Rh7CG381400

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0017313
Physical Location & Seq
Forward (+)
48086267 .. 48088830
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG381400.1

Sequence Viewer

Length: 507 bp
ATGGCGATGAAGAAGGTGGAGAAGATCAGGCAGATAGTGCGGCTGAAGCAAATCATGATGCGCTGGAAGCTGGCCAGCCTCCGCCTCCGCCTCCGTCCCGCTCTCTCCTACGACGACGATTCCGACTCCTCCTCCTCCTCCGGCTCTTCCACCCGCCGCACTCCCGCCGGGTTCTTAGCTGTCTACGTCGGACCGGAGCGCAGGCGGTTTGTGATTCCGGCCAGGTTCGTCAACCTTCCGGTTTTCGTCGGCTTGCTGGACAAGGCCGCGGAGGAGTTCGGCTTCGAAACCACCGGCGGCCTCGTCCTGCCTTGCGAAGTTGCATTTTTCAAGGATATCCTCAAGTTTCTCGAGAAAGACGAGAGGAAGTTCGGGAAATTGGCGCTGGATGAGTTCTTGAAGATGGTGACTGACGCGGTGGGATTCGATTCTTGCAAGGCGGCGGCGGCGGCTTCGTCTGGCGCCGGCTCTTCGTTCACTCCTCTATTGCAGGATGCTAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

168

Amino Acids

18.59

Weight (kDa)

