RLG00000001947

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017313
Physical Location & Seq
Reverse (-)
23328920 .. 23333425
4506 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001947

Sequence Viewer

Length: 651 bp
ATGGCGATGAAGAAGGTGGAGAAGATCAGGCAGATTGTGCGGCTGAAGCAAATCATGATGCGGTGGAAGCTGGCCAGCCTCCGCCTCCGCCTCCGCCCCGCTCTCTCCAACGACGACGATTCCGACTCCTCCTCCTCCTCCTCCGGCTCTTCCACCCGCCGCACTCCCTCGGGGTTCTTAGCGGTCTACGTCGGACCGGAGCGCAGGCGGTTTGTGATTCCGGCCAGGTTCGTCAATCTTCCGGTTTTCGTCGGCTTGCTGGAGAAGGCCGCCGAGGAGTTCGGCTTCGAAACCACCGGCGGCCTCGTCCTGCCTTGCGAAGTTGCATTTTTCAAGGACATCCTGAAGTTTCTTGAGAAAGACGAGAGGAAGTTCGGGAAATTGGCGCTGGATGAGTTCTTGAAGATGGTGACTGACGCGGTGGGATTCGATTCTTGCAAGGCGGCGGTGTCCGGCGCCGGCTCTTCGTTCACTCCTCTATTGCAGGATGCTAGGCTGAGAACTGGAGAATGGGATACAGGAGGCATGTACCAACTTGGCATGTTTCCTCACTCGGCTATTTGGTCACAAGGGAATGGGAAGGATGAGGTTTCGGAAGCTGACATTTTGTCAGGCACCATTGGTTTATGGAGAGCAGTGGAGATTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

217

Amino Acids

23.98

Weight (kDa)

