Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8396877.1

Orthogroup ID

OG0009563

Physical Location & Seq

Genomic Coordinates Forward (+)

83 .. 1214

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8396877.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggcctcccacgcagctctagcttcttcaagaatcccagccaacaccaggcttccctccaagacctcccactcttttcccgctcaatgcttctccaagaggctggaagttgctgaattctctggcttgagatccagttcatgtttgacctatgcaaccaatggtagacaggcatcattctttgatgctgtggctgctcaactcactcccaagacttcaggatcagctcctgttaagggagaaacggtggccaaattgaaggtggctatcaacggatttggacggattggcaggaactttctccgatgctggcatggccggaaggattcaccccttgaggtcattgttgtcaatgacagtggtggtgtcaagaatgcttcccacttgctgaaatatgattctatgctgggtactttcaaagcagatataaaaatagtggacaatgaaactatcagtgttgatggtaagcctgtcaaggttgtctctaacagagatcccttgaagcttccatgggctgagatgggcattgacattgttattgaggtaaatgactgctatacttggatcactacaaagaaaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

CP12 Gp_dh_C Gp_dh_N

Protein Analysis

194

Amino Acids

21.05

Weight (kDa)

9.54

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42970
fragaria_vesca	FvH4_5g25760
malus_domestica	MD06G1006400.v1.1 MD06G1006500.v1.1
prunus_persica	Prupe.5G008000_v2.0.a1 Prupe.5G008000_v2.0.a1
pyrus_communis	pycom06g00570 pycom16g26090
rosa_chinensis	RchiOBHm_Chr7g0216231
rosa_laevigata	RLG00000002589
rosa_multiflora	Rmu_co8396877.1_g000001 Rmu_co8412739.1_g000001 Rmu_sc0003545.1_g000007 Rmu_sc0009152.1_g000005
rosa_roxburghii	Rroxscaffold_3G00243570
rosa_rugosa	Rorug07G0159100.1 Rorug07G0159200
rosa_samantha	Rh7AG296400 Rh7BG288600 Rh7CG316800 Rh7DG299100
rosa_wichuraiana	Rw7G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	166
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	4 cut(s)	126, 229, 488, 572
AcoI	YGGCCR	2 cut(s)	249, 316
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	2 cut(s)	48, 236
AgsI	TTSAA	4 cut(s)	30, 259, 418, 502
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	4 cut(s)	17, 23, 227, 505
AluI	AGCT	4 cut(s)	17, 23, 227, 505
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	4 cut(s)	126, 229, 488, 572
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	3 cut(s)	3, 249, 316
ApeKI	GCWGC	2 cut(s)	14, 194
ApoI	RAATTY	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	321
BalI	TGGCCA	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	26, 181
BccI	CCATC	2 cut(s)	455, 514
BciT130I	CCWGG	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	1 cut(s)	20
BisI	GCNGC	2 cut(s)	15, 195
BlsI	GCNGC	2 cut(s)	16, 196
Bme1390I	CCNGG	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	3 cut(s)	175, 182, 296
BpuEI	CTTGAG	2 cut(s)	148, 356
BsaJI	CCNNGG	1 cut(s)	509
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 236
Bse1I	ACTGG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	509
BseLI	CCNNNNNNNGG	2 cut(s)	48, 236
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	26, 181
BseYI	CCCAGC	2 cut(s)	37, 406
BshFI	GGCC	3 cut(s)	5, 251, 318
BsiSI	CCGG	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	48, 236
BsmAI	GTCTC	1 cut(s)	487
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	3 cut(s)	5, 251, 318
Bsp143I	GATC	4 cut(s)	131, 221, 493, 564
Bsp19I	CCATGG	1 cut(s)	509
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	3 cut(s)	5, 251, 318
BspCNI	CTCAG	1 cut(s)	508
BspPI	GGATC	4 cut(s)	126, 229, 488, 572
BsrBI	CCGCTC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	509
BssMI	GATC	4 cut(s)	131, 221, 493, 564
BssT1I	CCWWGG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	2 cut(s)	247, 359
