGATCCTGGATGAAGAATTTGGCATTGTCAAGGGAACCATGACAACTACTCATTCCTACACTGGAGACCAGAGGCTCTTGGACGCTTCACACCGGGACTTAAGGAGAGCCAGAGCGGCAGCACTAAACATAGTCCCCACAAGCACTGGTGCAGCAAAGGCTGTGTCCCTTGTGCTGCCTCAACTCAAAGGCAAGCTCAACGGCATTGCCCTCCGTGTGCCAACACCTAATGTATCAGTGGTTGACCTTGTGATCAACGTTGCAAAGAAAGGTATTTCAGCAGAAGATGTCAATGCAGCCTTCAGAAAGGCAGCGGACGGACCACTTAAGGGCATATTGGCAGTGTGCGACGTTCCTCTTGTGTCTGTGGACTTCAGGTGCACTGATGTTTCCTCCACCATAGACTCCTCCTTGACCATGGTCATGGGTGATGATATGGTCAAGGTGGTGGCCTGGTACGACAACGAATGGGGATACAGCCAAAGGGTTGTGGATTTGGCACATTTGGTTGCAAGCAAGTGGCCAGGCGCGGCAGTAGTGGGAAGCGGAGACCCATTGGAGGATTTCTGCAAGACAAACCCGGCAGACGAGGAGTGCAAAGTCTATGAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

460

Amino Acids

48.91

Weight (kDa)

8.44

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 593, 617
AccBSI CCGCTC 1 cut(s) 881
AccII CGCG 2 cut(s) 52, 1295
AciI CCGC 5 cut(s) 340, 881, 1079, 1295, 1311
AclI AACGTT 1 cut(s) 1023
AclWI GGATC 2 cut(s) 509, 763
AcoI YGGCCR 4 cut(s) 270, 337, 700, 1286
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 3 cut(s) 542, 1051, 1123
AfaI GTAC 3 cut(s) 5, 433, 1223
AfiI CCNNNNNNNGG 5 cut(s) 257, 596, 650, 1094, 1324
AflII CTTAAG 2 cut(s) 865, 1091
AgsI TTSAA 3 cut(s) 128, 280, 439
AjiI CACGTC 1 cut(s) 448
AjnI CCWGG 6 cut(s) 68, 589, 750, 771, 1217, 1288
AluBI AGCT 5 cut(s) 38, 223, 526, 641, 961
AluI AGCT 5 cut(s) 38, 223, 526, 641, 961
Alw21I GWGCWC 1 cut(s) 1148
Alw26I GTCTC 4 cut(s) 461, 508, 825, 1308
Alw44I GTGCAC 1 cut(s) 1144
AlwI GGATC 2 cut(s) 509, 763
AoxI GGCC 7 cut(s) 24, 270, 337, 586, 700, 1215, 1286
ApaLI GTGCAC 1 cut(s) 1144
ApeKI GCWGC 7 cut(s) 35, 215, 884, 917, 940, 1061, 1076
ApoI RAATTY 1 cut(s) 782
ArsI GACNNNNNNTTYG 2 cut(s) 914, 946
AspLEI GCGC 1 cut(s) 1295
AspS9I GGNCC 3 cut(s) 242, 587, 1085
AsuC2I CCSGG 3 cut(s) 59, 860, 1346
AsuHPI GGTGA 4 cut(s) 146, 342, 694, 1205
AvaII GGWCC 2 cut(s) 242, 1085
BaeGI GKGCMC 1 cut(s) 1148
BalI TGGCCA 2 cut(s) 272, 1288
BanI GGYRCC 2 cut(s) 593, 617
Bbv12I GWGCWC 1 cut(s) 1148
BbvI GCAGC 7 cut(s) 47, 202, 896, 927, 929, 1073, 1088
BccI CCATC 4 cut(s) 476, 479, 535, 578
BceAI ACGGC 2 cut(s) 715, 982
BciT130I CCWGG 6 cut(s) 70, 591, 752, 773, 1219, 1290
BciVI GTATCC 1 cut(s) 1232
BclI TGATCA 1 cut(s) 1017
BcnI CCSGG 3 cut(s) 59, 860, 1346
BcoDI GTCTC 4 cut(s) 461, 508, 825, 1308
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 237
BfrI CTTAAG 2 cut(s) 865, 1091