8.86

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 118 8.3e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017313)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g29950
malus_domestica MD16G1240600.v1.1
prunus_persica Prupe.1G000200_v2.0.a1 Prupe.1G067400_v2.0.a1
pyrus_communis pycom13g20840
rosa_chinensis RchiOBHm_Chr7g0223781
rosa_laevigata RLG00000001947
rosa_multiflora Rmu_sc0010556.1_g000005
rosa_roxburghii Rroxscaffold_3G00235350
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363000 Rh7CG381400
rosa_wichuraiana Rw7G030810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 455, 614
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 419
AcoI YGGCCR 2 cut(s) 72, 222
AcuI CTGAAG 2 cut(s) 65, 365
AcyI GRCGYC 1 cut(s) 456
AfaI GTAC 1 cut(s) 530
AgsI TTSAA 2 cut(s) 334, 403
AhdI GACNNNNNGTC 1 cut(s) 607
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 2 cut(s) 70, 599
AluI AGCT 2 cut(s) 70, 599
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 4 cut(s) 72, 222, 267, 301
AspLEI GCGC 3 cut(s) 204, 388, 458
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 421
AsuII TTCGAA 1 cut(s) 288
AvaI CYCGRG 1 cut(s) 169
AvaII GGWCC 1 cut(s) 194
BalI TGGCCA 1 cut(s) 74
BanI GGYRCC 2 cut(s) 455, 614
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 226
BciVI GTATCC 1 cut(s) 508
BfaI CTAG 2 cut(s) 492, 649
BfoI RGCGCY 2 cut(s) 389, 459
BfuI GTATCC 1 cut(s) 508
BisI GCNGC 5 cut(s) 41, 160, 270, 301, 444
BlsI GCNGC 5 cut(s) 42, 161, 271, 302, 445
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 194
BmeRI GACNNNNNGTC 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 457, 616
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 2 cut(s) 48, 478
BpmI CTGGAG 2 cut(s) 281, 525
Bpu14I TTCGAA 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 168, 273
BsaWI WCCGGW 2 cut(s) 196, 241
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse118I RCCGGY 2 cut(s) 296, 458
Bse1I ACTGG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 2 cut(s) 168, 273
BseGI GGATG 4 cut(s) 339, 397, 493, 589
BseMII CTCAG 1 cut(s) 488
BseNI ACTGG 1 cut(s) 508
BseRI GAGGAG 7 cut(s) 118, 121, 124, 127, 130, 290, 465
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 4 cut(s) 74, 224, 269, 303
BshNI GGYRCC 2 cut(s) 455, 614
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 7 cut(s) 144, 197, 221, 242, 297, 453, 459
BsnI GGCC 4 cut(s) 74, 224, 269, 303
BsoBI CYCGRG 1 cut(s) 169
Bsp119I TTCGAA 1 cut(s) 288
Bsp143I GATC 1 cut(s) 24
BspANI GGCC 4 cut(s) 74, 224, 269, 303
BspCNI CTCAG 1 cut(s) 489
BspFNI CGCG 1 cut(s) 419
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 457, 616
BspQI GCTCTTC 2 cut(s) 154, 469
BspT104I TTCGAA 1 cut(s) 288
BspT107I GGYRCC 2 cut(s) 455, 614
BsrBI CCGCTC 1 cut(s) 101
BsrFI RCCGGY 2 cut(s) 296, 458
BsrI ACTGG 1 cut(s) 508
BssAI RCCGGY 2 cut(s) 296, 458
BssECI CCNNGG 2 cut(s) 168, 273
BssMI GATC 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 226
Bst6I CTCTTC 2 cut(s) 154, 469
BstACI GRCGYC 1 cut(s) 456
BstAPI GCANNNNNTGC 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 5 cut(s) 72, 76, 206, 257, 460
BstDEI CTNAG 2 cut(s) 178, 497
BstF5I GGATG 4 cut(s) 339, 397, 493, 589
BstFNI CGCG 1 cut(s) 419
BstH2I RGCGCY 2 cut(s) 389, 459
BstHHI GCGC 3 cut(s) 204, 388, 458
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 3 cut(s) 37, 46, 67
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 2 cut(s) 529, 544
BstSCI CCNGG 1 cut(s) 224
BstUI CGCG 1 cut(s) 419
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 4 cut(s) 74, 224, 269, 303
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 4 cut(s) 339, 397, 493, 589
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 1 cut(s) 642
Cac8I GCNNGC 5 cut(s) 72, 76, 206, 257, 460
CciI TCATGA 1 cut(s) 54
CfoI GCGC 3 cut(s) 204, 388, 458
Cfr10I RCCGGY 2 cut(s) 296, 458
Cfr13I GGNCC 1 cut(s) 194
CpoI CGGWCCG 1 cut(s) 194
CseI GACGC 1 cut(s) 425
Csp6I GTAC 1 cut(s) 529
CspI CGGWCCG 1 cut(s) 194
CviAII CATG 3 cut(s) 55, 526, 541
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 2 cut(s) 178, 497
DinI GGCGCC 1 cut(s) 457
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
DriI GACNNNNNGTC 1 cut(s) 607
EaeI YGGCCR 2 cut(s) 72, 222
