pycom13g20840

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0017313
Physical Location & Seq
Forward (+)
16997566 .. 16998063
498 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g20840.1

Sequence Viewer

Length: 498 bp
ATGGCAACCGCCATGAAGAAGGTCGAGAAGATCCGCCAAATAGTGCGCCTCAAGCAGCTCGTGATGCGTTGGAAGTTCATGAGCCTCCGCCGCTCTGTCGTCTCCTACGACAACTCCAACGCCCTCCCTCCTCTCGGCTTAAACCGGCGCATTCCCTCCGGTTTCTTGGCGGTCTACGTTGGGCCGGGGAGAATCCGGTTTGTGATCCCTGCCCGATTCGTGAACCTCCCAGTCTTCGTCGGATTGCTGAAGAAGGCCGAGGAGGAGTTGGGATTCCAGAGCAATGGAGGGTTGGTCTTGCCTTGCGAGGTTGTGCTTTTCAAGGAGATGTTGTGGTTTTTGGAGAAAGATGAGAGCAGGTTTGGACGGTTGGGATTGGACGAGTTATTGAAGATGGTATCTGAAGTGGGTTTTGTTGATTCGTGCAAGGACTCGGCGAGGAATGCTGGTGCGAAGAATTCGGGTTGCCATGCCTTCACTCCTCTCCTGCAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

166

Amino Acids

18.6

Weight (kDa)

