Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009563

Physical Location & Seq

Genomic Coordinates Reverse (-)

33827011 .. 33829939

Gene Structure 2929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19347

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGCCTCCCACGCAGCTCTAGCTTATTCAAGAATCCCAGCCAACACCAGGCTTCCCTGCAAGACCTCCCACTCTTTTCCCGCTCAATGCTTCTCCAAGAGGCTGGAAGTTGCTGAATTCTCTGGCTTGAGATCCAGTTCATGTTTGACCTATGCAACCAATGGTAGAGAGGCATCATTCTTTGATGCTGTGGCTGCTCAACTCACTCCCAAGACTTCAGGATCAGCTCCTGTTAAGGGAGAGACGGTGGCCAAATTGAAGGTGGCTATCAACGGATTTGGACGGATTGGCAGGAACTTTCTCCGATGCTGGCATGGCCGGAAGGATTCACCCCTTGAGGTCATTGTTGTCAATGACAGTGGTGGAGTCAAGAATGCTTCCCACTTGCTGAAATATGATTCTATGCTGGGTACTTTCAAAGCAGATATAAAAGTAGTTGACAATGAAACTATCAGTGTTGATGGTAAGCCTGTCAAGGTTGTCTCTAACAGAGATCCCCTGAAGCTTCCATGGGCTGAGATGGGCATTGACATTGTTATTGAGGGAACAGGAGTTTTTGTGGATGGCCCTGGGGCTGGTAAACACATCCAAGCTGGTGCTAAGAAAGTTATCATTACAGCTCCAGCAAAAGGTGCCGATATTCCTACCTATGTTGTAGGAGTAAATGAAAAAGATTATGGCCATAGCGTTGCAGACATTGTGAGCAACGCTTCCTGCACCACAAATTGTCTGGCTCCTTTTGTGAAGGTCCTCGATGAAGAATTCGGTATTGTCAAGGGAACCATGACAACTACTCATTCCTACACTGGAGACCAGAGACTGTTGGATGCTTCACACAGGGACTTGAGGAGAGCACGGGCAGCAGCACTGAACATAGTGCCCACAAGCACTGGTGCAGCCAAGGCAGTGTCTCTAGTGCTGCCTCAGCTCAAAGGCAAGCTCAATGGCATTGCCCTCCGTGTGCCAACACCTAACGTGTCAGTAGTCGACCTTGTTATTAATGTTGCAAAGAAGGGCATTACAGCAGAAGATGTCAATGGAGCCTTCAGAAAGGCAGCTGATGGGCCACTGAAGGGCATATTGGCAGTGTGTGATGTTCCTCTTGTGTCTGTAGACTTCAGGTGCACCGATGTTTCCTCCACCATTGACTCTTCCTTGACTATGGTCATGGGTGATGATATGGTCAAGGTTGTGGCCTGGTACGACAACGAATGGGGATACAGCCAAAGGGTTGTGGATTTGGCACATTTGGTTGCAAGCAAGTGGCCAGGGACACCAGTAGTGGGAAGCGGAGACCCGTTGGAGGATTTCTGCAAGGATAACCCTGCTGATGAAGAGTGCAAAGTCTATGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

CP12 Gp_dh_C Gp_dh_N

Protein Analysis

452

Amino Acids

48.07

Weight (kDa)

7.96

Isoelectric Point (pI)

