Rmu_sc0010556.1_g000005

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010556.1
OG0017313
Physical Location & Seq
Forward (+)
26016 .. 26516
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010556.1_g000005.1.cds

Sequence Viewer

Length: 501 bp
atggcgatgaagaaggtggagaagatcaggcagatagtgcggctgaagcaaatcatgatgcgctggaagctggccagcctccgcctccgcctccgtcccgctctctcctacgacgacgattccgactcctcctcctccggctccggctcttccacccgacgcactcccgccgggttcttagctgtctacgtcggaccggagcgcaggaggtttgtgattccggccaggttcgtcaaccttccggttttcgtcggcttgctggagaaggccgccgaggagttcggcttcgaaaccaccggcggcctcgtcctgccttgcgaagttgcatttttcaaggatgtcctcaagtttctggagaaagacgagaggaagttcgggaaattggcgctggatgagttcttgaagatggtgactgacgcggtgggattcgattcttgcaaggcggcggcgtctggcgccggctcttcgttcactcctctattgcaggatgctagggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

166

Amino Acids

18.42

Weight (kDa)

9.61

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017313)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g29950
malus_domestica MD16G1240600.v1.1
prunus_persica Prupe.1G000200_v2.0.a1 Prupe.1G067400_v2.0.a1
pyrus_communis pycom13g20840
rosa_chinensis RchiOBHm_Chr7g0223781
rosa_laevigata RLG00000001947
rosa_multiflora Rmu_sc0010556.1_g000005
rosa_roxburghii Rroxscaffold_3G00235350
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363000 Rh7CG381400
rosa_wichuraiana Rw7G030810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 455
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 419
AcoI YGGCCR 2 cut(s) 72, 222
AcuI CTGAAG 1 cut(s) 65
AcyI GRCGYC 2 cut(s) 449, 456
AgsI TTSAA 2 cut(s) 334, 403
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 2 cut(s) 70, 182
AluI AGCT 2 cut(s) 70, 182
AoxI GGCC 4 cut(s) 72, 222, 267, 301
AspLEI GCGC 4 cut(s) 63, 204, 388, 458
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 421
AsuII TTCGAA 1 cut(s) 288
AvaII GGWCC 1 cut(s) 194
BalI TGGCCA 1 cut(s) 74
BanI GGYRCC 1 cut(s) 455
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 1 cut(s) 172
BfaI CTAG 1 cut(s) 492
BfoI RGCGCY 2 cut(s) 389, 459
BisI GCNGC 5 cut(s) 41, 270, 301, 444, 447
BlsI GCNGC 5 cut(s) 42, 271, 302, 445, 448
Bme1390I CCNGG 2 cut(s) 172, 226
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 142, 457
BmrFI CCNGG 2 cut(s) 172, 226
BmsI GCATC 2 cut(s) 48, 478
BpmI CTGGAG 2 cut(s) 281, 374
Bpu14I TTCGAA 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 329
BpuMI CCSGG 1 cut(s) 172
BsaHI GRCGYC 2 cut(s) 449, 456
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 2 cut(s) 196, 241
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse118I RCCGGY 2 cut(s) 296, 458
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 3 cut(s) 343, 397, 493
BseRI GAGGAG 5 cut(s) 118, 121, 124, 290, 465
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 4 cut(s) 74, 224, 269, 303
BshNI GGYRCC 1 cut(s) 455
BsiSI CCGG 8 cut(s) 138, 144, 171, 197, 221, 242, 297, 459
BslFI GGGAC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 4 cut(s) 74, 224, 269, 303
Bsp119I TTCGAA 1 cut(s) 288
Bsp143I GATC 1 cut(s) 24
BspANI GGCC 4 cut(s) 74, 224, 269, 303
BspFNI CGCG 1 cut(s) 419
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 142, 457
BspQI GCTCTTC 2 cut(s) 154, 469
BspT104I TTCGAA 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 455
BsrBI CCGCTC 1 cut(s) 101
BsrFI RCCGGY 2 cut(s) 296, 458
BssAI RCCGGY 2 cut(s) 296, 458
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 1 cut(s) 24
BssNI GRCGYC 2 cut(s) 449, 456
Bst2UI CCWGG 1 cut(s) 226
Bst6I CTCTTC 2 cut(s) 154, 469
BstACI GRCGYC 2 cut(s) 449, 456
BstAPI GCANNNNNTGC 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 4 cut(s) 72, 76, 257, 460
BstDEI CTNAG 1 cut(s) 178
BstF5I GGATG 3 cut(s) 343, 397, 493
BstFNI CGCG 1 cut(s) 419
BstH2I RGCGCY 2 cut(s) 389, 459
BstHHI GCGC 4 cut(s) 63, 204, 388, 458
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 4 cut(s) 37, 46, 67, 455
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 170, 224
BstUI CGCG 1 cut(s) 419
BsuRI GGCC 4 cut(s) 74, 224, 269, 303
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 343, 397, 493
Cac8I GCNNGC 4 cut(s) 72, 76, 257, 460
CciI TCATGA 1 cut(s) 54
CfoI GCGC 4 cut(s) 63, 204, 388, 458
