RLG00000002589

Belongs to the glyceraldehyde-3-phosphate dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009563
Physical Location & Seq
Forward (+)
36676405 .. 36679264
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002589

Sequence Viewer

Length: 1227 bp
ATGGCCTCCCACGCAGCTCTAGCTTCTTCAAGAATCCCAGCTAACACCAGGCTTCCCTCCAAGACCTCCCACTCTTTTCCCGCTCAATGCTTCTCCAAGAGGCTGGAAGTTGCTGAATTCTCTGGCTTGAGATCCAGTTCATGTTTGACCTATGCAACCAATGGTAGAGAGGCATCATTCTTTGATGCTGTGGCTGCTCAACTCACTCCCAAGATTTCAGGATCAGCTTCTGTTAAGGGAGAAACAGTGGCCAAATTGAAGGTGGCTATCAACGGATTTGGACGTATTGGCAGGAACTTTCTCCGATGCTGGCATGGCCGGAAGGATTCACCCCTTGAGGTCATTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCCCACTTGCTGAAATATGATTCTATGCTGGGTACTTTCAAAGCAGATATAAAAATAGTGGACAATGAAACTATCAGTGTTGATGGTAAGCCTGTCAAGGTTGTCTCTAACAGAGATCCCCTGAAGCTTCCATGGGCTGAGATGGGTATTGACATTGTTATTGAGGGAACAGGAGTTTTTGTTGATGGCCCTGGTGCTGGTAAACACATCCAAGCTGGTGCTAAGAAAGTTATCATTACAGCTCCAGCAAAAGGTGCTGATATTCCTACCTATGTTGTAGGAGTAAATGAAAAAGATTATGGCCATACCGTTGCAGACATTGTGAGCAACGCTTCCTGCACCACAAATTGTCTGGCTCCTTTTGTGAAGGTCCTCGATGAAGAATTCGGTATTGTCAAGGGAACCATGACAACTACTCATTCCTACACTGGAGACCAGAGACTGTTGGATGCTTCACACAGGGACTTGAGGAGAGCAAGGGCAGCAGCACTGAACATAGTGCCCACAAGCACTGGTGCAGCTAAGGCAGTGTCTCTAGTGCTGCCTCAGTTGAAAGGCAAGCTCAATGGCATTGCCCTCCGTGTGCCAACACCTAACGTGTCAGTAGTCGACCTTGTTATTAATGTTGCAAAGAAGGGCATTACAGCAGAAGATGTCAATGGAGCCTTCAGAAAGGCAGCTGATGGGCCACTGAAGGGCATATTGGCAGTGTGTGATGTTCCTCTTGTGTCTGTAGACTTCAGGTGCACCGATGTTTCCTCCACCATTGACTCTTCCTTGACTATGGTCATGGGTGATGATATGGTCAAGGTTGTGGCCTGGTACGACAACGAATGGGGATACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200
Pfam Domains
Protein Families
CP12 Gp_dh_C Gp_dh_N

Protein Analysis

409

Amino Acids

43.31

Weight (kDa)

9.02

Isoelectric Point (pI)

