Rroxscaffold_3G00235350

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017313
Physical Location & Seq
Reverse (-)
22265932 .. 22267034
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00235350.1

Sequence Viewer

Length: 510 bp
ATGGCGATGAAGAAGGTGGAGAAGATCAGGCAGATAGTGCGGCTGAAGCAAATCATGATGCGGTGGAAGCTGGCCAGCCTCCGCCTCCGCCTCCGCCCCGCTCTCTCCTACGACGACGATTCCTCCTCCTCCTCCTCCTCCTCCTCCGGCTCTTCCACCCGCCGCACTCCCTCGGGGTTCTTAGCGGTCTACGTCGGACCGGAGCGCAGGCGGTTTGTGATTCCGGCCAGGTTCGTCAACCTTCCGGTTTTCGTCGGCTTGCTGGAGAAGGCCGCCGAGGAGTTCGGCTTCGAAACCACCGGCGGCCTCGTCCTGCCTTGCGAAGTTGCATTTTTCAAGGATATCCTGAAGTTTCTCGAGAAAGACGAGAGGAAGTTCGGGAAATTGGCGCTGGATGAGTTCTTGAAGATGGTGACTGACGCGGTGGGATTCGATTCTTGCAAGGCGGCGGCGGCGGCGTCTGGCCCCGGCTCTTCGTTCACTCCTCTATTGCAGGATGCTAGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

169

Amino Acids

18.7

Weight (kDa)

9.73

Isoelectric Point (pI)