9.61

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 117 1e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017313)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g29950
malus_domestica MD16G1240600.v1.1
prunus_persica Prupe.1G000200_v2.0.a1 Prupe.1G067400_v2.0.a1
pyrus_communis pycom13g20840
rosa_chinensis RchiOBHm_Chr7g0223781
rosa_laevigata RLG00000001947
rosa_multiflora Rmu_sc0010556.1_g000005
rosa_roxburghii Rroxscaffold_3G00235350
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363000 Rh7CG381400
rosa_wichuraiana Rw7G030810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 461
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 183
AccII CGCG 2 cut(s) 269, 416
AcoI YGGCCR 2 cut(s) 72, 219
AcuI CTGAAG 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 462
AgsI TTSAA 2 cut(s) 331, 400
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 2 cut(s) 70, 179
AluI AGCT 2 cut(s) 70, 179
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 4 cut(s) 72, 219, 264, 298
AspLEI GCGC 4 cut(s) 63, 201, 385, 464
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 418
AsuII TTCGAA 1 cut(s) 285
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 1 cut(s) 191
BalI TGGCCA 1 cut(s) 74
BanI GGYRCC 1 cut(s) 461
BccI CCATC 1 cut(s) 397
BciT130I CCWGG 1 cut(s) 223
BcnI CCSGG 1 cut(s) 169
BfaI CTAG 1 cut(s) 498
BfoI RGCGCY 2 cut(s) 386, 465
BisI GCNGC 8 cut(s) 41, 157, 267, 298, 441, 444, 447, 450
BlsI GCNGC 8 cut(s) 42, 158, 268, 299, 442, 445, 448, 451
Bme1390I CCNGG 2 cut(s) 169, 223
Bme18I GGWCC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 463
BmrFI CCNGG 2 cut(s) 169, 223
BmsI GCATC 2 cut(s) 48, 484
Bpu14I TTCGAA 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 2 cut(s) 193, 238
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse118I RCCGGY 2 cut(s) 293, 464
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 394, 499
BseRI GAGGAG 6 cut(s) 118, 121, 124, 127, 287, 471
Bsh1236I CGCG 2 cut(s) 269, 416
BshFI GGCC 4 cut(s) 74, 221, 266, 300
BshNI GGYRCC 1 cut(s) 461
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 7 cut(s) 141, 168, 194, 218, 239, 294, 465
BslFI GGGAC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 4 cut(s) 74, 221, 266, 300
BsoBI CYCGRG 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 285
Bsp143I GATC 1 cut(s) 24
BspANI GGCC 4 cut(s) 74, 221, 266, 300
BspFNI CGCG 2 cut(s) 269, 416
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 463
BspQI GCTCTTC 2 cut(s) 151, 475
BspT104I TTCGAA 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 461
BsrBI CCGCTC 1 cut(s) 101
BsrFI RCCGGY 2 cut(s) 293, 464
BssAI RCCGGY 2 cut(s) 293, 464
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 223
Bst6I CTCTTC 2 cut(s) 151, 475
BstACI GRCGYC 1 cut(s) 462
BstAPI GCANNNNNTGC 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 285
BstC8I GCNNGC 5 cut(s) 72, 76, 203, 254, 466
BstDEI CTNAG 1 cut(s) 175
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 2 cut(s) 394, 499
BstFNI CGCG 2 cut(s) 269, 416
BstH2I RGCGCY 2 cut(s) 386, 465
BstHHI GCGC 4 cut(s) 63, 201, 385, 464
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 5 cut(s) 37, 46, 67, 446, 449
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 167, 221
BstUI CGCG 2 cut(s) 269, 416
BsuRI GGCC 4 cut(s) 74, 221, 266, 300
BtgI CCRYGG 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 394, 499
Cac8I GCNNGC 5 cut(s) 72, 76, 203, 254, 466
CciI TCATGA 1 cut(s) 54
CfoI GCGC 4 cut(s) 63, 201, 385, 464
Cfr10I RCCGGY 2 cut(s) 293, 464
Cfr13I GGNCC 1 cut(s) 191
Cfr42I CCGCGG 1 cut(s) 270
CpoI CGGWCCG 1 cut(s) 191
CseI GACGC 1 cut(s) 422
CspI CGGWCCG 1 cut(s) 191
CviAII CATG 1 cut(s) 55
DdeI CTNAG 1 cut(s) 175
DinI GGCGCC 1 cut(s) 463
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EaeI YGGCCR 2 cut(s) 72, 219
Eam1104I CTCTTC 2 cut(s) 151, 475
EarI CTCTTC 2 cut(s) 151, 475
EciI GGCGGA 2 cut(s) 71, 77
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 221