22.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gp_dh_N PF00044 87 - 188 5.3e-31 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C PF02800 244 - 401 1.1e-64 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 83
AccI GTMKAC 2 cut(s) 987, 1113
AciI CCGC 1 cut(s) 81
AclWI GGATC 3 cut(s) 126, 229, 488
AcoI YGGCCR 3 cut(s) 249, 316, 679
AcsI RAATTY 2 cut(s) 116, 761
AcuI CTGAAG 4 cut(s) 521, 1030, 1091, 1102
AfaI GTAC 2 cut(s) 412, 1202
AfiI CCNNNNNNNGG 3 cut(s) 575, 629, 1073
AflIII ACRYGT 1 cut(s) 975
AgsI TTSAA 4 cut(s) 30, 259, 418, 931
AjnI CCWGG 3 cut(s) 47, 568, 1196
AjuI GAANNNNNNNTTGG 2 cut(s) 1064, 1096
Alw21I GWGCWC 1 cut(s) 1127
Alw26I GTCTC 4 cut(s) 487, 804, 811, 915
Alw44I GTGCAC 1 cut(s) 1123
AlwI GGATC 3 cut(s) 126, 229, 488
AlwNI CAGNNNCTG 2 cut(s) 230, 820
AoxI GGCC 7 cut(s) 3, 249, 316, 565, 679, 1064, 1194
ApaLI GTGCAC 1 cut(s) 1123
ApeKI GCWGC 7 cut(s) 14, 194, 860, 863, 896, 919, 1055
ApoI RAATTY 2 cut(s) 116, 761
AseI ATTAAT 1 cut(s) 999
AspS9I GGNCC 3 cut(s) 566, 748, 1064
AsuHPI GGTGA 2 cut(s) 321, 1184
AvaII GGWCC 1 cut(s) 748
BaeGI GKGCMC 2 cut(s) 882, 1127
BalI TGGCCA 2 cut(s) 251, 681
Bbv12I GWGCWC 1 cut(s) 1127
BbvI GCAGC 7 cut(s) 26, 181, 872, 875, 906, 908, 1067
BccI CCATC 4 cut(s) 455, 514, 557, 1055
BciT130I CCWGG 3 cut(s) 49, 570, 1198
BciVI GTATCC 1 cut(s) 1211
BcoDI GTCTC 4 cut(s) 487, 804, 811, 915
BfaI CTAG 2 cut(s) 20, 914
BfmI CTRYAG 1 cut(s) 1110
BfuI GTATCC 1 cut(s) 1211
BisI GCNGC 7 cut(s) 15, 195, 861, 864, 897, 920, 1056
BlsI GCNGC 7 cut(s) 16, 196, 862, 865, 898, 921, 1057
Bme1390I CCNGG 3 cut(s) 49, 570, 1198
Bme18I GGWCC 1 cut(s) 748
BmgT120I GGNCC 3 cut(s) 566, 748, 1064
BmiI GGNNCC 3 cut(s) 735, 781, 1042
BmrFI CCNGG 3 cut(s) 49, 570, 1198
BmsI GCATC 4 cut(s) 175, 182, 296, 817
BoxI GACNNNNGTC 1 cut(s) 1163
BpmI CTGGAG 2 cut(s) 606, 828
Bpu10I CCTNAGC 1 cut(s) 900
BpuEI CTTGAG 3 cut(s) 148, 356, 865
BsaI GGTCTC 1 cut(s) 804
BsaJI CCNNGG 2 cut(s) 509, 568
BsaXI ACNNNNNCTCC 4 cut(s) 231, 261, 543, 573
Bsc4I CCNNNNNNNGG 3 cut(s) 575, 629, 1073
Bse1I ACTGG 3 cut(s) 135, 811, 895
Bse3DI GCAATG 1 cut(s) 948
BseBI CCWGG 3 cut(s) 49, 570, 1198
BseDI CCNNGG 2 cut(s) 509, 568
BseGI GGATG 2 cut(s) 585, 832
BseLI CCNNNNNNNGG 3 cut(s) 575, 629, 1073
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 2 cut(s) 507, 938
BseNI ACTGG 3 cut(s) 135, 811, 895