23.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_N	PF00044	87 - 188	4.6e-31	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C	PF02800	244 - 401	1.4e-64	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42970
fragaria_vesca	FvH4_5g25760
malus_domestica	MD06G1006400.v1.1 MD06G1006500.v1.1
prunus_persica	Prupe.5G008000_v2.0.a1 Prupe.5G008000_v2.0.a1
pyrus_communis	pycom06g00570 pycom16g26090
rosa_chinensis	RchiOBHm_Chr7g0216231
rosa_laevigata	RLG00000002589
rosa_multiflora	Rmu_co8396877.1_g000001 Rmu_co8412739.1_g000001 Rmu_sc0003545.1_g000007 Rmu_sc0009152.1_g000005
rosa_roxburghii	Rroxscaffold_3G00243570
rosa_rugosa	Rorug07G0159100.1 Rorug07G0159200
rosa_samantha	Rh7AG296400 Rh7BG288600 Rh7CG316800 Rh7DG299100
rosa_wichuraiana	Rw7G025220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	632
AccBSI	CCGCTC	1 cut(s)	83
AccI	GTMKAC	2 cut(s)	987, 1113
AciI	CCGC	2 cut(s)	81, 1290
AclWI	GGATC	3 cut(s)	126, 229, 488
AcoI	YGGCCR	4 cut(s)	249, 316, 679, 1265
AcsI	RAATTY	2 cut(s)	116, 761
AcuI	CTGAAG	5 cut(s)	201, 521, 1030, 1091, 1102
AfaI	GTAC	2 cut(s)	412, 1202
AfiI	CCNNNNNNNGG	7 cut(s)	48, 236, 575, 629, 1073, 1283, 1303
AflIII	ACRYGT	1 cut(s)	975
AgsI	TTSAA	3 cut(s)	30, 259, 418
AjnI	CCWGG	4 cut(s)	47, 568, 1196, 1267
AjuI	GAANNNNNNNTTGG	2 cut(s)	1064, 1096
Alw21I	GWGCWC	2 cut(s)	856, 1127
Alw26I	GTCTC	6 cut(s)	236, 487, 804, 811, 915, 1287
Alw44I	GTGCAC	1 cut(s)	1123
AlwI	GGATC	3 cut(s)	126, 229, 488
AlwNI	CAGNNNCTG	2 cut(s)	230, 820
AoxI	GGCC	8 cut(s)	3, 249, 316, 565, 679, 1064, 1194, 1265
ApaLI	GTGCAC	1 cut(s)	1123
ApeKI	GCWGC	7 cut(s)	14, 194, 860, 863, 896, 919, 1055
ApoI	RAATTY	2 cut(s)	116, 761
AseI	ATTAAT	1 cut(s)	999
AspS9I	GGNCC	3 cut(s)	566, 748, 1064
AsuHPI	GGTGA	2 cut(s)	321, 1184
AvaII	GGWCC	1 cut(s)	748
BaeGI	GKGCMC	2 cut(s)	882, 1127
BalI	TGGCCA	3 cut(s)	251, 681, 1267
BanI	GGYRCC	1 cut(s)	632
Bbv12I	GWGCWC	2 cut(s)	856, 1127
BbvCI	CCTCAGC	1 cut(s)	924
BbvI	GCAGC	7 cut(s)	26, 181, 872, 875, 906, 908, 1067
BccI	CCATC	4 cut(s)	455, 514, 557, 1055
BciT130I	CCWGG	4 cut(s)	49, 570, 1198, 1269
BciVI	GTATCC	1 cut(s)	1211
BcoDI	GTCTC	6 cut(s)	236, 487, 804, 811, 915, 1287
BfaI	CTAG	2 cut(s)	20, 914
BfmI	CTRYAG	1 cut(s)	1110
BfuI	GTATCC	1 cut(s)	1211
BisI	GCNGC	7 cut(s)	15, 195, 861, 864, 897, 920, 1056
BlsI	GCNGC	7 cut(s)	16, 196, 862, 865, 898, 921, 1057
Bme1390I	CCNGG	4 cut(s)	49, 570, 1198, 1269
Bme18I	GGWCC	1 cut(s)	748
BmgT120I	GGNCC	3 cut(s)	566, 748, 1064
BmiI	GGNNCC	4 cut(s)	634, 735, 781, 1042
BmrFI	CCNGG	4 cut(s)	49, 570, 1198, 1269
BmsI	GCATC	4 cut(s)	175, 182, 296, 817
BoxI	GACNNNNGTC	1 cut(s)	1163
BpmI	CTGGAG	2 cut(s)	606, 828
Bpu10I	CCTNAGC	1 cut(s)	924
BpuEI	CTTGAG	3 cut(s)	148, 356, 865
BsaI	GGTCTC	2 cut(s)	804, 1287
BsaJI	CCNNGG	5 cut(s)	509, 568, 569, 900, 1268
