Prupe.1G067400_v2.0.a1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017313
Physical Location & Seq
Forward (+)
4810025 .. 4811236
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G067400.1

Sequence Viewer

Length: 501 bp
ATGGCGACCGCCATGAAAAAGGTCGAGAAGATCCGCCAGATAGTCCGGCTAAAACAACTCGTGATGCGCTGGAAGCTAACGAGTCTCCGCCGCCGCTCCGCCCTCTCCTACGACGACTCGGGCCCCTTCCCGTCCGGTTCGAACCGGCGCATCCCCGCCGGTTTTCTTGCTGTCTACGTCGGAGCGGAGCGAATCCGGTTCGTGATCCAGGCCCGGTTCGTGAACCTCCCGGTTTTCGTCGGATTACTAAAGAAGGCCGAGGAAGAGTTCGGGTTCGGGTGCAGCGGAGGCCTCGTGTTGCCTTGCGAGGTTGGGTTTTTCAAAGAGATCTTGAGATTTCTCGAGAGGGATGAGAGCAAGTTTGGACGGCTGGGATTGGAAGAGTTCTTGAAGATGGTTTCTGAAGTTGGTTTTGATTCTTGCAAGGAATTGGCGTCCAATGCTGCTGCTAATTCCTCTTGCCATGCCTTCACTCCTCTGTTGCAGAAAGCAAGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

167

Amino Acids

18.58

Weight (kDa)