BseRI GAGGAG 1 cut(s) 862
BseSI GKGCMC 2 cut(s) 882, 1127
BseXI GCAGC 7 cut(s) 26, 181, 872, 875, 906, 908, 1067
BseYI CCCAGC 2 cut(s) 37, 406
BsgI GTGCAG 2 cut(s) 700, 915
BshFI GGCC 7 cut(s) 5, 251, 318, 567, 681, 1066, 1196
BsiHKAI GWGCWC 1 cut(s) 1127
BsiSI CCGG 1 cut(s) 319
BslFI GGGAC 1 cut(s) 854
BslI CCNNNNNNNGG 3 cut(s) 575, 629, 1073
BsmAI GTCTC 4 cut(s) 487, 804, 811, 915
BsmFI GGGAC 1 cut(s) 854
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 7 cut(s) 5, 251, 318, 567, 681, 1066, 1196
Bso31I GGTCTC 1 cut(s) 804
Bsp1286I GDGCHC 2 cut(s) 882, 1127
Bsp143I GATC 3 cut(s) 131, 221, 493
Bsp19I CCATGG 1 cut(s) 509
BspACI CCGC 1 cut(s) 81
BspANI GGCC 7 cut(s) 5, 251, 318, 567, 681, 1066, 1196
BspCNI CTCAG 2 cut(s) 508, 937
BspLI GGNNCC 3 cut(s) 735, 781, 1042
BspPI GGATC 3 cut(s) 126, 229, 488
BspTNI GGTCTC 1 cut(s) 804
BsrBI CCGCTC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 948
BsrI ACTGG 3 cut(s) 135, 811, 895
BssECI CCNNGG 2 cut(s) 509, 568
BssMI GATC 3 cut(s) 131, 221, 493
BssT1I CCWWGG 1 cut(s) 509
Bst2UI CCWGG 3 cut(s) 49, 570, 1198
Bst4CI ACNGT 4 cut(s) 247, 359, 688, 822
Bst6I CTCTTC 1 cut(s) 1156
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 311, 938
BstDEI CTNAG 4 cut(s) 516, 600, 900, 924
BstDSI CCRYGG 1 cut(s) 509
BstF5I GGATG 2 cut(s) 585, 832
BstKTI GATC 3 cut(s) 134, 224, 496
BstMAI GTCTC 4 cut(s) 487, 804, 811, 915
BstMBI GATC 3 cut(s) 131, 221, 493
BstMWI GCNNNNNNNGC 7 cut(s) 11, 20, 194, 315, 632, 860, 902
BstNI CCWGG 3 cut(s) 49, 570, 1198
BstPAI GACNNNNGTC 1 cut(s) 1163
BstSCI CCNGG 3 cut(s) 47, 568, 1196
BstSFI CTRYAG 1 cut(s) 1110
BstSLI GKGCMC 2 cut(s) 882, 1127
BstV1I GCAGC 7 cut(s) 26, 181, 872, 875, 906, 908, 1067
BstX2I RGATCY 2 cut(s) 131, 493
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 2 cut(s) 131, 493
BsuI GTATCC 1 cut(s) 1211
BsuRI GGCC 7 cut(s) 5, 251, 318, 567, 681, 1066, 1196
BtgI CCRYGG 1 cut(s) 509
BtsCI GGATG 2 cut(s) 585, 832
BtsI GCAGTG 2 cut(s) 912, 1092
BtsIMutI CAGTG 9 cut(s) 252, 364, 460, 804, 866, 888, 912, 1067, 1092
Cac8I GCNNGC 2 cut(s) 311, 938
CaiI CAGNNNCTG 2 cut(s) 230, 820
Cfr13I GGNCC 3 cut(s) 566, 748, 1064
Csp6I GTAC 2 cut(s) 411, 1201
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 5 cut(s) 141, 314, 510, 784, 1168
CviQI GTAC 2 cut(s) 411, 1201
DdeI CTNAG 4 cut(s) 516, 600, 900, 924
DpnI GATC 3 cut(s) 133, 223, 495