BsaXI	ACNNNNNCTCC	4 cut(s)	231, 261, 543, 573
Bsc4I	CCNNNNNNNGG	7 cut(s)	48, 236, 575, 629, 1073, 1283, 1303
Bse1I	ACTGG	4 cut(s)	135, 811, 895, 1277
Bse3DI	GCAATG	1 cut(s)	948
BseBI	CCWGG	4 cut(s)	49, 570, 1198, 1269
BseDI	CCNNGG	5 cut(s)	509, 568, 569, 900, 1268
BseGI	GGATG	3 cut(s)	568, 585, 832
BseLI	CCNNNNNNNGG	7 cut(s)	48, 236, 575, 629, 1073, 1283, 1303
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	2 cut(s)	507, 938
BseNI	ACTGG	4 cut(s)	135, 811, 895, 1277
BseRI	GAGGAG	1 cut(s)	862
BseSI	GKGCMC	2 cut(s)	882, 1127
BseXI	GCAGC	7 cut(s)	26, 181, 872, 875, 906, 908, 1067
BseYI	CCCAGC	2 cut(s)	37, 406
BsgI	GTGCAG	2 cut(s)	700, 915
BshFI	GGCC	8 cut(s)	5, 251, 318, 567, 681, 1066, 1196, 1267
BshNI	GGYRCC	1 cut(s)	632
BsiHKAI	GWGCWC	2 cut(s)	856, 1127
BsiSI	CCGG	1 cut(s)	319
BslFI	GGGAC	2 cut(s)	854, 1285
BslI	CCNNNNNNNGG	7 cut(s)	48, 236, 575, 629, 1073, 1283, 1303
BsmAI	GTCTC	6 cut(s)	236, 487, 804, 811, 915, 1287
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	2 cut(s)	854, 1285
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	8 cut(s)	5, 251, 318, 567, 681, 1066, 1196, 1267
Bso31I	GGTCTC	2 cut(s)	804, 1287
Bsp1286I	GDGCHC	3 cut(s)	856, 882, 1127
Bsp143I	GATC	3 cut(s)	131, 221, 493
Bsp19I	CCATGG	1 cut(s)	509
BspACI	CCGC	2 cut(s)	81, 1290
BspANI	GGCC	8 cut(s)	5, 251, 318, 567, 681, 1066, 1196, 1267
BspCNI	CTCAG	2 cut(s)	508, 937
BspLI	GGNNCC	4 cut(s)	634, 735, 781, 1042
BspPI	GGATC	3 cut(s)	126, 229, 488
BspT107I	GGYRCC	1 cut(s)	632
BspTNI	GGTCTC	2 cut(s)	804, 1287
BsrBI	CCGCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	948
BsrI	ACTGG	4 cut(s)	135, 811, 895, 1277
BssECI	CCNNGG	5 cut(s)	509, 568, 569, 900, 1268
BssMI	GATC	3 cut(s)	131, 221, 493
BssT1I	CCWWGG	2 cut(s)	509, 900
Bst2UI	CCWGG	4 cut(s)	49, 570, 1198, 1269
Bst4CI	ACNGT	3 cut(s)	247, 359, 822
Bst6I	CTCTTC	2 cut(s)	1156, 1329
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstC8I	GCNNGC	3 cut(s)	311, 938, 1258
BstDEI	CTNAG	4 cut(s)	516, 600, 924, 1356
BstDSI	CCRYGG	1 cut(s)	509
BstF5I	GGATG	3 cut(s)	568, 585, 832
BstKTI	GATC	3 cut(s)	134, 224, 496
BstMAI	GTCTC	6 cut(s)	236, 487, 804, 811, 915, 1287
BstMBI	GATC	3 cut(s)	131, 221, 493
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 20, 194, 315, 632, 860, 902, 925
BstNI	CCWGG	4 cut(s)	49, 570, 1198, 1269
BstPAI	GACNNNNGTC	1 cut(s)	1163
BstSCI	CCNGG	4 cut(s)	47, 568, 1196, 1267
BstSFI	CTRYAG	1 cut(s)	1110
BstSLI	GKGCMC	2 cut(s)	882, 1127
BstV1I	GCAGC	7 cut(s)	26, 181, 872, 875, 906, 908, 1067
BstX2I	RGATCY	2 cut(s)	131, 493
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	2 cut(s)	131, 493
BsuI	GTATCC	1 cut(s)	1211
BsuRI	GGCC	8 cut(s)	5, 251, 318, 567, 681, 1066, 1196, 1267
BtgI	CCRYGG	1 cut(s)	509