10.02

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 114 1.1e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017313)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g29950
malus_domestica MD16G1240600.v1.1
prunus_persica Prupe.1G000200_v2.0.a1 Prupe.1G067400_v2.0.a1
pyrus_communis pycom13g20840
rosa_chinensis RchiOBHm_Chr7g0223781
rosa_laevigata RLG00000001947
rosa_multiflora Rmu_sc0010556.1_g000005
rosa_roxburghii Rroxscaffold_3G00235350
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363000 Rh7CG381400
rosa_wichuraiana Rw7G030810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 348
AccBSI CCGCTC 1 cut(s) 93
AccI GTMKAC 1 cut(s) 174
AciI CCGC 5 cut(s) 9, 34, 88, 91, 170
AclWI GGATC 2 cut(s) 25, 199
AcsI RAATTY 1 cut(s) 457
AcuI CTGAAG 2 cut(s) 269, 423
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 2 cut(s) 322, 391
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 2 cut(s) 25, 199
AoxI GGCC 2 cut(s) 182, 255
ApeKI GCWGC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 457
AspLEI GCGC 2 cut(s) 48, 150
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 186
BauI CACGAG 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 226
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 388
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 106
BfmI CTRYAG 1 cut(s) 488
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 2 cut(s) 56, 91
BlsI GCNGC 2 cut(s) 57, 92
Bme1390I CCNGG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 54
BmuI ACTGGG 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 185, 258
BsaWI WCCGGW 2 cut(s) 158, 195
BsaXI ACNNNNNCTCC 6 cut(s) 98, 128, 279, 309, 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 185, 258
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMI GCAATG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 4 cut(s) 120, 275, 278, 471
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 2 cut(s) 184, 257
BsiSI CCGG 4 cut(s) 145, 159, 185, 196
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsmI GAATGC 2 cut(s) 150, 448
BsnI GGCC 2 cut(s) 184, 257
Bsp143I GATC 2 cut(s) 30, 204
BspACI CCGC 5 cut(s) 9, 34, 88, 91, 170
BspANI GGCC 2 cut(s) 184, 257
BspHI TCATGA 1 cut(s) 78
BspMAI CTGCAG 1 cut(s) 492
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 2 cut(s) 25, 199
BsrBI CCGCTC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 144
BsrI ACTGG 1 cut(s) 230
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 185, 258
BssMI GATC 2 cut(s) 30, 204
BssSI CACGAG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 369
BstHHI GCGC 2 cut(s) 48, 150
BstKTI GATC 2 cut(s) 33, 207
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 2 cut(s) 30, 204
BstMWI GCNNNNNNNGC 4 cut(s) 52, 64, 90, 443
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 488
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 284
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 2 cut(s) 184, 257
BveI ACCTGC 1 cut(s) 348
CciI TCATGA 1 cut(s) 78
CfoI GCGC 2 cut(s) 48, 150
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 182
CviAII CATG 3 cut(s) 13, 79, 470
CviJI RGCY 5 cut(s) 58, 84, 138, 184, 257
CviKI_1 RGCY 5 cut(s) 58, 84, 138, 184, 257
DpnI GATC 2 cut(s) 32, 206
DpnII GATC 2 cut(s) 30, 204
EciI GGCGGA 2 cut(s) 23, 77
Eco57I CTGAAG 2 cut(s) 269, 423
EcoRI GAATTC 1 cut(s) 457
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 3 cut(s) 16, 82, 473
FaiI YATR 3 cut(s) 14, 80, 471
FatI CATG 3 cut(s) 12, 78, 469
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 56, 91
Fsp4HI GCNGC 2 cut(s) 56, 91
GlaI GCGC 2 cut(s) 47, 149
GluI GCNGC 2 cut(s) 56, 91
HaeIII GGCC 2 cut(s) 184, 257
HapII CCGG 4 cut(s) 145, 159, 185, 196
HhaI GCGC 2 cut(s) 48, 150
Hin1II CATG 3 cut(s) 16, 82, 473
Hin6I GCGC 2 cut(s) 46, 148
HinP1I GCGC 2 cut(s) 46, 148
HinfI GANTC 5 cut(s) 192, 216, 273, 419, 431
HpaII CCGG 4 cut(s) 145, 159, 185, 196
Hpy166II GTNNAC 2 cut(s) 175, 223
Hpy188I TCNGA 2 cut(s) 242, 403
Hpy188III TCNNGA 5 cut(s) 25, 61, 79, 220, 277
Hpy8I GTNNAC 2 cut(s) 175, 223
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 13, 247, 484
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 2 cut(s) 426, 490
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 64, 90, 443
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 3 cut(s) 16, 82, 473
HspAI GCGC 2 cut(s) 46, 148
Kzo9I GATC 2 cut(s) 30, 204
LpnPI CCDG 9 cut(s) 158, 172, 198, 209, 222, 243, 290, 343, 432
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 54
MaeII ACGT 1 cut(s) 177
MalI GATC 2 cut(s) 32, 206
MbiI CCGCTC 1 cut(s) 93
MboI GATC 2 cut(s) 30, 204
MboII GAAGA 6 cut(s) 28, 40, 226, 262, 403, 466
MflI RGATCY 1 cut(s) 30
MluCI AATT 1 cut(s) 457
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 3 cut(s) 50, 141, 220
MseI TTAA 1 cut(s) 140
MspI CCGG 4 cut(s) 145, 159, 185, 196
MspR9I CCNGG 1 cut(s) 186
Mva1269I GAATGC 2 cut(s) 150, 448
MwoI GCNNNNNNNGC 4 cut(s) 52, 64, 90, 443
NciI CCSGG 1 cut(s) 186
NdeII GATC 2 cut(s) 30, 204
NlaIII CATG 3 cut(s) 16, 82, 473
NmeAIII GCCGAG 3 cut(s) 114, 283, 413
PagI TCATGA 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 2 cut(s) 150, 448
PfeI GAWTC 4 cut(s) 192, 216, 273, 419
PkrI GCNGC 2 cut(s) 57, 92
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PspPI GGNCC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 492
PsuI RGATCY 1 cut(s) 30
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 2 cut(s) 56, 91
Sau3AI GATC 2 cut(s) 30, 204
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 186
SetI ASST 6 cut(s) 24, 60, 180, 228, 312, 362
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 488
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 1 cut(s) 457
SsiI CCGC 5 cut(s) 9, 34, 88, 91, 170
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 369
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 457
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 4 cut(s) 192, 216, 273, 419
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 29, 67
XapI RAATTY 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.