DpnII GATC 3 cut(s) 131, 221, 493
EaeI YGGCCR 3 cut(s) 249, 316, 679
Eam1104I CTCTTC 1 cut(s) 1156
EarI CTCTTC 1 cut(s) 1156
Eco130I CCWWGG 1 cut(s) 509
Eco31I GGTCTC 1 cut(s) 804
Eco47I GGWCC 1 cut(s) 748
Eco57I CTGAAG 4 cut(s) 521, 1030, 1091, 1102
EcoO109I RGGNCCY 1 cut(s) 748
EcoRI GAATTC 2 cut(s) 116, 761
EcoRII CCWGG 3 cut(s) 47, 568, 1196
EcoT14I CCWWGG 1 cut(s) 509
ErhI CCWWGG 1 cut(s) 509
FaeI CATG 5 cut(s) 144, 317, 513, 787, 1171
FaqI GGGAC 1 cut(s) 854
FatI CATG 5 cut(s) 140, 313, 509, 783, 1167
FauI CCCGC 1 cut(s) 88
FblI GTMKAC 2 cut(s) 987, 1113
Fnu4HI GCNGC 7 cut(s) 15, 195, 861, 864, 897, 920, 1056
FokI GGATG 2 cut(s) 572, 839
Fsp4HI GCNGC 7 cut(s) 15, 195, 861, 864, 897, 920, 1056
FspBI CTAG 2 cut(s) 20, 914
GluI GCNGC 7 cut(s) 15, 195, 861, 864, 897, 920, 1056
GsaI CCCAGC 2 cut(s) 41, 410
GsuI CTGGAG 2 cut(s) 606, 828
HaeIII GGCC 7 cut(s) 5, 251, 318, 567, 681, 1066, 1196
HapII CCGG 1 cut(s) 319
Hin1II CATG 5 cut(s) 144, 317, 513, 787, 1171
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 4 cut(s) 33, 326, 398, 1148
HpaII CCGG 1 cut(s) 319
HphI GGTGA 2 cut(s) 321, 1184
Hpy166II GTNNAC 5 cut(s) 439, 581, 988, 1114, 1125
Hpy188I TCNGA 2 cut(s) 305, 1049
Hpy188III TCNNGA 3 cut(s) 30, 219, 370
Hpy8I GTNNAC 5 cut(s) 439, 581, 988, 1114, 1125
HpyAV CCTTC 6 cut(s) 253, 316, 739, 1006, 1054, 1066
HpyCH4III ACNGT 4 cut(s) 247, 359, 688, 822
HpyCH4IV ACGT 2 cut(s) 283, 975
HpyCH4V TGCA 6 cut(s) 155, 692, 717, 896, 1007, 1125
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 20, 194, 315, 632, 860, 902
HpyF3I CTNAG 4 cut(s) 516, 600, 900, 924
HpySE526I ACGT 2 cut(s) 283, 975
Hsp92II CATG 5 cut(s) 144, 317, 513, 787, 1171
Kzo9I GATC 3 cut(s) 131, 221, 493
LmnI GCTCC 3 cut(s) 625, 739, 1040
Lsp1109I GCAGC 7 cut(s) 26, 181, 872, 875, 906, 908, 1067
LweI GCATC 4 cut(s) 175, 182, 296, 817
MaeI CTAG 2 cut(s) 20, 914
MaeII ACGT 2 cut(s) 283, 975
MalI GATC 3 cut(s) 133, 223, 495
MbiI CCGCTC 1 cut(s) 83
MboI GATC 3 cut(s) 131, 221, 493
MboII GAAGA 4 cut(s) 18, 770, 1040, 1143
MflI RGATCY 2 cut(s) 131, 493
MhlI GDGCHC 2 cut(s) 882, 1127
MlsI TGGCCA 2 cut(s) 251, 681
MluCI AATT 4 cut(s) 116, 254, 724, 761
MluNI TGGCCA 2 cut(s) 251, 681
MlyI GAGTC 1 cut(s) 1142
MmeI TCCRAC 1 cut(s) 804
Mox20I TGGCCA 2 cut(s) 251, 681
MscI TGGCCA 2 cut(s) 251, 681
MseI TTAA 2 cut(s) 234, 999