BtsCI	GGATG	3 cut(s)	568, 585, 832
BtsI	GCAGTG	2 cut(s)	912, 1092
BtsIMutI	CAGTG	8 cut(s)	364, 460, 804, 866, 888, 912, 1067, 1092
Cac8I	GCNNGC	3 cut(s)	311, 938, 1258
CaiI	CAGNNNCTG	2 cut(s)	230, 820
Cfr13I	GGNCC	3 cut(s)	566, 748, 1064
Csp6I	GTAC	2 cut(s)	411, 1201
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	5 cut(s)	141, 314, 510, 784, 1168
CviQI	GTAC	2 cut(s)	411, 1201
DdeI	CTNAG	4 cut(s)	516, 600, 924, 1356
DpnI	GATC	3 cut(s)	133, 223, 495
DpnII	GATC	3 cut(s)	131, 221, 493
EaeI	YGGCCR	4 cut(s)	249, 316, 679, 1265
Eam1104I	CTCTTC	2 cut(s)	1156, 1329
EarI	CTCTTC	2 cut(s)	1156, 1329
Eco130I	CCWWGG	2 cut(s)	509, 900
Eco31I	GGTCTC	2 cut(s)	804, 1287
Eco47I	GGWCC	1 cut(s)	748
Eco57I	CTGAAG	5 cut(s)	201, 521, 1030, 1091, 1102
EcoO109I	RGGNCCY	1 cut(s)	748
EcoRI	GAATTC	2 cut(s)	116, 761
EcoRII	CCWGG	4 cut(s)	47, 568, 1196, 1267
EcoT14I	CCWWGG	2 cut(s)	509, 900
ErhI	CCWWGG	2 cut(s)	509, 900
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	5 cut(s)	144, 317, 513, 787, 1171
FaqI	GGGAC	2 cut(s)	854, 1285
FatI	CATG	5 cut(s)	140, 313, 509, 783, 1167
FauI	CCCGC	1 cut(s)	88
FblI	GTMKAC	2 cut(s)	987, 1113
Fnu4HI	GCNGC	7 cut(s)	15, 195, 861, 864, 897, 920, 1056
FokI	GGATG	3 cut(s)	572, 575, 839
Fsp4HI	GCNGC	7 cut(s)	15, 195, 861, 864, 897, 920, 1056
FspBI	CTAG	2 cut(s)	20, 914
GluI	GCNGC	7 cut(s)	15, 195, 861, 864, 897, 920, 1056
GsaI	CCCAGC	2 cut(s)	41, 410
GsuI	CTGGAG	2 cut(s)	606, 828
HaeIII	GGCC	8 cut(s)	5, 251, 318, 567, 681, 1066, 1196, 1267
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	5 cut(s)	144, 317, 513, 787, 1171
HincII	GTYRAC	2 cut(s)	439, 988
HindII	GTYRAC	2 cut(s)	439, 988
HindIII	AAGCTT	2 cut(s)	503, 1353
HinfI	GANTC	5 cut(s)	33, 326, 366, 398, 1148
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	2 cut(s)	321, 1184
Hpy166II	GTNNAC	5 cut(s)	439, 581, 988, 1114, 1125
Hpy188I	TCNGA	2 cut(s)	305, 1049
Hpy188III	TCNNGA	3 cut(s)	30, 219, 370
Hpy8I	GTNNAC	5 cut(s)	439, 581, 988, 1114, 1125
HpyAV	CCTTC	6 cut(s)	253, 316, 739, 1006, 1054, 1066
HpyCH4III	ACNGT	3 cut(s)	247, 359, 822
HpyCH4IV	ACGT	1 cut(s)	975
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 20, 194, 315, 632, 860, 902, 925
HpyF3I	CTNAG	4 cut(s)	516, 600, 924, 1356
HpySE526I	ACGT	1 cut(s)	975
Hsp92II	CATG	5 cut(s)	144, 317, 513, 787, 1171
Kzo9I	GATC	3 cut(s)	131, 221, 493
LmnI	GCTCC	4 cut(s)	232, 625, 739, 1040
Lsp1109I	GCAGC	7 cut(s)	26, 181, 872, 875, 906, 908, 1067
LweI	GCATC	4 cut(s)	175, 182, 296, 817
MaeI	CTAG	2 cut(s)	20, 914
MaeII	ACGT	1 cut(s)	975
MalI	GATC	3 cut(s)	133, 223, 495
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	3 cut(s)	131, 221, 493
MboII	GAAGA	4 cut(s)	770, 1040, 1143, 1346
MflI	RGATCY	2 cut(s)	131, 493
MhlI	GDGCHC	3 cut(s)	856, 882, 1127
MlsI	TGGCCA	3 cut(s)	251, 681, 1267
