RchiOBHm_Chr7g0223781

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0017313
Physical Location & Seq
Forward (+)
45663890 .. 45664807
918 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20037

Sequence Viewer

Length: 498 bp
ATGGCGATGAAGAAGGTGGAGAAGATCAGGCAGATAGTGCGGCTGAAGCAAATCATGATGCGGTGGAAGCTGGCCAGCCTCCGCCTCCGCCTCCGCCCCGCTCTCTCTTACGACGACGATTCCGACTCCTCCTCCGGCTCTTCCACCCGCCGCACTCCCTCGGGGTTCTTAGCGGTCTACGTCGGACCGGAGCGCAGGAGGTTTGTGATTCCGGCCAGGTTCGTCAACCTTCCGGTTTTCGTCGGCTTGCTGGAGAAGGCCGCCGAGGAGTTCGGCTTCGAAACCACCGGCGGCCTCTTCCTGCCTTGCGAAGTTGCGTTTTTCAAGGATATCCTCAAGTTTCTGGAGAAAGACGAGAGGAAGTTCGGGAAATTGGCGCTGGATGAGTTCTTGAAGATGGTGACTGACGCGGTGGGATTCGATTCTTGCAAGGCGGCGGCGGCTTCGTCTGGCGCCGGCTCTTCGTTCACTCCTCTATTGCAGGATGCTAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

165

Amino Acids

18.42

Weight (kDa)