9.8

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017313)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g29950
malus_domestica MD16G1240600.v1.1
prunus_persica Prupe.1G000200_v2.0.a1 Prupe.1G067400_v2.0.a1
pyrus_communis pycom13g20840
rosa_chinensis RchiOBHm_Chr7g0223781
rosa_laevigata RLG00000001947
rosa_multiflora Rmu_sc0010556.1_g000005
rosa_roxburghii Rroxscaffold_3G00235350
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363000 Rh7CG381400
rosa_wichuraiana Rw7G030810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 96, 185
AccI GTMKAC 1 cut(s) 174
AciI CCGC 9 cut(s) 9, 34, 88, 91, 94, 99, 156, 185, 285
AclWI GGATC 2 cut(s) 25, 199
AcuI CTGAAG 1 cut(s) 423
AcyI GRCGYC 1 cut(s) 434
AgsI TTSAA 2 cut(s) 322, 391
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 2 cut(s) 25, 199
Ama87I CYCGRG 2 cut(s) 118, 341
AoxI GGCC 4 cut(s) 121, 210, 255, 289
ApaI GGGCCC 1 cut(s) 125
ApeKI GCWGC 3 cut(s) 282, 443, 446
AspLEI GCGC 2 cut(s) 69, 150
AspS9I GGNCC 3 cut(s) 121, 122, 211
AsuC2I CCSGG 2 cut(s) 214, 230
AsuII TTCGAA 1 cut(s) 140
AvaI CYCGRG 2 cut(s) 118, 341
BaeGI GKGCMC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 125
BauI CACGAG 2 cut(s) 59, 293
BbvI GCAGC 3 cut(s) 294, 430, 433
BccI CCATC 1 cut(s) 388
BceAI ACGGC 1 cut(s) 383
BciT130I CCWGG 1 cut(s) 209
BcnI CCSGG 2 cut(s) 214, 230
BcoDI GTCTC 1 cut(s) 89
BglII AGATCT 1 cut(s) 327
BisI GCNGC 5 cut(s) 91, 94, 283, 444, 447
BlsI GCNGC 5 cut(s) 92, 95, 284, 445, 448
Bme1390I CCNGG 3 cut(s) 209, 214, 230
BmeT110I CYCGRG 2 cut(s) 118, 341
BmgT120I GGNCC 3 cut(s) 121, 122, 211
BmiI GGNNCC 2 cut(s) 123, 124
BmrFI CCNGG 3 cut(s) 209, 214, 230
BmsI GCATC 2 cut(s) 54, 159
Bpu14I TTCGAA 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 352
BpuMI CCSGG 2 cut(s) 214, 230
BsaHI GRCGYC 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 258
BsaWI WCCGGW 2 cut(s) 134, 195
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bse118I RCCGGY 2 cut(s) 144, 158
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 150, 355
BseRI GAGGAG 1 cut(s) 465
BseSI GKGCMC 1 cut(s) 125
BseXI GCAGC 3 cut(s) 294, 430, 433
BseYI CCCAGC 1 cut(s) 370
BsgI GTGCAG 1 cut(s) 301
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 4 cut(s) 123, 212, 257, 291
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 2 cut(s) 118, 341
BsiSI CCGG 7 cut(s) 46, 135, 145, 159, 196, 214, 230
BsmAI GTCTC 1 cut(s) 89
BsnI GGCC 4 cut(s) 123, 212, 257, 291
BsoBI CYCGRG 2 cut(s) 118, 341
Bsp119I TTCGAA 1 cut(s) 140
Bsp120I GGGCCC 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 3 cut(s) 30, 204, 327
BspACI CCGC 9 cut(s) 9, 34, 88, 91, 94, 99, 156, 185, 285
BspANI GGCC 4 cut(s) 123, 212, 257, 291
BspLI GGNNCC 2 cut(s) 123, 124
BspPI GGATC 2 cut(s) 25, 199
BspT104I TTCGAA 1 cut(s) 140
BsrBI CCGCTC 2 cut(s) 96, 185
BsrFI RCCGGY 2 cut(s) 144, 158
BssAI RCCGGY 2 cut(s) 144, 158
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 3 cut(s) 30, 204, 327
BssNI GRCGYC 1 cut(s) 434
BssSI CACGAG 2 cut(s) 59, 293
Bst2BI CACGAG 2 cut(s) 59, 293
Bst2UI CCWGG 1 cut(s) 209
Bst6I CTCTTC 2 cut(s) 258, 375
BstACI GRCGYC 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 140
BstF5I GGATG 2 cut(s) 150, 355
BstHHI GCGC 2 cut(s) 69, 150
BstKTI GATC 3 cut(s) 33, 207, 330
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 3 cut(s) 30, 204, 327
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 73, 288, 440
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 3 cut(s) 207, 212, 228
BstSLI GKGCMC 1 cut(s) 125
BstV1I GCAGC 3 cut(s) 294, 430, 433
BstX2I RGATCY 2 cut(s) 30, 327
BstYI RGATCY 2 cut(s) 30, 327
BsuRI GGCC 4 cut(s) 123, 212, 257, 291
BtsCI GGATG 2 cut(s) 150, 355
CfoI GCGC 2 cut(s) 69, 150
Cfr10I RCCGGY 2 cut(s) 144, 158
Cfr13I GGNCC 3 cut(s) 121, 122, 211
CseI GACGC 1 cut(s) 423