56.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 119 3e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017313)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g29950
malus_domestica MD16G1240600.v1.1
prunus_persica Prupe.1G000200_v2.0.a1 Prupe.1G067400_v2.0.a1
pyrus_communis pycom13g20840
rosa_chinensis RchiOBHm_Chr7g0223781
rosa_laevigata RLG00000001947
rosa_multiflora Rmu_sc0010556.1_g000005
rosa_roxburghii Rroxscaffold_3G00235350
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363000 Rh7CG381400
rosa_wichuraiana Rw7G030810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 422
AcoI YGGCCR 2 cut(s) 72, 225
AcuI CTGAAG 2 cut(s) 65, 368
AcyI GRCGYC 1 cut(s) 458
AgsI TTSAA 2 cut(s) 337, 406
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Ama87I CYCGRG 2 cut(s) 172, 356
AoxI GGCC 5 cut(s) 72, 225, 270, 304, 463
AspLEI GCGC 2 cut(s) 207, 391
AspS9I GGNCC 2 cut(s) 197, 464
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 424
AsuII TTCGAA 1 cut(s) 291
AvaI CYCGRG 2 cut(s) 172, 356
AvaII GGWCC 1 cut(s) 197
BalI TGGCCA 1 cut(s) 74
BccI CCATC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 229
BcnI CCSGG 1 cut(s) 468
BfaI CTAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 392
BisI GCNGC 8 cut(s) 41, 163, 273, 304, 447, 450, 453, 456
BlsI GCNGC 8 cut(s) 42, 164, 274, 305, 448, 451, 454, 457
Bme1390I CCNGG 2 cut(s) 229, 468
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 2 cut(s) 172, 356
BmgT120I GGNCC 2 cut(s) 197, 464
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 2 cut(s) 229, 468
BmsI GCATC 2 cut(s) 48, 487
BpmI CTGGAG 1 cut(s) 284
Bpu14I TTCGAA 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 458
BsaJI CCNNGG 3 cut(s) 171, 276, 466
BsaWI WCCGGW 2 cut(s) 199, 244
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bse118I RCCGGY 1 cut(s) 299
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 3 cut(s) 171, 276, 466
BseGI GGATG 2 cut(s) 400, 502
BseRI GAGGAG 9 cut(s) 115, 118, 121, 124, 127, 130, 133, 293, 474
Bsh1236I CGCG 1 cut(s) 422
BshFI GGCC 5 cut(s) 74, 227, 272, 306, 465
BsiHKCI CYCGRG 2 cut(s) 172, 356
BsiSI CCGG 6 cut(s) 147, 200, 224, 245, 300, 468
BsnI GGCC 5 cut(s) 74, 227, 272, 306, 465
BsoBI CYCGRG 2 cut(s) 172, 356
Bsp119I TTCGAA 1 cut(s) 291
Bsp143I GATC 1 cut(s) 24
BspANI GGCC 5 cut(s) 74, 227, 272, 306, 465
BspFNI CGCG 1 cut(s) 422
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 466
BspQI GCTCTTC 2 cut(s) 157, 478
BspT104I TTCGAA 1 cut(s) 291
BsrBI CCGCTC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 171, 276, 466
BssMI GATC 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 229
Bst6I CTCTTC 2 cut(s) 157, 478
BstACI GRCGYC 1 cut(s) 458
BstAPI GCANNNNNTGC 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 291
BstC8I GCNNGC 4 cut(s) 72, 76, 209, 260
BstDEI CTNAG 1 cut(s) 181
BstF5I GGATG 2 cut(s) 400, 502
BstFNI CGCG 1 cut(s) 422
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 2 cut(s) 207, 391
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 5 cut(s) 37, 46, 67, 452, 455
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 227, 466
BstUI CGCG 1 cut(s) 422
BsuRI GGCC 5 cut(s) 74, 227, 272, 306, 465
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 400, 502
Cac8I GCNNGC 4 cut(s) 72, 76, 209, 260
CciI TCATGA 1 cut(s) 54
CfoI GCGC 2 cut(s) 207, 391
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 197, 464
CpoI CGGWCCG 1 cut(s) 197
CseI GACGC 2 cut(s) 428, 447
CspI CGGWCCG 1 cut(s) 197
CviAII CATG 1 cut(s) 55
DdeI CTNAG 1 cut(s) 181
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EaeI YGGCCR 2 cut(s) 72, 225
Eam1104I CTCTTC 2 cut(s) 157, 478
EarI CTCTTC 2 cut(s) 157, 478
EciI GGCGGA 3 cut(s) 71, 77, 83
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 65, 368
Eco88I CYCGRG 2 cut(s) 172, 356
EcoRII CCWGG 1 cut(s) 227
EcoRV GATATC 1 cut(s) 343
FaeI CATG 1 cut(s) 58
FaiI YATR 1 cut(s) 56
FatI CATG 1 cut(s) 54
FauI CCCGC 2 cut(s) 106, 167
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 8 cut(s) 41, 163, 273, 304, 447, 450, 453, 456
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 8 cut(s) 41, 163, 273, 304, 447, 450, 453, 456
FspBI CTAG 1 cut(s) 501
GlaI GCGC 2 cut(s) 206, 390
GluI GCNGC 8 cut(s) 41, 163, 273, 304, 447, 450, 453, 456
GsuI CTGGAG 1 cut(s) 284
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 5 cut(s) 74, 227, 272, 306, 465
HapII CCGG 6 cut(s) 147, 200, 224, 245, 300, 468
HgaI GACGC 2 cut(s) 428, 447
HhaI GCGC 2 cut(s) 207, 391
Hin1I GRCGYC 1 cut(s) 458
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 2 cut(s) 205, 389
HinP1I GCGC 2 cut(s) 205, 389
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 5 cut(s) 119, 220, 429, 434, 504
HpaII CCGG 6 cut(s) 147, 200, 224, 245, 300, 468
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 3 cut(s) 190, 238, 480
Hpy188I TCNGA 2 cut(s) 197, 509
Hpy188III TCNNGA 6 cut(s) 55, 346, 356, 358, 379, 403
Hpy8I GTNNAC 3 cut(s) 190, 238, 480
Hpy99I CGWCG 4 cut(s) 116, 119, 197, 257
HpyAV CCTTC 3 cut(s) 7, 251, 262
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 329, 441, 493
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 46, 67, 452, 455
HpyF3I CTNAG 1 cut(s) 181
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 458
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 2 cut(s) 205, 389
Kzo9I GATC 1 cut(s) 24
LguI GCTCTTC 2 cut(s) 157, 478
LmnI GCTCC 1 cut(s) 202
LweI GCATC 2 cut(s) 48, 487
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 412
MalI GATC 1 cut(s) 26
MbiI CCGCTC 1 cut(s) 101
MboI GATC 1 cut(s) 24
MboII GAAGA 5 cut(s) 22, 34, 144, 418, 465
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 1 cut(s) 383
MluNI TGGCCA 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 175
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 6 cut(s) 147, 200, 224, 245, 300, 468
MspR9I CCNGG 2 cut(s) 229, 468
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 5 cut(s) 37, 46, 67, 452, 455
NciI CCSGG 1 cut(s) 468
NdeII GATC 1 cut(s) 24
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 466
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 412
NspV TTCGAA 1 cut(s) 291
PaeR7I CTCGAG 1 cut(s) 356
PagI TCATGA 1 cut(s) 54
PciSI GCTCTTC 2 cut(s) 157, 478
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PfeI GAWTC 4 cut(s) 119, 220, 429, 434
PkrI GCNGC 8 cut(s) 42, 164, 274, 305, 448, 451, 454, 457
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 2 cut(s) 197, 464
Rsr2I CGGWCCG 1 cut(s) 197
RsrII CGGWCCG 1 cut(s) 197
SapI GCTCTTC 2 cut(s) 157, 478
SatI GCNGC 8 cut(s) 41, 163, 273, 304, 447, 450, 453, 456
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 2 cut(s) 197, 464
ScrFI CCNGG 2 cut(s) 229, 468
SetI ASST 5 cut(s) 18, 72, 195, 233, 243
SfaNI GCATC 2 cut(s) 48, 487
Sfr274I CTCGAG 1 cut(s) 356
SfuI TTCGAA 1 cut(s) 291
SgrAI CRCCGGYG 1 cut(s) 299
SinI GGWCC 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 1 cut(s) 383
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 2 cut(s) 227, 466
TaiI ACGT 1 cut(s) 195
TaqI TCGA 3 cut(s) 291, 357, 432
TasI AATT 1 cut(s) 383
TauI GCSGC 8 cut(s) 43, 165, 275, 306, 449, 452, 455, 458
TfiI GAWTC 4 cut(s) 119, 220, 429, 434
TseFI GTSAC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.