FvH4_5g29950

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017313
Physical Location & Seq
Forward (+)
20829127 .. 20830070
944 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29950.t1

Sequence Viewer

Length: 501 bp
ATGGCGGCCGCCAAGGCGTTGAAGAAGGTGGAGAAGATCCGCCAGATAGTGCGGCTCAAGCAAATCATGATCCGCTGGAAGCTCACCAGCCTCCGCCTCCGCCCCGCTCTCTCTTTTTACAACGACGACGATTCCGCCTCCTCCGGCTCCGCCCGCCGCACCCCCTCCGGGTTCCTAGCCGTCTACGTCGGACCGGTGCGGAGGCGCTTCGTCATTCCGGCCCGGTTCGTCAACCTCCCGGTCTTCGTCGACTTGCTGGAGAAGACCGCCGAGGAGTTCGGCTTCGAAACCACCGGCGGCCTCGTCTTGCCTTGCGAGGTTTCGTTTTTCAAGGAGATCCTGAGGTTTCTGGAGAAGGACGAGAGGAGGTTTGGCAAGTTGTCGCTGGATGAGTTCTTGAAGATGGTGACTGATGCGGTGGGATTCGATTCTTGCAAGGCGGCGGCGGCTTCCGGCGCCTCCGCATCGTTCTCTCCTCTGTTGCAGGAAGCTAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

167

Amino Acids

18.51

Weight (kDa)