Cfr10I RCCGGY 2 cut(s) 296, 458
Cfr13I GGNCC 1 cut(s) 194
CpoI CGGWCCG 1 cut(s) 194
CseI GACGC 3 cut(s) 168, 425, 438
CspI CGGWCCG 1 cut(s) 194
CviAII CATG 1 cut(s) 55
DdeI CTNAG 1 cut(s) 178
DinI GGCGCC 1 cut(s) 457
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EaeI YGGCCR 2 cut(s) 72, 222
Eam1104I CTCTTC 2 cut(s) 154, 469
EarI CTCTTC 2 cut(s) 154, 469
EciI GGCGGA 2 cut(s) 71, 77
Eco47I GGWCC 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 224
EgeI GGCGCC 1 cut(s) 457
EheI GGCGCC 1 cut(s) 457
FaeI CATG 1 cut(s) 58
FaiI YATR 1 cut(s) 56
FaqI GGGAC 1 cut(s) 81
FatI CATG 1 cut(s) 54
FauI CCCGC 2 cut(s) 106, 175
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 5 cut(s) 41, 270, 301, 444, 447
FokI GGATG 2 cut(s) 350, 404
Fsp4HI GCNGC 5 cut(s) 41, 270, 301, 444, 447
FspBI CTAG 1 cut(s) 492
GlaI GCGC 4 cut(s) 62, 203, 387, 457
GluI GCNGC 5 cut(s) 41, 270, 301, 444, 447
GsuI CTGGAG 2 cut(s) 281, 374
HaeII RGCGCY 2 cut(s) 389, 459
HaeIII GGCC 4 cut(s) 74, 224, 269, 303
HapII CCGG 8 cut(s) 138, 144, 171, 197, 221, 242, 297, 459
HgaI GACGC 3 cut(s) 168, 425, 438
HhaI GCGC 4 cut(s) 63, 204, 388, 458
Hin1I GRCGYC 2 cut(s) 449, 456
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 4 cut(s) 61, 202, 386, 456
HinP1I GCGC 4 cut(s) 61, 202, 386, 456
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 5 cut(s) 119, 125, 217, 426, 431
HpaII CCGG 8 cut(s) 138, 144, 171, 197, 221, 242, 297, 459
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 187, 235, 471
Hpy188I TCNGA 2 cut(s) 124, 194
Hpy188III TCNNGA 4 cut(s) 55, 353, 376, 400
Hpy8I GTNNAC 3 cut(s) 187, 235, 471
Hpy99I CGWCG 5 cut(s) 116, 119, 162, 194, 254
HpyAV CCTTC 3 cut(s) 7, 248, 259
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 3 cut(s) 326, 438, 484
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 46, 67, 455
HpyF3I CTNAG 1 cut(s) 178
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 2 cut(s) 449, 456
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 4 cut(s) 61, 202, 386, 456
KasI GGCGCC 1 cut(s) 455
KroI GCCGGC 1 cut(s) 458
KroNI GCCGGC 1 cut(s) 460
Kzo9I GATC 1 cut(s) 24
LguI GCTCTTC 2 cut(s) 154, 469
LmnI GCTCC 2 cut(s) 146, 199
LweI GCATC 2 cut(s) 48, 478
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 409
MalI GATC 1 cut(s) 26
MbiI CCGCTC 1 cut(s) 101
MboI GATC 1 cut(s) 24
MboII GAAGA 5 cut(s) 22, 34, 141, 415, 456
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 1 cut(s) 380
MluNI TGGCCA 1 cut(s) 74
Mly113I GGCGCC 1 cut(s) 456
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 2 cut(s) 147, 172
Mox20I TGGCCA 1 cut(s) 74
MroNI GCCGGC 1 cut(s) 458
MscI TGGCCA 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 8 cut(s) 138, 144, 171, 197, 221, 242, 297, 459
MspR9I CCNGG 2 cut(s) 172, 226
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 4 cut(s) 37, 46, 67, 455
NaeI GCCGGC 1 cut(s) 460
NarI GGCGCC 1 cut(s) 456
NciI CCSGG 1 cut(s) 172
NdeII GATC 1 cut(s) 24
NgoMIV GCCGGC 1 cut(s) 458
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 2 cut(s) 142, 457
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 409
NspV TTCGAA 1 cut(s) 288
PagI TCATGA 1 cut(s) 54
PciSI GCTCTTC 2 cut(s) 154, 469
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 460
PfeI GAWTC 4 cut(s) 119, 217, 426, 431
PkrI GCNGC 5 cut(s) 42, 271, 302, 445, 448
PleI GAGTC 1 cut(s) 119
PluTI GGCGCC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 142, 457
PspPI GGNCC 1 cut(s) 194
Rsr2I CGGWCCG 1 cut(s) 194
RsrII CGGWCCG 1 cut(s) 194
SapI GCTCTTC 2 cut(s) 154, 469
SatI GCNGC 5 cut(s) 41, 270, 301, 444, 447
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 172, 226
SetI ASST 7 cut(s) 18, 72, 184, 192, 212, 230, 240
SfaNI GCATC 2 cut(s) 48, 478
SfoI GGCGCC 1 cut(s) 457
SfuI TTCGAA 1 cut(s) 288
SgrAI CRCCGGYG 1 cut(s) 296
SinI GGWCC 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 1 cut(s) 380
SspDI GGCGCC 1 cut(s) 455
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 170, 224
TaiI ACGT 1 cut(s) 192
TaqI TCGA 2 cut(s) 288, 429
TasI AATT 1 cut(s) 380
TauI GCSGC 5 cut(s) 43, 272, 303, 446, 449
TfiI GAWTC 4 cut(s) 119, 217, 426, 431
TseFI GTSAC 1 cut(s) 409
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.