BfuI GTATCC 1 cut(s) 1232
BglI GCCNNNNNGGC 1 cut(s) 881
Bme1390I CCNGG 9 cut(s) 59, 70, 591, 752, 773, 860, 1219, 1290, 1346
Bme18I GGWCC 2 cut(s) 242, 1085
BmgBI CACGTC 1 cut(s) 448
BmgT120I GGNCC 3 cut(s) 242, 587, 1085
BmiI GGNNCC 4 cut(s) 595, 619, 756, 802
BmrFI CCNGG 9 cut(s) 59, 70, 591, 752, 773, 860, 1219, 1290, 1346
BmsI GCATC 1 cut(s) 317
BoxI GACNNNNGTC 1 cut(s) 1184
BpmI CTGGAG 2 cut(s) 627, 849
BpuMI CCSGG 3 cut(s) 59, 860, 1346
BsaI GGTCTC 3 cut(s) 461, 825, 1308
BsaJI CCNNGG 4 cut(s) 21, 530, 589, 1182
BsaXI ACNNNNNCTCC 4 cut(s) 252, 282, 564, 594
Bsc4I CCNNNNNNNGG 5 cut(s) 257, 596, 650, 1094, 1324
Bse118I RCCGGY 2 cut(s) 596, 614
Bse1I ACTGG 2 cut(s) 832, 916
Bse3DI GCAATG 3 cut(s) 187, 733, 969
BseBI CCWGG 6 cut(s) 70, 591, 752, 773, 1219, 1290
BseDI CCNNGG 4 cut(s) 21, 530, 589, 1182
BseGI GGATG 1 cut(s) 781
BseLI CCNNNNNNNGG 5 cut(s) 257, 596, 650, 1094, 1324
BseMI GCAATG 3 cut(s) 187, 733, 969
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 2 cut(s) 832, 916
BseRI GAGGAG 2 cut(s) 1162, 1370
BseSI GKGCMC 1 cut(s) 1148
BseXI GCAGC 7 cut(s) 47, 202, 896, 927, 929, 1073, 1088
BseYI CCCAGC 2 cut(s) 219, 427
BsgI GTGCAG 1 cut(s) 936
Bsh1236I CGCG 2 cut(s) 52, 1295
BshFI GGCC 7 cut(s) 26, 272, 339, 588, 702, 1217, 1288
BshNI GGYRCC 2 cut(s) 593, 617
BsiHKAI GWGCWC 1 cut(s) 1148
BsiSI CCGG 5 cut(s) 59, 597, 615, 859, 1346
BslFI GGGAC 4 cut(s) 41, 875, 884, 916
BslI CCNNNNNNNGG 5 cut(s) 257, 596, 650, 1094, 1324
BsmAI GTCTC 4 cut(s) 461, 508, 825, 1308
BsmFI GGGAC 4 cut(s) 41, 875, 884, 916
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 7 cut(s) 26, 272, 339, 588, 702, 1217, 1288
Bso31I GGTCTC 3 cut(s) 461, 825, 1308
Bsp1286I GDGCHC 1 cut(s) 1148
Bsp143I GATC 4 cut(s) 152, 514, 768, 1017
Bsp19I CCATGG 3 cut(s) 21, 530, 1182
Bsp68I TCGCGA 1 cut(s) 52
BspACI CCGC 5 cut(s) 340, 881, 1079, 1295, 1311
BspANI GGCC 7 cut(s) 26, 272, 339, 588, 702, 1217, 1288
BspCNI CTCAG 1 cut(s) 529
BspFNI CGCG 2 cut(s) 52, 1295
BspLI GGNNCC 4 cut(s) 595, 619, 756, 802
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 2 cut(s) 509, 763
BspT107I GGYRCC 2 cut(s) 593, 617
BspTI CTTAAG 2 cut(s) 865, 1091
BspTNI GGTCTC 3 cut(s) 461, 825, 1308
BsrBI CCGCTC 1 cut(s) 881
BsrDI GCAATG 3 cut(s) 187, 733, 969
BsrFI RCCGGY 2 cut(s) 596, 614
BsrI ACTGG 2 cut(s) 832, 916
BssAI RCCGGY 2 cut(s) 596, 614
BssECI CCNNGG 4 cut(s) 21, 530, 589, 1182