Msp20I TGGCCA 2 cut(s) 251, 681
MspA1I CMGCKG 1 cut(s) 1058
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 3 cut(s) 49, 570, 1198
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 3 cut(s) 49, 570, 1198
MwoI GCNNNNNNNGC 7 cut(s) 11, 20, 194, 315, 632, 860, 902
NcoI CCATGG 1 cut(s) 509
NdeII GATC 3 cut(s) 131, 221, 493
NlaIII CATG 5 cut(s) 144, 317, 513, 787, 1171
NlaIV GGNNCC 3 cut(s) 735, 781, 1042
PctI GAATGC 1 cut(s) 379
PfeI GAWTC 3 cut(s) 33, 326, 398
PkrI GCNGC 7 cut(s) 16, 196, 862, 865, 898, 921, 1057
PleI GAGTC 1 cut(s) 1142
PpsI GAGTC 1 cut(s) 1142
PpuMI RGGWCCY 1 cut(s) 748
PshAI GACNNNNGTC 1 cut(s) 1163
PshBI ATTAAT 1 cut(s) 999
Psp5II RGGWCCY 1 cut(s) 748
Psp6I CCWGG 3 cut(s) 47, 568, 1196
PspFI CCCAGC 2 cut(s) 37, 406
PspGI CCWGG 3 cut(s) 47, 568, 1196
PspN4I GGNNCC 3 cut(s) 735, 781, 1042
PspPI GGNCC 3 cut(s) 566, 748, 1064
PspPPI RGGWCCY 1 cut(s) 748
PstNI CAGNNNCTG 2 cut(s) 230, 820
PsuI RGATCY 2 cut(s) 131, 493
PvuII CAGCTG 1 cut(s) 1058
RsaI GTAC 2 cut(s) 412, 1202
RsaNI GTAC 2 cut(s) 411, 1201
SalI GTCGAC 1 cut(s) 986
SaqAI TTAA 2 cut(s) 234, 999
SatI GCNGC 7 cut(s) 15, 195, 861, 864, 897, 920, 1056
Sau3AI GATC 3 cut(s) 131, 221, 493
Sau96I GGNCC 3 cut(s) 566, 748, 1064
SchI GAGTC 1 cut(s) 1142
ScrFI CCNGG 3 cut(s) 49, 570, 1198
SduI GDGCHC 2 cut(s) 882, 1127
SfaNI GCATC 4 cut(s) 175, 182, 296, 817
SfcI CTRYAG 1 cut(s) 1110
SinI GGWCC 1 cut(s) 748
SmlI CTYRAG 3 cut(s) 127, 335, 844
SmoI CTYRAG 3 cut(s) 127, 335, 844
Sse9I AATT 4 cut(s) 116, 254, 724, 761
SsiI CCGC 1 cut(s) 81
SspMI CTAG 2 cut(s) 20, 914
StyD4I CCNGG 3 cut(s) 47, 568, 1196
StyI CCWWGG 1 cut(s) 509
TaaI ACNGT 4 cut(s) 247, 359, 688, 822
TaiI ACGT 2 cut(s) 286, 978
TaqI TCGA 2 cut(s) 753, 987
TasI AATT 4 cut(s) 116, 254, 724, 761
TfiI GAWTC 3 cut(s) 33, 326, 398
Tru1I TTAA 2 cut(s) 234, 999
Tru9I TTAA 2 cut(s) 234, 999
TscAI CASTG 9 cut(s) 252, 364, 460, 811, 873, 895, 912, 1074, 1092
TseI GCWGC 7 cut(s) 14, 194, 860, 863, 896, 919, 1055
TspDTI ATGAA 4 cut(s) 129, 459, 681, 771
TspGWI ACGGA 2 cut(s) 288, 947
TspRI CASTG 9 cut(s) 252, 364, 460, 811, 873, 895, 912, 1074, 1092
VneI GTGCAC 1 cut(s) 1123
VpaK11BI GGWCC 1 cut(s) 748
VspI ATTAAT 1 cut(s) 999
XapI RAATTY 2 cut(s) 116, 761
XcmI CCANNNNNNNNNTGG 2 cut(s) 259, 727
XmiI GTMKAC 2 cut(s) 987, 1113
XspI CTAG 2 cut(s) 20, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.