MluCI	AATT	4 cut(s)	116, 254, 724, 761
MluNI	TGGCCA	3 cut(s)	251, 681, 1267
MlyI	GAGTC	2 cut(s)	375, 1142
MmeI	TCCRAC	2 cut(s)	804, 1281
Mox20I	TGGCCA	3 cut(s)	251, 681, 1267
MscI	TGGCCA	3 cut(s)	251, 681, 1267
MseI	TTAA	2 cut(s)	234, 999
Msp20I	TGGCCA	3 cut(s)	251, 681, 1267
MspA1I	CMGCKG	1 cut(s)	1058
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	4 cut(s)	49, 570, 1198, 1269
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	4 cut(s)	49, 570, 1198, 1269
MwoI	GCNNNNNNNGC	8 cut(s)	11, 20, 194, 315, 632, 860, 902, 925
NcoI	CCATGG	1 cut(s)	509
NdeII	GATC	3 cut(s)	131, 221, 493
NlaIII	CATG	5 cut(s)	144, 317, 513, 787, 1171
NlaIV	GGNNCC	4 cut(s)	634, 735, 781, 1042
PasI	CCCWGGG	1 cut(s)	569
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	3 cut(s)	33, 326, 398
PkrI	GCNGC	7 cut(s)	16, 196, 862, 865, 898, 921, 1057
PleI	GAGTC	2 cut(s)	374, 1142
PpsI	GAGTC	2 cut(s)	374, 1142
PpuMI	RGGWCCY	1 cut(s)	748
PshAI	GACNNNNGTC	1 cut(s)	1163
PshBI	ATTAAT	1 cut(s)	999
Psp5II	RGGWCCY	1 cut(s)	748
Psp6I	CCWGG	4 cut(s)	47, 568, 1196, 1267
PspFI	CCCAGC	2 cut(s)	37, 406
PspGI	CCWGG	4 cut(s)	47, 568, 1196, 1267
PspN4I	GGNNCC	4 cut(s)	634, 735, 781, 1042
PspPI	GGNCC	3 cut(s)	566, 748, 1064
PspPPI	RGGWCCY	1 cut(s)	748
PstNI	CAGNNNCTG	2 cut(s)	230, 820
PsuI	RGATCY	2 cut(s)	131, 493
PvuII	CAGCTG	1 cut(s)	1058
RsaI	GTAC	2 cut(s)	412, 1202
RsaNI	GTAC	2 cut(s)	411, 1201
SalI	GTCGAC	1 cut(s)	986
SaqAI	TTAA	2 cut(s)	234, 999
SatI	GCNGC	7 cut(s)	15, 195, 861, 864, 897, 920, 1056
Sau3AI	GATC	3 cut(s)	131, 221, 493
Sau96I	GGNCC	3 cut(s)	566, 748, 1064
SchI	GAGTC	2 cut(s)	375, 1142
ScrFI	CCNGG	4 cut(s)	49, 570, 1198, 1269
SduI	GDGCHC	3 cut(s)	856, 882, 1127
SfaNI	GCATC	4 cut(s)	175, 182, 296, 817
SfcI	CTRYAG	1 cut(s)	1110
SinI	GGWCC	1 cut(s)	748
SmlI	CTYRAG	3 cut(s)	127, 335, 844
SmoI	CTYRAG	3 cut(s)	127, 335, 844
Sse9I	AATT	4 cut(s)	116, 254, 724, 761
SsiI	CCGC	2 cut(s)	81, 1290
SspMI	CTAG	2 cut(s)	20, 914
StyD4I	CCNGG	4 cut(s)	47, 568, 1196, 1267
StyI	CCWWGG	2 cut(s)	509, 900
TaaI	ACNGT	3 cut(s)	247, 359, 822
TaiI	ACGT	1 cut(s)	978
TaqI	TCGA	2 cut(s)	753, 987
TasI	AATT	4 cut(s)	116, 254, 724, 761
TfiI	GAWTC	3 cut(s)	33, 326, 398
Tru1I	TTAA	2 cut(s)	234, 999
Tru9I	TTAA	2 cut(s)	234, 999
TscAI	CASTG	8 cut(s)	364, 460, 811, 873, 895, 912, 1074, 1092
TseI	GCWGC	7 cut(s)	14, 194, 860, 863, 896, 919, 1055
TspDTI	ATGAA	5 cut(s)	129, 459, 681, 771, 1347
TspGWI	ACGGA	3 cut(s)	288, 298, 947
TspRI	CASTG	8 cut(s)	364, 460, 811, 873, 895, 912, 1074, 1092
VneI	GTGCAC	1 cut(s)	1123
VpaK11BI	GGWCC	1 cut(s)	748
VspI	ATTAAT	1 cut(s)	999
XapI	RAATTY	2 cut(s)	116, 761
XcmI	CCANNNNNNNNNTGG	2 cut(s)	259, 727
XmiI	GTMKAC	2 cut(s)	987, 1113
XspI	CTAG	2 cut(s)	20, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.