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	516
BstDSI	CCRYGG	1 cut(s)	509
BstKTI	GATC	4 cut(s)	134, 224, 496, 567
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	4 cut(s)	131, 221, 493, 564
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 20, 194, 315
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	26, 181
BstX2I	RGATCY	2 cut(s)	131, 493
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	2 cut(s)	131, 493
BsuRI	GGCC	3 cut(s)	5, 251, 318
BtgI	CCRYGG	1 cut(s)	509
BtsIMutI	CAGTG	2 cut(s)	364, 460
Cac8I	GCNNGC	1 cut(s)	311
CaiI	CAGNNNCTG	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	411
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	3 cut(s)	141, 314, 510
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	1 cut(s)	516
DpnI	GATC	4 cut(s)	133, 223, 495, 566
DpnII	GATC	4 cut(s)	131, 221, 493, 564
EaeI	YGGCCR	2 cut(s)	249, 316
Eco130I	CCWWGG	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	509
FaeI	CATG	3 cut(s)	144, 317, 513
FaiI	YATR	9 cut(s)	142, 153, 315, 396, 404, 428, 511, 558, 583
FatI	CATG	3 cut(s)	140, 313, 509
FauI	CCCGC	1 cut(s)	88
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	15, 195
Fsp4HI	GCNGC	2 cut(s)	15, 195
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	2 cut(s)	15, 195
GsaI	CCCAGC	2 cut(s)	41, 410
HaeIII	GGCC	3 cut(s)	5, 251, 318
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	3 cut(s)	144, 317, 513
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	3 cut(s)	33, 326, 398
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	1 cut(s)	321
Hpy166II	GTNNAC	2 cut(s)	167, 439
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	3 cut(s)	30, 219, 370
Hpy8I	GTNNAC	2 cut(s)	167, 439
HpyAV	CCTTC	2 cut(s)	253, 316
HpyCH4III	ACNGT	2 cut(s)	247, 359
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 20, 194, 315
HpyF3I	CTNAG	1 cut(s)	516
Hsp92II	CATG	3 cut(s)	144, 317, 513
Kzo9I	GATC	4 cut(s)	131, 221, 493, 564
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	2 cut(s)	26, 181
LweI	GCATC	3 cut(s)	175, 182, 296
MaeI	CTAG	1 cut(s)	20
MalI	GATC	4 cut(s)	133, 223, 495, 566
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	4 cut(s)	131, 221, 493, 564
MboII	GAAGA	1 cut(s)	18
MflI	RGATCY	2 cut(s)	131, 493
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	2 cut(s)	116, 254
MluNI	TGGCCA	1 cut(s)	251
MnlI	CCTC	6 cut(s)	16, 67, 76, 93, 331, 535
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	251
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	4 cut(s)	11, 20, 194, 315
NcoI	CCATGG	1 cut(s)	509
NdeII	GATC	4 cut(s)	131, 221, 493, 564
NlaIII	CATG	3 cut(s)	144, 317, 513
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	33, 326, 398
PkrI	GCNGC	2 cut(s)	16, 196
Psp6I	CCWGG	1 cut(s)	47
PspFI	CCCAGC	2 cut(s)	37, 406
PspGI	CCWGG	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	131, 493
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	15, 195
Sau3AI	GATC	4 cut(s)	131, 221, 493, 564
ScrFI	CCNGG	1 cut(s)	49
SfaNI	GCATC	3 cut(s)	175, 182, 296
SmlI	CTYRAG	2 cut(s)	127, 335
SmoI	CTYRAG	2 cut(s)	127, 335
Sse9I	AATT	2 cut(s)	116, 254
SsiI	CCGC	1 cut(s)	81
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	2 cut(s)	247, 359
TasI	AATT	2 cut(s)	116, 254
TfiI	GAWTC	3 cut(s)	33, 326, 398
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	2 cut(s)	364, 460
TseI	GCWGC	2 cut(s)	14, 194
TspDTI	ATGAA	2 cut(s)	129, 459
TspGWI	ACGGA	2 cut(s)	288, 298
TspRI	CASTG	2 cut(s)	364, 460
XapI	RAATTY	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.