Prupe.1G000200_v2.0.a1

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017313
Physical Location & Seq
Reverse (-)
42266 .. 44493
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G000200.1

Sequence Viewer

Length: 423 bp
ATGAGGTTCAAGATCCTCACTGCCCACACACCCCCTTTAAAACAAAAGATTGTGGTGCCCCCTAATTTTTCAACAGCAAAAACATCTCTCTACTCTACAACAGACGAGCCCTCTCCCCTTGTCGTGATCCAGGCCTGGTTCGTGAACCTCCCGGTTTTCGTCAGATTACTAAAGAAGGCCGAGGAAGAGTTTGGGTTCGGGTGCAGCGGAGGCCTCGTGTTGCCTTGCGAGGTTGGGGTTTTCAAAGAGATCTTGAGATTTATTGAGAGGGATGAGAGCAAATTTGGACGGCTGGGATTGGAAGAGTTCTTGAAGATGGTTTCTGAAGTTGGTTTTGATTCTTGCAAGGAATTGGCGTCCAATGCTGCTGCTAATTCCTCTTGCCATGCCTTCACTCCTCTGCTGCAGAAAGCAAGGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

141

Amino Acids

15.51

Weight (kDa)

8.38

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017313)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g29950
malus_domestica MD16G1240600.v1.1
prunus_persica Prupe.1G000200_v2.0.a1 Prupe.1G067400_v2.0.a1
pyrus_communis pycom13g20840
rosa_chinensis RchiOBHm_Chr7g0223781
rosa_laevigata RLG00000001947
rosa_multiflora Rmu_sc0010556.1_g000005
rosa_roxburghii Rroxscaffold_3G00235350
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363000 Rh7CG381400
rosa_wichuraiana Rw7G030810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AciI CCGC 1 cut(s) 207
AclWI GGATC 2 cut(s) 7, 121
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 356
AgsI TTSAA 4 cut(s) 10, 72, 244, 313
AjnI CCWGG 2 cut(s) 129, 134
AlwI GGATC 2 cut(s) 7, 121
AoxI GGCC 4 cut(s) 132, 177, 211, 417
ApeKI GCWGC 4 cut(s) 204, 365, 368, 403
ApoI RAATTY 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 417
AsuC2I CCSGG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 60
BanI GGYRCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 111
BauI CACGAG 1 cut(s) 215
BbvI GCAGC 4 cut(s) 216, 352, 355, 390
BccI CCATC 1 cut(s) 310
BceAI ACGGC 1 cut(s) 305
BciT130I CCWGG 2 cut(s) 131, 136
BcnI CCSGG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 404
BglII AGATCT 1 cut(s) 249
BisI GCNGC 4 cut(s) 205, 366, 369, 404
BlsI GCNGC 4 cut(s) 206, 367, 370, 405
Bme1390I CCNGG 3 cut(s) 131, 136, 152
BmgT120I GGNCC 1 cut(s) 417
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 3 cut(s) 131, 136, 152
BpuEI CTTGAG 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
BseBI CCWGG 2 cut(s) 131, 136
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 387
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 4 cut(s) 216, 352, 355, 390
BseYI CCCAGC 1 cut(s) 292
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 4 cut(s) 134, 179, 213, 419
BshNI GGYRCC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 152
BsnI GGCC 4 cut(s) 134, 179, 213, 419
Bsp1286I GDGCHC 2 cut(s) 60, 111
Bsp143I GATC 3 cut(s) 12, 126, 249
BspACI CCGC 1 cut(s) 207
BspANI GGCC 4 cut(s) 134, 179, 213, 419
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 408
BspPI GGATC 2 cut(s) 7, 121
BspT107I GGYRCC 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 3 cut(s) 12, 126, 249
BssNI GRCGYC 1 cut(s) 356
BssSI CACGAG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 131, 136
Bst6I CTCTTC 2 cut(s) 180, 297
BstACI GRCGYC 1 cut(s) 356
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 3 cut(s) 15, 129, 252