BssMI GATC 4 cut(s) 152, 514, 768, 1017
BssT1I CCWWGG 3 cut(s) 21, 530, 1182
Bst2UI CCWGG 6 cut(s) 70, 591, 752, 773, 1219, 1290
Bst4CI ACNGT 3 cut(s) 211, 268, 380
Bst6I CTCTTC 1 cut(s) 52
BstAFI CTTAAG 2 cut(s) 865, 1091
BstAPI GCANNNNNTGC 1 cut(s) 653
BstC8I GCNNGC 5 cut(s) 178, 332, 598, 959, 1279
BstDEI CTNAG 2 cut(s) 149, 537
BstDSI CCRYGG 3 cut(s) 21, 530, 1182
BstF5I GGATG 1 cut(s) 781
BstFNI CGCG 2 cut(s) 52, 1295
BstHHI GCGC 1 cut(s) 1295
BstKTI GATC 4 cut(s) 155, 517, 771, 1020
BstMAI GTCTC 4 cut(s) 461, 508, 825, 1308
BstMBI GATC 4 cut(s) 152, 514, 768, 1017
BstMWI GCNNNNNNNGC 6 cut(s) 32, 41, 336, 653, 881, 923
BstNI CCWGG 6 cut(s) 70, 591, 752, 773, 1219, 1290
BstPAI GACNNNNGTC 1 cut(s) 1184
BstSCI CCNGG 9 cut(s) 57, 68, 589, 750, 771, 858, 1217, 1288, 1344
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 1148
BstUI CGCG 2 cut(s) 52, 1295
BstV1I GCAGC 7 cut(s) 47, 202, 896, 927, 929, 1073, 1088
BstX2I RGATCY 2 cut(s) 514, 768
BstXI CCANNNNNNTGG 1 cut(s) 1189
BstYI RGATCY 2 cut(s) 514, 768
BsuI GTATCC 1 cut(s) 1232
BsuRI GGCC 7 cut(s) 26, 272, 339, 588, 702, 1217, 1288
BtgI CCRYGG 3 cut(s) 21, 530, 1182
BtrI CACGTC 1 cut(s) 448
BtsCI GGATG 1 cut(s) 781
BtsI GCAGTG 1 cut(s) 1113
BtsIMutI CAGTG 7 cut(s) 273, 385, 825, 909, 1008, 1113, 1146
BtuMI TCGCGA 1 cut(s) 52
Cac8I GCNNGC 5 cut(s) 178, 332, 598, 959, 1279
CfoI GCGC 1 cut(s) 1295
Cfr10I RCCGGY 2 cut(s) 596, 614
Cfr13I GGNCC 3 cut(s) 242, 587, 1085
CseI GACGC 1 cut(s) 857
Csp6I GTAC 3 cut(s) 4, 432, 1222
CviAII CATG 7 cut(s) 22, 162, 335, 531, 805, 1183, 1189
CviQI GTAC 3 cut(s) 4, 432, 1222
DdeI CTNAG 2 cut(s) 149, 537
DpnI GATC 4 cut(s) 154, 516, 770, 1019
DpnII GATC 4 cut(s) 152, 514, 768, 1017
DraI TTTAAA 1 cut(s) 12
EaeI YGGCCR 4 cut(s) 270, 337, 700, 1286
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco130I CCWWGG 3 cut(s) 21, 530, 1182
Eco31I GGTCTC 3 cut(s) 461, 825, 1308
Eco47I GGWCC 2 cut(s) 242, 1085
Eco57I CTGAAG 3 cut(s) 542, 1051, 1123
EcoRII CCWGG 6 cut(s) 68, 589, 750, 771, 1217, 1288
EcoT14I CCWWGG 3 cut(s) 21, 530, 1182
ErhI CCWWGG 3 cut(s) 21, 530, 1182
FaeI CATG 7 cut(s) 25, 165, 338, 534, 808, 1186, 1192
FalI AAGNNNNNCTT 2 cut(s) 715, 747
FaqI GGGAC 4 cut(s) 41, 875, 884, 916
FatI CATG 7 cut(s) 21, 161, 334, 530, 804, 1182, 1188
FbaI TGATCA 1 cut(s) 1017
FokI GGATG 1 cut(s) 788
FspBI CTAG 1 cut(s) 507
GlaI GCGC 1 cut(s) 1294