9.77

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 18 - 117 1.6e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017313)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g29950
malus_domestica MD16G1240600.v1.1
prunus_persica Prupe.1G000200_v2.0.a1 Prupe.1G067400_v2.0.a1
pyrus_communis pycom13g20840
rosa_chinensis RchiOBHm_Chr7g0223781
rosa_laevigata RLG00000001947
rosa_multiflora Rmu_sc0010556.1_g000005
rosa_roxburghii Rroxscaffold_3G00235350
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363000 Rh7CG381400
rosa_wichuraiana Rw7G030810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 455
AccBSI CCGCTC 1 cut(s) 107
AccI GTMKAC 2 cut(s) 183, 249
AclWI GGATC 3 cut(s) 31, 64, 331
AcoI YGGCCR 1 cut(s) 6
AcyI GRCGYC 1 cut(s) 456
AfiI CCNNNNNNNGG 1 cut(s) 168
AgeI ACCGGT 1 cut(s) 193
AgsI TTSAA 3 cut(s) 22, 331, 400
AluBI AGCT 2 cut(s) 82, 491
AluI AGCT 2 cut(s) 82, 491
AlwI GGATC 3 cut(s) 31, 64, 331
AoxI GGCC 3 cut(s) 6, 219, 298
AsiGI ACCGGT 1 cut(s) 193
AspLEI GCGC 2 cut(s) 207, 458
AspS9I GGNCC 2 cut(s) 191, 220
AsuC2I CCSGG 3 cut(s) 169, 223, 239
AsuHPI GGTGA 2 cut(s) 76, 418
AsuII TTCGAA 1 cut(s) 285
AvaII GGWCC 1 cut(s) 191
AxyI CCTNAGG 1 cut(s) 341
BanI GGYRCC 1 cut(s) 455
BbsI GAAGAC 2 cut(s) 235, 269
BccI CCATC 1 cut(s) 397
BceAI ACGGC 1 cut(s) 164
BcnI CCSGG 3 cut(s) 169, 223, 239
BfaI CTAG 2 cut(s) 176, 492
BfoI RGCGCY 2 cut(s) 208, 459
BglI GCCNNNNNGGC 1 cut(s) 14
BisI GCNGC 8 cut(s) 6, 9, 53, 157, 298, 441, 444, 447
BlsI GCNGC 8 cut(s) 7, 10, 54, 158, 299, 442, 445, 448
Bme1390I CCNGG 3 cut(s) 169, 223, 239
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 191, 220
BmiI GGNNCC 3 cut(s) 148, 173, 457
BmrFI CCNGG 3 cut(s) 169, 223, 239
BmsI GCATC 2 cut(s) 403, 473
BpiI GAAGAC 2 cut(s) 235, 269
BpmI CTGGAG 2 cut(s) 278, 371
Bpu14I TTCGAA 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 3 cut(s) 169, 223, 239
BsaHI GRCGYC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 12, 270
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse118I RCCGGY 2 cut(s) 193, 293
Bse21I CCTNAGG 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 12, 270
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 332
BseRI GAGGAG 4 cut(s) 130, 287, 379, 465
BseX3I CGGCCG 1 cut(s) 6
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 3 cut(s) 8, 221, 300
BshNI GGYRCC 1 cut(s) 455
BshTI ACCGGT 1 cut(s) 193
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 8 cut(s) 144, 168, 194, 218, 223, 239, 294, 453
BslI CCNNNNNNNGG 1 cut(s) 168
BsnI GGCC 3 cut(s) 8, 221, 300
Bsp119I TTCGAA 1 cut(s) 285
Bsp143I GATC 3 cut(s) 36, 69, 336
BspANI GGCC 3 cut(s) 8, 221, 300
BspCNI CTCAG 1 cut(s) 333
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 3 cut(s) 148, 173, 457
BspPI GGATC 3 cut(s) 31, 64, 331
BspT104I TTCGAA 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 107
BsrFI RCCGGY 2 cut(s) 193, 293
BssAI RCCGGY 2 cut(s) 193, 293
BssECI CCNNGG 2 cut(s) 12, 270
BssMI GATC 3 cut(s) 36, 69, 336
BssNI GRCGYC 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 12
BstACI GRCGYC 1 cut(s) 456
BstBI TTCGAA 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 341
BstF5I GGATG 1 cut(s) 394
BstH2I RGCGCY 2 cut(s) 208, 459
BstHHI GCGC 2 cut(s) 207, 458
BstKTI GATC 3 cut(s) 39, 72, 339
BstMBI GATC 3 cut(s) 36, 69, 336
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 5 cut(s) 14, 58, 153, 446, 455
BstSCI CCNGG 3 cut(s) 167, 221, 237
BstV2I GAAGAC 2 cut(s) 235, 269
BstX2I RGATCY 2 cut(s) 36, 336
BstYI RGATCY 2 cut(s) 36, 336
BstZI CGGCCG 1 cut(s) 6
Bsu36I CCTNAGG 1 cut(s) 341
BsuRI GGCC 3 cut(s) 8, 221, 300
BtsCI GGATG 1 cut(s) 394
Cac8I GCNNGC 1 cut(s) 154
CciI TCATGA 1 cut(s) 66
CciNI GCGGCCGC 1 cut(s) 6
CfoI GCGC 2 cut(s) 207, 458
Cfr10I RCCGGY 2 cut(s) 193, 293
Cfr13I GGNCC 2 cut(s) 191, 220
CpoI CGGWCCG 1 cut(s) 191
CspAI ACCGGT 1 cut(s) 193
CspI CGGWCCG 1 cut(s) 191
CviAII CATG 1 cut(s) 67