EcoRV GATATC 1 cut(s) 337
EgeI GGCGCC 1 cut(s) 463
EheI GGCGCC 1 cut(s) 463
FaeI CATG 1 cut(s) 58
FaiI YATR 1 cut(s) 56
FaqI GGGAC 1 cut(s) 81
FatI CATG 1 cut(s) 54
FauI CCCGC 3 cut(s) 106, 161, 172
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 8 cut(s) 41, 157, 267, 298, 441, 444, 447, 450
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 8 cut(s) 41, 157, 267, 298, 441, 444, 447, 450
FspBI CTAG 1 cut(s) 498
GlaI GCGC 4 cut(s) 62, 200, 384, 463
GluI GCNGC 8 cut(s) 41, 157, 267, 298, 441, 444, 447, 450
HaeII RGCGCY 2 cut(s) 386, 465
HaeIII GGCC 4 cut(s) 74, 221, 266, 300
HapII CCGG 7 cut(s) 141, 168, 194, 218, 239, 294, 465
HgaI GACGC 1 cut(s) 422
HhaI GCGC 4 cut(s) 63, 201, 385, 464
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 4 cut(s) 61, 199, 383, 462
HinP1I GCGC 4 cut(s) 61, 199, 383, 462
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 5 cut(s) 119, 125, 214, 423, 428
HpaII CCGG 7 cut(s) 141, 168, 194, 218, 239, 294, 465
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 3 cut(s) 184, 232, 477
Hpy188I TCNGA 2 cut(s) 124, 191
Hpy188III TCNNGA 5 cut(s) 55, 350, 352, 373, 397
Hpy8I GTNNAC 3 cut(s) 184, 232, 477
Hpy99I CGWCG 4 cut(s) 116, 119, 191, 251
HpyAV CCTTC 2 cut(s) 7, 245
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 323, 435, 490
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 46, 67, 446, 449
HpyF3I CTNAG 1 cut(s) 175
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 4 cut(s) 61, 199, 383, 462
KasI GGCGCC 1 cut(s) 461
KroI GCCGGC 1 cut(s) 464
KroNI GCCGGC 1 cut(s) 466
KspI CCGCGG 1 cut(s) 270
Kzo9I GATC 1 cut(s) 24
LguI GCTCTTC 2 cut(s) 151, 475
LmnI GCTCC 1 cut(s) 196
LweI GCATC 2 cut(s) 48, 484
MaeI CTAG 1 cut(s) 498
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 406
MalI GATC 1 cut(s) 26
MbiI CCGCTC 1 cut(s) 101
MboI GATC 1 cut(s) 24
MboII GAAGA 5 cut(s) 22, 34, 138, 412, 462
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 1 cut(s) 377
MluNI TGGCCA 1 cut(s) 74
Mly113I GGCGCC 1 cut(s) 462
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 2 cut(s) 147, 169
Mox20I TGGCCA 1 cut(s) 74
MroNI GCCGGC 1 cut(s) 464
MscI TGGCCA 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 7 cut(s) 141, 168, 194, 218, 239, 294, 465
MspR9I CCNGG 2 cut(s) 169, 223
MvaI CCWGG 1 cut(s) 223
MvnI CGCG 2 cut(s) 269, 416
MwoI GCNNNNNNNGC 5 cut(s) 37, 46, 67, 446, 449
NaeI GCCGGC 1 cut(s) 466
NarI GGCGCC 1 cut(s) 462
NciI CCSGG 1 cut(s) 169
NdeII GATC 1 cut(s) 24
NgoMIV GCCGGC 1 cut(s) 464
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 463
NmuCI GTSAC 1 cut(s) 406
NspV TTCGAA 1 cut(s) 285
PaeR7I CTCGAG 1 cut(s) 350
PagI TCATGA 1 cut(s) 54
PciSI GCTCTTC 2 cut(s) 151, 475
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 357
PdiI GCCGGC 1 cut(s) 466
PfeI GAWTC 4 cut(s) 119, 214, 423, 428
PkrI GCNGC 8 cut(s) 42, 158, 268, 299, 442, 445, 448, 451
PleI GAGTC 1 cut(s) 119
PluTI GGCGCC 1 cut(s) 465
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 463
PspPI GGNCC 1 cut(s) 191
Rsr2I CGGWCCG 1 cut(s) 191
RsrII CGGWCCG 1 cut(s) 191
SacII CCGCGG 1 cut(s) 270
SapI GCTCTTC 2 cut(s) 151, 475
SatI GCNGC 8 cut(s) 41, 157, 267, 298, 441, 444, 447, 450
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 169, 223
SetI ASST 6 cut(s) 18, 72, 181, 189, 227, 237
SfaNI GCATC 2 cut(s) 48, 484
SfoI GGCGCC 1 cut(s) 463
Sfr274I CTCGAG 1 cut(s) 350
Sfr303I CCGCGG 1 cut(s) 270
SfuI TTCGAA 1 cut(s) 285
SgrAI CRCCGGYG 1 cut(s) 293
SgrBI CCGCGG 1 cut(s) 270
SinI GGWCC 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 350
SmlI CTYRAG 2 cut(s) 341, 350
SmoI CTYRAG 2 cut(s) 341, 350
Sse9I AATT 1 cut(s) 377
SspDI GGCGCC 1 cut(s) 461
SspMI CTAG 1 cut(s) 498
StyD4I CCNGG 2 cut(s) 167, 221
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 285, 351, 426
TasI AATT 1 cut(s) 377
TauI GCSGC 8 cut(s) 43, 159, 269, 300, 443, 446, 449, 452
TfiI GAWTC 4 cut(s) 119, 214, 423, 428
TseFI GTSAC 1 cut(s) 406
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.