MD16G1240600.v1.1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0017313
Physical Location & Seq
Forward (+)
26000543 .. 26001037
495 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1240600.v1.1.491

Sequence Viewer

Length: 495 bp
ATGGCGACTGCCATGAAGAAGGTCGAGAAGATCCGCCAAATAGTGCGCCTCAAGCAGCTTGTGATGCGCTGGAAACTCACGAGTCTCCGCCGCCGCTCCGTCCTCTCCAACAACGACTCCGACGGCTCAAACCGGCGCATTCCCTCCGGATTCTTGGCGGTCTACGTGGGGTCGGAGCGAATCCGATTCGTGATCCCGGCCCGGTTTGTGAACCTCCCAGTTTTCGTCGGATTGCTGAACAAGGCCGAGGAGGAGTTTGGATTCCAGTGCAACGGAGGCCTGGTCTTGCCCTGCGAAGTTGTCTTTTTCAAAGAGATCTTGATGCTTCTCGAGAGGGATGAGAGCAGGTTTGGACGGCTGGGATTGGAGGAGTTCTGGAAGGTGGTATCTGAGGTAGGTCTCGTCGATTCGTGCAAGGACTCGGCGACAAATGCTGCCGCGAAGAATTCGGGTTGCCATGCCTTCACTCCTCTGCTGCAGAGAGCGAGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

165

Amino Acids

18.42

Weight (kDa)