CviAII CATG 2 cut(s) 13, 464
CviJI RGCY 8 cut(s) 49, 76, 123, 212, 257, 291, 370, 498
CviKI_1 RGCY 8 cut(s) 49, 76, 123, 212, 257, 291, 370, 498
DpnI GATC 3 cut(s) 32, 206, 329
DpnII GATC 3 cut(s) 30, 204, 327
Eam1104I CTCTTC 2 cut(s) 258, 375
EarI CTCTTC 2 cut(s) 258, 375
EciI GGCGGA 3 cut(s) 23, 77, 88
Eco147I AGGCCT 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 423
Eco88I CYCGRG 2 cut(s) 118, 341
EcoO109I RGGNCCY 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 2 cut(s) 16, 467
FaiI YATR 2 cut(s) 14, 465
FatI CATG 2 cut(s) 12, 463
FauI CCCGC 1 cut(s) 163
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 5 cut(s) 91, 94, 283, 444, 447
FokI GGATG 2 cut(s) 137, 362
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 5 cut(s) 91, 94, 283, 444, 447
GlaI GCGC 2 cut(s) 68, 149
GluI GCNGC 5 cut(s) 91, 94, 283, 444, 447
GsaI CCCAGC 1 cut(s) 374
HaeIII GGCC 4 cut(s) 123, 212, 257, 291
HapII CCGG 7 cut(s) 46, 135, 145, 159, 196, 214, 230
HgaI GACGC 1 cut(s) 423
HhaI GCGC 2 cut(s) 69, 150
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 2 cut(s) 16, 467
Hin6I GCGC 2 cut(s) 67, 148
HinP1I GCGC 2 cut(s) 67, 148
HinfI GANTC 4 cut(s) 82, 116, 192, 416
HpaII CCGG 7 cut(s) 46, 135, 145, 159, 196, 214, 230
Hpy166II GTNNAC 2 cut(s) 175, 223
Hpy188I TCNGA 3 cut(s) 182, 242, 403
Hpy188III TCNNGA 8 cut(s) 25, 61, 202, 220, 331, 341, 343, 388
Hpy8I GTNNAC 2 cut(s) 175, 223
Hpy99I CGWCG 3 cut(s) 116, 182, 242
HpyAV CCTTC 3 cut(s) 136, 247, 478
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 3 cut(s) 282, 423, 484
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 288, 440
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 2 cut(s) 16, 467
HspAI GCGC 2 cut(s) 67, 148
Kzo9I GATC 3 cut(s) 30, 204, 327
LmnI GCTCC 3 cut(s) 101, 182, 187
Lsp1109I GCAGC 3 cut(s) 294, 430, 433
LweI GCATC 2 cut(s) 54, 159
MaeII ACGT 1 cut(s) 177
MalI GATC 3 cut(s) 32, 206, 329
MbiI CCGCTC 2 cut(s) 96, 185
MboI GATC 3 cut(s) 30, 204, 327
MboII GAAGA 4 cut(s) 40, 275, 392, 403
MflI RGATCY 2 cut(s) 30, 327
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 2 cut(s) 428, 451
MlyI GAGTC 2 cut(s) 91, 110
MmeI TCCRAC 2 cut(s) 160, 220
MnlI CCTC 9 cut(s) 113, 236, 253, 281, 301, 302, 339, 466, 486
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 7 cut(s) 46, 135, 145, 159, 196, 214, 230
MspR9I CCNGG 3 cut(s) 209, 214, 230
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 3 cut(s) 73, 288, 440
NciI CCSGG 2 cut(s) 214, 230
NdeII GATC 3 cut(s) 30, 204, 327
NlaIII CATG 2 cut(s) 16, 467
NlaIV GGNNCC 2 cut(s) 123, 124
NmeAIII GCCGAG 1 cut(s) 283
NspV TTCGAA 1 cut(s) 140
PaeR7I CTCGAG 1 cut(s) 341
PceI AGGCCT 1 cut(s) 291
PfeI GAWTC 2 cut(s) 192, 416
PkrI GCNGC 5 cut(s) 92, 95, 284, 445, 448
PleI GAGTC 2 cut(s) 90, 110
PpsI GAGTC 2 cut(s) 90, 110
Psp6I CCWGG 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 123, 124
PspOMI GGGCCC 1 cut(s) 121
PspPI GGNCC 3 cut(s) 121, 122, 211
PsuI RGATCY 2 cut(s) 30, 327
SatI GCNGC 5 cut(s) 91, 94, 283, 444, 447
Sau3AI GATC 3 cut(s) 30, 204, 327
Sau96I GGNCC 3 cut(s) 121, 122, 211
SchI GAGTC 2 cut(s) 91, 110
ScrFI CCNGG 3 cut(s) 209, 214, 230
SduI GDGCHC 1 cut(s) 125
SetI ASST 5 cut(s) 24, 78, 180, 228, 312
SfaNI GCATC 2 cut(s) 54, 159
Sfr274I CTCGAG 1 cut(s) 341
SfuI TTCGAA 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 331, 341
SmoI CTYRAG 2 cut(s) 331, 341
Sse9I AATT 2 cut(s) 428, 451
SseBI AGGCCT 1 cut(s) 291
SsiI CCGC 9 cut(s) 9, 34, 88, 91, 94, 99, 156, 185, 285
StuI AGGCCT 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 207, 212, 228
TaiI ACGT 1 cut(s) 180
TaqI TCGA 3 cut(s) 24, 140, 342
TasI AATT 2 cut(s) 428, 451
TauI GCSGC 2 cut(s) 93, 96
TfiI GAWTC 2 cut(s) 192, 416
TseI GCWGC 3 cut(s) 282, 443, 446
TspDTI ATGAA 1 cut(s) 29
XhoI CTCGAG 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.