9.61

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 115 1.8e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017313)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g29950
malus_domestica MD16G1240600.v1.1
prunus_persica Prupe.1G000200_v2.0.a1 Prupe.1G067400_v2.0.a1
pyrus_communis pycom13g20840
rosa_chinensis RchiOBHm_Chr7g0223781
rosa_laevigata RLG00000001947
rosa_multiflora Rmu_sc0010556.1_g000005
rosa_roxburghii Rroxscaffold_3G00235350
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363000 Rh7CG381400
rosa_wichuraiana Rw7G030810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 452
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 410
AcoI YGGCCR 2 cut(s) 72, 213
AcuI CTGAAG 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 453
AgsI TTSAA 2 cut(s) 325, 394
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 160
AoxI GGCC 4 cut(s) 72, 213, 258, 292
AspLEI GCGC 3 cut(s) 195, 379, 455
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 412
AsuII TTCGAA 1 cut(s) 279
AvaI CYCGRG 1 cut(s) 160
AvaII GGWCC 1 cut(s) 185
BalI TGGCCA 1 cut(s) 74
BanI GGYRCC 1 cut(s) 452
BccI CCATC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 217
BfaI CTAG 1 cut(s) 489
BfoI RGCGCY 2 cut(s) 380, 456
BisI GCNGC 7 cut(s) 41, 151, 261, 292, 435, 438, 441
BlsI GCNGC 7 cut(s) 42, 152, 262, 293, 436, 439, 442
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 2 cut(s) 48, 475
BpmI CTGGAG 2 cut(s) 272, 365
Bpu14I TTCGAA 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 453
BsaJI CCNNGG 2 cut(s) 159, 264
BsaWI WCCGGW 2 cut(s) 187, 232
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse118I RCCGGY 2 cut(s) 287, 455
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 2 cut(s) 159, 264
BseGI GGATG 2 cut(s) 388, 490
BseRI GAGGAG 4 cut(s) 118, 121, 281, 462
Bsh1236I CGCG 1 cut(s) 410
BshFI GGCC 4 cut(s) 74, 215, 260, 294
BshNI GGYRCC 1 cut(s) 452
BsiHKCI CYCGRG 1 cut(s) 160
BsiSI CCGG 6 cut(s) 135, 188, 212, 233, 288, 456
BsnI GGCC 4 cut(s) 74, 215, 260, 294
BsoBI CYCGRG 1 cut(s) 160
Bsp119I TTCGAA 1 cut(s) 279
Bsp143I GATC 1 cut(s) 24
BspANI GGCC 4 cut(s) 74, 215, 260, 294
BspFNI CGCG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 454
BspQI GCTCTTC 2 cut(s) 145, 466
BspT104I TTCGAA 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 452
BsrBI CCGCTC 1 cut(s) 101
BsrFI RCCGGY 2 cut(s) 287, 455
BssAI RCCGGY 2 cut(s) 287, 455
BssECI CCNNGG 2 cut(s) 159, 264
BssMI GATC 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 217
Bst6I CTCTTC 3 cut(s) 145, 302, 466
BstACI GRCGYC 1 cut(s) 453
BstAPI GCANNNNNTGC 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 4 cut(s) 72, 76, 248, 457
BstDEI CTNAG 1 cut(s) 169
BstF5I GGATG 2 cut(s) 388, 490
BstFNI CGCG 1 cut(s) 410
BstH2I RGCGCY 2 cut(s) 380, 456
BstHHI GCGC 3 cut(s) 195, 379, 455
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 4 cut(s) 37, 46, 67, 440
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 215
BstUI CGCG 1 cut(s) 410
BsuRI GGCC 4 cut(s) 74, 215, 260, 294
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 388, 490
Cac8I GCNNGC 4 cut(s) 72, 76, 248, 457
CciI TCATGA 1 cut(s) 54
CfoI GCGC 3 cut(s) 195, 379, 455
Cfr10I RCCGGY 2 cut(s) 287, 455
Cfr13I GGNCC 1 cut(s) 185
CpoI CGGWCCG 1 cut(s) 185
CseI GACGC 1 cut(s) 416
CspI CGGWCCG 1 cut(s) 185
CviAII CATG 1 cut(s) 55
DdeI CTNAG 1 cut(s) 169
DinI GGCGCC 1 cut(s) 454
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EaeI YGGCCR 2 cut(s) 72, 213
Eam1104I CTCTTC 3 cut(s) 145, 302, 466
EarI CTCTTC 3 cut(s) 145, 302, 466
EciI GGCGGA 3 cut(s) 71, 77, 83
Eco32I GATATC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 65
Eco88I CYCGRG 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 215
EcoRV GATATC 1 cut(s) 331
EgeI GGCGCC 1 cut(s) 454
EheI GGCGCC 1 cut(s) 454
FaeI CATG 1 cut(s) 58
FaiI YATR 1 cut(s) 56
FatI CATG 1 cut(s) 54
FauI CCCGC 2 cut(s) 106, 155
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 7 cut(s) 41, 151, 261, 292, 435, 438, 441
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 7 cut(s) 41, 151, 261, 292, 435, 438, 441
FspBI CTAG 1 cut(s) 489
GlaI GCGC 3 cut(s) 194, 378, 454
GluI GCNGC 7 cut(s) 41, 151, 261, 292, 435, 438, 441
GsuI CTGGAG 2 cut(s) 272, 365
HaeII RGCGCY 2 cut(s) 380, 456
HaeIII GGCC 4 cut(s) 74, 215, 260, 294
HapII CCGG 6 cut(s) 135, 188, 212, 233, 288, 456
HgaI GACGC 1 cut(s) 416
HhaI GCGC 3 cut(s) 195, 379, 455
Hin1I GRCGYC 1 cut(s) 453
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 3 cut(s) 193, 377, 453
HinP1I GCGC 3 cut(s) 193, 377, 453
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 5 cut(s) 119, 125, 208, 417, 422
HpaII CCGG 6 cut(s) 135, 188, 212, 233, 288, 456
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 3 cut(s) 178, 226, 468
Hpy188I TCNGA 2 cut(s) 124, 185
Hpy188III TCNNGA 4 cut(s) 55, 344, 367, 391
Hpy8I GTNNAC 3 cut(s) 178, 226, 468
Hpy99I CGWCG 4 cut(s) 116, 119, 185, 245
HpyAV CCTTC 3 cut(s) 7, 239, 250
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 429, 481
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 46, 67, 440
HpyF3I CTNAG 1 cut(s) 169
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 453
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 3 cut(s) 193, 377, 453
KasI GGCGCC 1 cut(s) 452
KroI GCCGGC 1 cut(s) 455
KroNI GCCGGC 1 cut(s) 457
Kzo9I GATC 1 cut(s) 24
LguI GCTCTTC 2 cut(s) 145, 466
LmnI GCTCC 1 cut(s) 190
LweI GCATC 2 cut(s) 48, 475
MaeI CTAG 1 cut(s) 489
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 400
MalI GATC 1 cut(s) 26
MbiI CCGCTC 1 cut(s) 101
MboI GATC 1 cut(s) 24
MboII GAAGA 6 cut(s) 22, 34, 132, 289, 406, 453
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 1 cut(s) 371
MluNI TGGCCA 1 cut(s) 74
Mly113I GGCGCC 1 cut(s) 453
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 2 cut(s) 147, 163
Mox20I TGGCCA 1 cut(s) 74
MroNI GCCGGC 1 cut(s) 455
MscI TGGCCA 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 6 cut(s) 135, 188, 212, 233, 288, 456
MspR9I CCNGG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 4 cut(s) 37, 46, 67, 440
NaeI GCCGGC 1 cut(s) 457
NarI GGCGCC 1 cut(s) 453
NdeII GATC 1 cut(s) 24
NgoMIV GCCGGC 1 cut(s) 455
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 454
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 400
NspV TTCGAA 1 cut(s) 279
PagI TCATGA 1 cut(s) 54
PciSI GCTCTTC 2 cut(s) 145, 466
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 457
PfeI GAWTC 4 cut(s) 119, 208, 417, 422
PkrI GCNGC 7 cut(s) 42, 152, 262, 293, 436, 439, 442
PleI GAGTC 1 cut(s) 119
PluTI GGCGCC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 454
PspPI GGNCC 1 cut(s) 185
Rsr2I CGGWCCG 1 cut(s) 185
RsrII CGGWCCG 1 cut(s) 185
SapI GCTCTTC 2 cut(s) 145, 466
SatI GCNGC 7 cut(s) 41, 151, 261, 292, 435, 438, 441
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 217
SetI ASST 6 cut(s) 18, 72, 183, 203, 221, 231
SfaNI GCATC 2 cut(s) 48, 475
SfoI GGCGCC 1 cut(s) 454
SfuI TTCGAA 1 cut(s) 279
SgrAI CRCCGGYG 1 cut(s) 287
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 1 cut(s) 371
SspDI GGCGCC 1 cut(s) 452
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 1 cut(s) 215
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 279, 420
TasI AATT 1 cut(s) 371
TauI GCSGC 7 cut(s) 43, 153, 263, 294, 437, 440, 443
TfiI GAWTC 4 cut(s) 119, 208, 417, 422
TseFI GTSAC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.