9.69

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 110 3e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017313)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g29950
malus_domestica MD16G1240600.v1.1
prunus_persica Prupe.1G000200_v2.0.a1 Prupe.1G067400_v2.0.a1
pyrus_communis pycom13g20840
rosa_chinensis RchiOBHm_Chr7g0223781
rosa_laevigata RLG00000001947
rosa_multiflora Rmu_sc0010556.1_g000005
rosa_roxburghii Rroxscaffold_3G00235350
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363000 Rh7CG381400
rosa_wichuraiana Rw7G030810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 336
AccBSI CCGCTC 1 cut(s) 96
AccI GTMKAC 1 cut(s) 162
AccII CGCG 1 cut(s) 440
AccIII TCCGGA 1 cut(s) 146
AciI CCGC 6 cut(s) 34, 88, 91, 94, 158, 438
AclWI GGATC 2 cut(s) 25, 187
AcsI RAATTY 1 cut(s) 445
AgsI TTSAA 1 cut(s) 310
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw26I GTCTC 2 cut(s) 89, 404
AlwI GGATC 2 cut(s) 25, 187
Ama87I CYCGRG 1 cut(s) 329
Aor13HI TCCGGA 1 cut(s) 146
AoxI GGCC 3 cut(s) 198, 243, 277
ApeKI GCWGC 3 cut(s) 55, 434, 475
ApoI RAATTY 1 cut(s) 445
AspLEI GCGC 3 cut(s) 48, 69, 138
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 2 cut(s) 197, 202
AvaI CYCGRG 1 cut(s) 329
BauI CACGAG 1 cut(s) 79
BbvI GCAGC 3 cut(s) 67, 421, 462
BceAI ACGGC 2 cut(s) 139, 371
BciT130I CCWGG 1 cut(s) 281
BcnI CCSGG 2 cut(s) 197, 202
BcoDI GTCTC 2 cut(s) 89, 404
BfmI CTRYAG 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 336
BglII AGATCT 1 cut(s) 315
BisI GCNGC 6 cut(s) 56, 91, 94, 435, 438, 476
BlsI GCNGC 6 cut(s) 57, 92, 95, 436, 439, 477
Bme1390I CCNGG 3 cut(s) 197, 202, 281
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 199
BmrFI CCNGG 3 cut(s) 197, 202, 281
BmrI ACTGGG 1 cut(s) 212
BmsI GCATC 2 cut(s) 54, 312
BmuI ACTGGG 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 2 cut(s) 197, 202
BsaAI YACGTR 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 246
BsaWI WCCGGW 1 cut(s) 146
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 267, 297
Bse118I RCCGGY 1 cut(s) 132
Bse1I ACTGG 2 cut(s) 218, 265
BseAI TCCGGA 1 cut(s) 146
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 2 cut(s) 218, 265
BseRI GAGGAG 4 cut(s) 263, 266, 383, 459
BseXI GCAGC 3 cut(s) 67, 421, 462
BseYI CCCAGC 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 440
BshFI GGCC 3 cut(s) 200, 245, 279
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 4 cut(s) 133, 147, 197, 202
BsmAI GTCTC 2 cut(s) 89, 404
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 3 cut(s) 200, 245, 279
Bso31I GGTCTC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 329
Bsp13I TCCGGA 1 cut(s) 146
Bsp143I GATC 3 cut(s) 30, 192, 315
BspACI CCGC 6 cut(s) 34, 88, 91, 94, 158, 438
BspANI GGCC 3 cut(s) 200, 245, 279
BspCNI CTCAG 1 cut(s) 382
BspEI TCCGGA 1 cut(s) 146
BspFNI CGCG 1 cut(s) 440
BspMAI CTGCAG 1 cut(s) 480
BspMI ACCTGC 1 cut(s) 336
BspPI GGATC 2 cut(s) 25, 187
BspTNI GGTCTC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 132
BsrI ACTGG 2 cut(s) 218, 265
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 3 cut(s) 30, 192, 315
BssSI CACGAG 1 cut(s) 79
Bst2BI CACGAG 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 343
BstFNI CGCG 1 cut(s) 440
BstHHI GCGC 3 cut(s) 48, 69, 138
BstKTI GATC 3 cut(s) 33, 195, 318
BstMAI GTCTC 2 cut(s) 89, 404
BstMBI GATC 3 cut(s) 30, 192, 315
BstMWI GCNNNNNNNGC 4 cut(s) 52, 64, 276, 431
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 3 cut(s) 195, 200, 279
BstSFI CTRYAG 1 cut(s) 476
BstUI CGCG 1 cut(s) 440
BstV1I GCAGC 3 cut(s) 67, 421, 462
BstX2I RGATCY 2 cut(s) 30, 315
BstYI RGATCY 2 cut(s) 30, 315
BsuRI GGCC 3 cut(s) 200, 245, 279
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 272
BveI ACCTGC 1 cut(s) 336
CfoI GCGC 3 cut(s) 48, 69, 138