BstMBI GATC 3 cut(s) 12, 126, 249
BstMWI GCNNNNNNNGC 2 cut(s) 210, 362
BstNI CCWGG 2 cut(s) 131, 136
BstSCI CCNGG 3 cut(s) 129, 134, 150
BstSFI CTRYAG 1 cut(s) 404
BstSLI GKGCMC 1 cut(s) 60
BstV1I GCAGC 4 cut(s) 216, 352, 355, 390
BstX2I RGATCY 2 cut(s) 12, 249
BstYI RGATCY 2 cut(s) 12, 249
BsuRI GGCC 4 cut(s) 134, 179, 213, 419
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 417
CseI GACGC 1 cut(s) 345
CviAII CATG 1 cut(s) 386
CviJI RGCY 6 cut(s) 109, 134, 179, 213, 292, 419
CviKI_1 RGCY 6 cut(s) 109, 134, 179, 213, 292, 419
DpnI GATC 3 cut(s) 14, 128, 251
DpnII GATC 3 cut(s) 12, 126, 249
DraI TTTAAA 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 180, 297
EarI CTCTTC 2 cut(s) 180, 297
Eco147I AGGCCT 2 cut(s) 134, 213
Eco24I GRGCYC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 417
EcoRII CCWGG 2 cut(s) 129, 134
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 1 cut(s) 389
FaiI YATR 1 cut(s) 387
FatI CATG 1 cut(s) 385
Fnu4HI GCNGC 4 cut(s) 205, 366, 369, 404
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 4 cut(s) 205, 366, 369, 404
GluI GCNGC 4 cut(s) 205, 366, 369, 404
GsaI CCCAGC 1 cut(s) 296
HaeIII GGCC 4 cut(s) 134, 179, 213, 419
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 345
Hin1I GRCGYC 1 cut(s) 356
Hin1II CATG 1 cut(s) 389
HinfI GANTC 1 cut(s) 338
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 164, 325
Hpy188III TCNNGA 5 cut(s) 10, 124, 142, 253, 310
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 169, 400
HpyCH4V TGCA 3 cut(s) 204, 345, 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 362
Hsp92I GRCGYC 1 cut(s) 356
Hsp92II CATG 1 cut(s) 389
Kzo9I GATC 3 cut(s) 12, 126, 249
LpnPI CCDG 6 cut(s) 116, 121, 143, 148, 165, 278
Lsp1109I GCAGC 4 cut(s) 216, 352, 355, 390
MalI GATC 3 cut(s) 14, 128, 251
MboI GATC 3 cut(s) 12, 126, 249
MboII GAAGA 3 cut(s) 197, 314, 325
MflI RGATCY 2 cut(s) 12, 249
MhlI GDGCHC 2 cut(s) 60, 111
MluCI AATT 4 cut(s) 64, 281, 350, 373
MseI TTAA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 3 cut(s) 131, 136, 152
MvaI CCWGG 2 cut(s) 131, 136
MwoI GCNNNNNNNGC 2 cut(s) 210, 362
NciI CCSGG 1 cut(s) 152
NdeII GATC 3 cut(s) 12, 126, 249
NlaIII CATG 1 cut(s) 389
NlaIV GGNNCC 1 cut(s) 57
NmeAIII GCCGAG 1 cut(s) 205
PceI AGGCCT 2 cut(s) 134, 213
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 4 cut(s) 206, 367, 370, 405
Psp6I CCWGG 2 cut(s) 129, 134
PspFI CCCAGC 1 cut(s) 292
PspGI CCWGG 2 cut(s) 129, 134
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 417
PstI CTGCAG 1 cut(s) 408
PsuI RGATCY 2 cut(s) 12, 249
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 4 cut(s) 205, 366, 369, 404
Sau3AI GATC 3 cut(s) 12, 126, 249
Sau96I GGNCC 1 cut(s) 417
ScrFI CCNGG 3 cut(s) 131, 136, 152
SduI GDGCHC 2 cut(s) 60, 111
SetI ASST 3 cut(s) 8, 150, 234
SfcI CTRYAG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 4 cut(s) 64, 281, 350, 373
SseBI AGGCCT 2 cut(s) 134, 213
SsiI CCGC 1 cut(s) 207
StuI AGGCCT 2 cut(s) 134, 213
StyD4I CCNGG 3 cut(s) 129, 134, 150
TasI AATT 4 cut(s) 64, 281, 350, 373
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 1 cut(s) 25
TseI GCWGC 4 cut(s) 204, 365, 368, 403
TspRI CASTG 1 cut(s) 25
XapI RAATTY 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.