Eam1104I CTCTTC 2 cut(s) 154, 469
Eam1105I GACNNNNNGTC 1 cut(s) 607
EarI CTCTTC 2 cut(s) 154, 469
EciI GGCGGA 3 cut(s) 71, 77, 83
Eco47I GGWCC 1 cut(s) 194
Eco57I CTGAAG 2 cut(s) 65, 365
Eco88I CYCGRG 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 224
EgeI GGCGCC 1 cut(s) 457
EheI GGCGCC 1 cut(s) 457
FaeI CATG 3 cut(s) 58, 529, 544
FaiI YATR 4 cut(s) 56, 527, 542, 628
FatI CATG 3 cut(s) 54, 525, 540
FauI CCCGC 2 cut(s) 106, 164
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 5 cut(s) 41, 160, 270, 301, 444
FokI GGATG 4 cut(s) 326, 404, 500, 596
Fsp4HI GCNGC 5 cut(s) 41, 160, 270, 301, 444
FspBI CTAG 2 cut(s) 492, 649
GlaI GCGC 3 cut(s) 203, 387, 457
GluI GCNGC 5 cut(s) 41, 160, 270, 301, 444
GsuI CTGGAG 2 cut(s) 281, 525
HaeII RGCGCY 2 cut(s) 389, 459
HaeIII GGCC 4 cut(s) 74, 224, 269, 303
HapII CCGG 7 cut(s) 144, 197, 221, 242, 297, 453, 459
HgaI GACGC 1 cut(s) 425
HhaI GCGC 3 cut(s) 204, 388, 458
Hin1I GRCGYC 1 cut(s) 456
Hin1II CATG 3 cut(s) 58, 529, 544
Hin6I GCGC 3 cut(s) 202, 386, 456
HinP1I GCGC 3 cut(s) 202, 386, 456
HinfI GANTC 5 cut(s) 119, 125, 217, 426, 431
HpaII CCGG 7 cut(s) 144, 197, 221, 242, 297, 453, 459
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 2 cut(s) 187, 471
Hpy188I TCNGA 3 cut(s) 124, 194, 595
Hpy188III TCNNGA 5 cut(s) 55, 343, 353, 376, 400
Hpy8I GTNNAC 2 cut(s) 187, 471
Hpy99I CGWCG 4 cut(s) 116, 119, 194, 254
HpyAV CCTTC 3 cut(s) 7, 259, 574
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 3 cut(s) 326, 438, 484
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 46, 67
HpyF3I CTNAG 2 cut(s) 178, 497
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 456
Hsp92II CATG 3 cut(s) 58, 529, 544
HspAI GCGC 3 cut(s) 202, 386, 456
KasI GGCGCC 1 cut(s) 455
KroI GCCGGC 1 cut(s) 458
KroNI GCCGGC 1 cut(s) 460
Kzo9I GATC 1 cut(s) 24
LguI GCTCTTC 2 cut(s) 154, 469
LmnI GCTCC 1 cut(s) 199
LweI GCATC 2 cut(s) 48, 478
MaeI CTAG 2 cut(s) 492, 649
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 409, 564
MalI GATC 1 cut(s) 26
MbiI CCGCTC 1 cut(s) 101
MboI GATC 1 cut(s) 24
MboII GAAGA 6 cut(s) 22, 34, 141, 230, 415, 456
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 1 cut(s) 380
MluNI TGGCCA 1 cut(s) 74
Mly113I GGCGCC 1 cut(s) 456
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 3 cut(s) 132, 147, 172
Mox20I TGGCCA 1 cut(s) 74
MroNI GCCGGC 1 cut(s) 458
MscI TGGCCA 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 7 cut(s) 144, 197, 221, 242, 297, 453, 459
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 3 cut(s) 37, 46, 67
NaeI GCCGGC 1 cut(s) 460
NarI GGCGCC 1 cut(s) 456
NdeII GATC 1 cut(s) 24
NgoMIV GCCGGC 1 cut(s) 458
NlaIII CATG 3 cut(s) 58, 529, 544
NlaIV GGNNCC 2 cut(s) 457, 616
NmeAIII GCCGAG 2 cut(s) 298, 533
NmuCI GTSAC 2 cut(s) 409, 564
NspI RCATGY 2 cut(s) 529, 544
NspV TTCGAA 1 cut(s) 288
PagI TCATGA 1 cut(s) 54
PciSI GCTCTTC 2 cut(s) 154, 469
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 460
PfeI GAWTC 4 cut(s) 119, 217, 426, 431
PkrI GCNGC 5 cut(s) 42, 161, 271, 302, 445
PleI GAGTC 1 cut(s) 119
PluTI GGCGCC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 457, 616
PspPI GGNCC 1 cut(s) 194
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
Rsr2I CGGWCCG 1 cut(s) 194
RsrII CGGWCCG 1 cut(s) 194
SapI GCTCTTC 2 cut(s) 154, 469
SatI GCNGC 5 cut(s) 41, 160, 270, 301, 444
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 226
SetI ASST 6 cut(s) 18, 72, 192, 230, 591, 601
SfaNI GCATC 2 cut(s) 48, 478
SfoI GGCGCC 1 cut(s) 457
SfuI TTCGAA 1 cut(s) 288
SgrAI CRCCGGYG 1 cut(s) 296
SinI GGWCC 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 1 cut(s) 380
SspDI GGCGCC 1 cut(s) 455
SspMI CTAG 2 cut(s) 492, 649
StyD4I CCNGG 1 cut(s) 224
TaiI ACGT 1 cut(s) 192
TaqI TCGA 2 cut(s) 288, 429
TasI AATT 1 cut(s) 380
TauI GCSGC 5 cut(s) 43, 162, 272, 303, 446
TfiI GAWTC 4 cut(s) 119, 217, 426, 431
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 2 cut(s) 409, 564
Tsp45I GTSAC 2 cut(s) 409, 564
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 1 cut(s) 642
VpaK11BI GGWCC 1 cut(s) 194
XceI RCATGY 2 cut(s) 529, 544
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 2 cut(s) 492, 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.