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 199
CviAII CATG 2 cut(s) 13, 458
CviJI RGCY 7 cut(s) 58, 126, 200, 245, 279, 358, 492
CviKI_1 RGCY 7 cut(s) 58, 126, 200, 245, 279, 358, 492
DdeI CTNAG 1 cut(s) 390
DpnI GATC 3 cut(s) 32, 194, 317
DpnII GATC 3 cut(s) 30, 192, 315
EciI GGCGGA 2 cut(s) 23, 77
Eco147I AGGCCT 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 404
Eco88I CYCGRG 1 cut(s) 329
EcoRI GAATTC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 16, 461
FaiI YATR 2 cut(s) 14, 459
FatI CATG 2 cut(s) 12, 457
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 6 cut(s) 56, 91, 94, 435, 438, 476
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 6 cut(s) 56, 91, 94, 435, 438, 476
GlaI GCGC 3 cut(s) 47, 68, 137
GluI GCNGC 6 cut(s) 56, 91, 94, 435, 438, 476
GsaI CCCAGC 1 cut(s) 362
HaeIII GGCC 3 cut(s) 200, 245, 279
HapII CCGG 4 cut(s) 133, 147, 197, 202
HhaI GCGC 3 cut(s) 48, 69, 138
Hin1II CATG 2 cut(s) 16, 461
Hin6I GCGC 3 cut(s) 46, 67, 136
HinP1I GCGC 3 cut(s) 46, 67, 136
HinfI GANTC 8 cut(s) 82, 116, 150, 180, 186, 261, 407, 419
HpaII CCGG 4 cut(s) 133, 147, 197, 202
Hpy166II GTNNAC 2 cut(s) 163, 211
Hpy188I TCNGA 5 cut(s) 121, 175, 185, 230, 391
Hpy188III TCNNGA 8 cut(s) 25, 79, 147, 190, 319, 329, 331, 376
Hpy8I GTNNAC 2 cut(s) 163, 211
Hpy99I CGWCG 3 cut(s) 125, 230, 407
HpyAV CCTTC 3 cut(s) 13, 373, 472
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 270, 414, 478
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 64, 276, 431
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 16, 461
HspAI GCGC 3 cut(s) 46, 67, 136
Kpn2I TCCGGA 1 cut(s) 146
Kzo9I GATC 3 cut(s) 30, 192, 315
LmnI GCTCC 2 cut(s) 101, 175
Lsp1109I GCAGC 3 cut(s) 67, 421, 462
LweI GCATC 2 cut(s) 54, 312
MaeII ACGT 1 cut(s) 165
MalI GATC 3 cut(s) 32, 194, 317
MbiI CCGCTC 1 cut(s) 96
MboI GATC 3 cut(s) 30, 192, 315
MboII GAAGA 3 cut(s) 28, 40, 454
MflI RGATCY 2 cut(s) 30, 315
MluCI AATT 1 cut(s) 445
MlyI GAGTC 3 cut(s) 91, 110, 413
MmeI TCCRAC 4 cut(s) 132, 144, 153, 208
MroI TCCGGA 1 cut(s) 146
MspI CCGG 4 cut(s) 133, 147, 197, 202
MspR9I CCNGG 3 cut(s) 197, 202, 281
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 440
MwoI GCNNNNNNNGC 4 cut(s) 52, 64, 276, 431
NciI CCSGG 2 cut(s) 197, 202
NdeII GATC 3 cut(s) 30, 192, 315
NlaIII CATG 2 cut(s) 16, 461
NmeAIII GCCGAG 2 cut(s) 271, 401
PaeR7I CTCGAG 1 cut(s) 329
PceI AGGCCT 1 cut(s) 279
PctI GAATGC 1 cut(s) 138
PfeI GAWTC 5 cut(s) 150, 180, 186, 261, 407
PkrI GCNGC 6 cut(s) 57, 92, 95, 436, 439, 477
PleI GAGTC 3 cut(s) 90, 110, 413
PpsI GAGTC 3 cut(s) 90, 110, 413
Ppu21I YACGTR 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 1 cut(s) 279
PspPI GGNCC 1 cut(s) 199
PstI CTGCAG 1 cut(s) 480
PsuI RGATCY 2 cut(s) 30, 315
SatI GCNGC 6 cut(s) 56, 91, 94, 435, 438, 476
Sau3AI GATC 3 cut(s) 30, 192, 315
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 3 cut(s) 91, 110, 413
ScrFI CCNGG 3 cut(s) 197, 202, 281
SetI ASST 8 cut(s) 24, 60, 168, 216, 350, 384, 396, 400
SfaNI GCATC 2 cut(s) 54, 312
SfcI CTRYAG 1 cut(s) 476
Sfr274I CTCGAG 1 cut(s) 329
SlaI CTCGAG 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 50, 329
SmoI CTYRAG 2 cut(s) 50, 329
Sse9I AATT 1 cut(s) 445
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 6 cut(s) 34, 88, 91, 94, 158, 438
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 3 cut(s) 195, 200, 279
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 24, 330, 405
TasI AATT 1 cut(s) 445
TauI GCSGC 3 cut(s) 93, 96, 440
TfiI GAWTC 5 cut(s) 150, 180, 186, 261, 407
TscAI CASTG 1 cut(s) 272
TseI GCWGC 3 cut(s) 55, 434, 475
TspDTI ATGAA 1 cut(s) 29
TspGWI ACGGA 2 cut(s) 88, 288
TspRI CASTG 1 cut(s) 272
XapI RAATTY 1 cut(s) 445
XhoI CTCGAG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.