GsaI CCCAGC 2 cut(s) 223, 431
GsuI CTGGAG 2 cut(s) 627, 849
HaeIII GGCC 7 cut(s) 26, 272, 339, 588, 702, 1217, 1288
HapII CCGG 5 cut(s) 59, 597, 615, 859, 1346
HgaI GACGC 1 cut(s) 857
HhaI GCGC 1 cut(s) 1295
Hin1II CATG 7 cut(s) 25, 165, 338, 534, 808, 1186, 1192
Hin6I GCGC 1 cut(s) 1293
HinP1I GCGC 1 cut(s) 1293
HincII GTYRAC 2 cut(s) 460, 1009
HindII GTYRAC 2 cut(s) 460, 1009
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 5 cut(s) 54, 347, 419, 573, 1169
HpaII CCGG 5 cut(s) 59, 597, 615, 859, 1346
HphI GGTGA 4 cut(s) 146, 342, 694, 1205
Hpy166II GTNNAC 4 cut(s) 460, 1009, 1135, 1146
Hpy188I TCNGA 2 cut(s) 326, 1070
Hpy188III TCNNGA 4 cut(s) 51, 144, 356, 391
Hpy8I GTNNAC 4 cut(s) 460, 1009, 1135, 1146
Hpy99I CGWCG 2 cut(s) 710, 1118
HpyAV CCTTC 3 cut(s) 208, 274, 1075
HpyCH4III ACNGT 3 cut(s) 211, 268, 380
HpyCH4IV ACGT 5 cut(s) 304, 447, 708, 1023, 1116
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 41, 336, 653, 881, 923
HpyF3I CTNAG 2 cut(s) 149, 537
HpySE526I ACGT 5 cut(s) 304, 447, 708, 1023, 1116
Hsp92II CATG 7 cut(s) 25, 165, 338, 534, 808, 1186, 1192
HspAI GCGC 1 cut(s) 1293
KroI GCCGGC 1 cut(s) 596
KroNI GCCGGC 1 cut(s) 598
Ksp22I TGATCA 1 cut(s) 1017
Kzo9I GATC 4 cut(s) 152, 514, 768, 1017
LmnI GCTCC 2 cut(s) 646, 760
Lsp1109I GCAGC 7 cut(s) 47, 202, 896, 927, 929, 1073, 1088
LweI GCATC 1 cut(s) 317
MaeI CTAG 1 cut(s) 507
MaeII ACGT 5 cut(s) 304, 447, 708, 1023, 1116
MaeIII GTNAC 1 cut(s) 166
MalI GATC 4 cut(s) 154, 516, 770, 1019
MbiI CCGCTC 1 cut(s) 881
MboI GATC 4 cut(s) 152, 514, 768, 1017
MboII GAAGA 4 cut(s) 39, 193, 791, 1061
MflI RGATCY 2 cut(s) 514, 768
MhlI GDGCHC 1 cut(s) 1148
MlsI TGGCCA 2 cut(s) 272, 1288
MluCI AATT 2 cut(s) 275, 782
MluNI TGGCCA 2 cut(s) 272, 1288
MlyI GAGTC 5 cut(s) 63, 341, 413, 582, 1163
Mox20I TGGCCA 2 cut(s) 272, 1288
MroNI GCCGGC 1 cut(s) 596
MscI TGGCCA 2 cut(s) 272, 1288
MseI TTAA 4 cut(s) 11, 372, 866, 1092
MslI CAYNNNNRTG 1 cut(s) 1187
Msp20I TGGCCA 2 cut(s) 272, 1288
MspA1I CMGCKG 1 cut(s) 1079
MspCI CTTAAG 2 cut(s) 865, 1091
MspI CCGG 5 cut(s) 59, 597, 615, 859, 1346
MspR9I CCNGG 9 cut(s) 59, 70, 591, 752, 773, 860, 1219, 1290, 1346
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 6 cut(s) 70, 591, 752, 773, 1219, 1290
MvnI CGCG 2 cut(s) 52, 1295
MwoI GCNNNNNNNGC 6 cut(s) 32, 41, 336, 653, 881, 923
NaeI GCCGGC 1 cut(s) 598
NciI CCSGG 3 cut(s) 59, 860, 1346