DdeI CTNAG 1 cut(s) 341
DinI GGCGCC 1 cut(s) 457
DpnI GATC 3 cut(s) 38, 71, 338
DpnII GATC 3 cut(s) 36, 69, 336
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
EciI GGCGGA 5 cut(s) 29, 83, 89, 124, 139
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 191
Eco52I CGGCCG 1 cut(s) 6
Eco81I CCTNAGG 1 cut(s) 341
EcoT14I CCWWGG 1 cut(s) 12
EgeI GGCGCC 1 cut(s) 457
EheI GGCGCC 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 1 cut(s) 70
FaiI YATR 1 cut(s) 68
FatI CATG 1 cut(s) 66
FauI CCCGC 2 cut(s) 112, 161
FblI GTMKAC 2 cut(s) 183, 249
Fnu4HI GCNGC 8 cut(s) 6, 9, 53, 157, 298, 441, 444, 447
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 8 cut(s) 6, 9, 53, 157, 298, 441, 444, 447
FspBI CTAG 2 cut(s) 176, 492
GlaI GCGC 2 cut(s) 206, 457
GluI GCNGC 8 cut(s) 6, 9, 53, 157, 298, 441, 444, 447
GsuI CTGGAG 2 cut(s) 278, 371
HaeII RGCGCY 2 cut(s) 208, 459
HaeIII GGCC 3 cut(s) 8, 221, 300
HapII CCGG 8 cut(s) 144, 168, 194, 218, 223, 239, 294, 453
HhaI GCGC 2 cut(s) 207, 458
Hin1I GRCGYC 1 cut(s) 456
Hin1II CATG 1 cut(s) 70
Hin6I GCGC 2 cut(s) 205, 456
HinP1I GCGC 2 cut(s) 205, 456
HincII GTYRAC 2 cut(s) 232, 250
HindII GTYRAC 2 cut(s) 232, 250
HinfI GANTC 3 cut(s) 131, 423, 428
HpaII CCGG 8 cut(s) 144, 168, 194, 218, 223, 239, 294, 453
HphI GGTGA 2 cut(s) 76, 418
Hpy166II GTNNAC 3 cut(s) 184, 232, 250
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 4 cut(s) 67, 340, 350, 397
Hpy8I GTNNAC 3 cut(s) 184, 232, 250
Hpy99I CGWCG 4 cut(s) 128, 131, 191, 251
HpyAV CCTTC 2 cut(s) 19, 349
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 435, 484
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 58, 153, 446, 455
HpyF3I CTNAG 1 cut(s) 341
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 456
Hsp92II CATG 1 cut(s) 70
HspAI GCGC 2 cut(s) 205, 456
KasI GGCGCC 1 cut(s) 455
Kzo9I GATC 3 cut(s) 36, 69, 336
LmnI GCTCC 1 cut(s) 152
LweI GCATC 2 cut(s) 403, 473
MaeI CTAG 2 cut(s) 176, 492
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 406
MalI GATC 3 cut(s) 38, 71, 338
MbiI CCGCTC 1 cut(s) 107
MboI GATC 3 cut(s) 36, 69, 336
MboII GAAGA 5 cut(s) 34, 46, 235, 274, 412
MflI RGATCY 2 cut(s) 36, 336
Mly113I GGCGCC 1 cut(s) 456
MmeI TCCRAC 1 cut(s) 169
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 8 cut(s) 144, 168, 194, 218, 223, 239, 294, 453
MspR9I CCNGG 3 cut(s) 169, 223, 239
MwoI GCNNNNNNNGC 5 cut(s) 14, 58, 153, 446, 455
NarI GGCGCC 1 cut(s) 456
NciI CCSGG 3 cut(s) 169, 223, 239
NdeII GATC 3 cut(s) 36, 69, 336
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 3 cut(s) 148, 173, 457
NmeAIII GCCGAG 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 406
NotI GCGGCCGC 1 cut(s) 6
NspV TTCGAA 1 cut(s) 285
PagI TCATGA 1 cut(s) 66
PfeI GAWTC 3 cut(s) 131, 423, 428
PinAI ACCGGT 1 cut(s) 193
PkrI GCNGC 8 cut(s) 7, 10, 54, 158, 299, 442, 445, 448
PluTI GGCGCC 1 cut(s) 459
PspN4I GGNNCC 3 cut(s) 148, 173, 457
PspPI GGNCC 2 cut(s) 191, 220
PsuI RGATCY 2 cut(s) 36, 336
Rsr2I CGGWCCG 1 cut(s) 191
RsrII CGGWCCG 1 cut(s) 191
SalI GTCGAC 1 cut(s) 248
SatI GCNGC 8 cut(s) 6, 9, 53, 157, 298, 441, 444, 447
Sau3AI GATC 3 cut(s) 36, 69, 336
Sau96I GGNCC 2 cut(s) 191, 220
ScrFI CCNGG 3 cut(s) 169, 223, 239
SetI ASST 8 cut(s) 30, 84, 189, 237, 321, 347, 371, 493
SfaNI GCATC 2 cut(s) 403, 473
SfoI GGCGCC 1 cut(s) 457
SfuI TTCGAA 1 cut(s) 285
SgrAI CRCCGGYG 1 cut(s) 293
SinI GGWCC 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SspDI GGCGCC 1 cut(s) 455
SspMI CTAG 2 cut(s) 176, 492
StyD4I CCNGG 3 cut(s) 167, 221, 237
StyI CCWWGG 1 cut(s) 12
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 249, 285, 426
TauI GCSGC 8 cut(s) 8, 11, 55, 159, 300, 443, 446, 449
TfiI GAWTC 3 cut(s) 131, 423, 428
TseFI GTSAC 1 cut(s) 406
Tsp45I GTSAC 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 191
XmiI GTMKAC 2 cut(s) 183, 249
XspI CTAG 2 cut(s) 176, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.