NcoI CCATGG 3 cut(s) 21, 530, 1182
NdeII GATC 4 cut(s) 152, 514, 768, 1017
NgoMIV GCCGGC 1 cut(s) 596
NlaIII CATG 7 cut(s) 25, 165, 338, 534, 808, 1186, 1192
NlaIV GGNNCC 4 cut(s) 595, 619, 756, 802
NmuCI GTSAC 1 cut(s) 166
NruI TCGCGA 1 cut(s) 52
PcsI WCGNNNNNNNCGW 2 cut(s) 453, 705
PctI GAATGC 1 cut(s) 400
PdiI GCCGGC 1 cut(s) 598
PfoI TCCNGGA 1 cut(s) 771
PleI GAGTC 5 cut(s) 62, 341, 413, 581, 1163
PpsI GAGTC 5 cut(s) 62, 341, 413, 581, 1163
PshAI GACNNNNGTC 1 cut(s) 1184
Psp1406I AACGTT 1 cut(s) 1023
Psp6I CCWGG 6 cut(s) 68, 589, 750, 771, 1217, 1288
PspFI CCCAGC 2 cut(s) 219, 427
PspGI CCWGG 6 cut(s) 68, 589, 750, 771, 1217, 1288
PspN4I GGNNCC 4 cut(s) 595, 619, 756, 802
PspPI GGNCC 3 cut(s) 242, 587, 1085
PstI CTGCAG 1 cut(s) 241
PsuI RGATCY 2 cut(s) 514, 768
RruI TCGCGA 1 cut(s) 52
RsaI GTAC 3 cut(s) 5, 433, 1223
RsaNI GTAC 3 cut(s) 4, 432, 1222
RseI CAYNNNNRTG 1 cut(s) 1187
SaqAI TTAA 4 cut(s) 11, 372, 866, 1092
Sau3AI GATC 4 cut(s) 152, 514, 768, 1017
Sau96I GGNCC 3 cut(s) 242, 587, 1085
SchI GAGTC 5 cut(s) 63, 341, 413, 582, 1163
ScrFI CCNGG 9 cut(s) 59, 70, 591, 752, 773, 860, 1219, 1290, 1346
SduI GDGCHC 1 cut(s) 1148
SfaNI GCATC 1 cut(s) 317
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 2 cut(s) 242, 1085
SmiMI CAYNNNNRTG 1 cut(s) 1187
SmlI CTYRAG 2 cut(s) 865, 1091
SmoI CTYRAG 2 cut(s) 865, 1091
Sse9I AATT 2 cut(s) 275, 782
SsiI CCGC 5 cut(s) 340, 881, 1079, 1295, 1311
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 9 cut(s) 57, 68, 589, 750, 771, 858, 1217, 1288, 1344
StyI CCWWGG 3 cut(s) 21, 530, 1182
TaaI ACNGT 3 cut(s) 211, 268, 380
TaiI ACGT 5 cut(s) 307, 450, 711, 1026, 1119
TaqI TCGA 5 cut(s) 155, 204, 357, 561, 582
TasI AATT 2 cut(s) 275, 782
TauI GCSGC 3 cut(s) 342, 884, 1298
Tru1I TTAA 4 cut(s) 11, 372, 866, 1092
Tru9I TTAA 4 cut(s) 11, 372, 866, 1092
TscAI CASTG 7 cut(s) 273, 385, 832, 916, 1008, 1113, 1153
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 7 cut(s) 35, 215, 884, 917, 940, 1061, 1076
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 3 cut(s) 150, 702, 792
TspGWI ACGGA 3 cut(s) 309, 968, 1098
TspRI CASTG 7 cut(s) 273, 385, 832, 916, 1008, 1113, 1153
Vha464I CTTAAG 2 cut(s) 865, 1091
VneI GTGCAC 1 cut(s) 1144
VpaK11BI GGWCC 2 cut(s) 242, 1085
XapI RAATTY 1 cut(s) 782
XcmI CCANNNNNNNNNTGG 2 cut(s) 280, 748
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.