Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007029

Physical Location & Seq

Genomic Coordinates Reverse (-)

21135782 .. 21141478

Gene Structure 5697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30230.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGTCATTCCGTAGCATAGTTCGTGATGTTAGGGATGGTATTGGAAGCCTATCTAGAAGGGGTTTTGAAGTTCGGCTGATGGGCCATCATAGAGGGAAATCTCATGGATCATTGAATGATCTGCATGACCAGCCTCTTGTCGTTCAGAACAGTCGTTGGGCTAGCCTTCCCCCAGAACTTTTGTATGATGTAATTAGGAGGCTGGAGGAGAGTGAGAGCACATGGCCTTCTCGAAAGCACGTTGTTGCATGTGCTTCAGTTTGCCGTTCTTGGAGAATCATGTGTAAAGAAATTGTTAGGAGTCCTGAGATATGCGGGAAACTTACTTTTCCAGTTTCACTAAAGCAGCCAGGTCCACGGGATAATCTCGTTCAGTGCTTCATCAAAAGGGATAAATCTAATCTAACATACCACCTGTATTTATGTCTTAGTCCTGCTTTGCTTGTTGAAAATGGGAAGTTCCTTCTTTCTGCAAAGAGAACTCGACGAACCACTTGTACAGAATATGTTATTTCCATGGATGCTGACAACATTTCAAGATCAAGCAACACTTACATTGGAAAGCTAAGATCAAACTTTCTTGGCACAAAATTCATTGTATATGATACACAGCCTGCATGCACTTCTGAGCATATTACGCCCCCCGGAAGGACGAGCCGTAGGTTTACTTCCAAAAAGGTCTCCCCAAAAGTCCCAACCGGCAGCTACAACATTGCCCAAATAACATATGAGCTAAATGTGTTGGGTACTCGTGGCCCGCGAAGGATGCATTGCATGATGCATTCTATCCCAGTCTCGTCTCTTGATGTGGGAGGTAGTGTCCCCGGCCAACCGGAACTCCTTCCCCGCTGCCTAGAAGATTCATTCCGAAGCATCTCTTTCTCTAAGTCTCTTGACCACTCAGTTGAGTTCAGTAGTGCACGGTTTTCTGAAATTGGTGGGCCTCAGGATGAAGGGGAGGATAGCAAGTCAAGACCATTAGTTCTGAAAAACAAGCCCCCACGATGGCACGAACAATTACAGTGTTGGTGCCTAAACTTCCGAGGCCGGGTAACTGTTGCTTCAGTTAAGAATTTTCAGTTGATTGCTGCCATTCAGCCTGCCCCAAGTGTTGGTACACCTACTCCATCTCAGCCAGCTCCACCTGATCTGGATAAGATAATATTGCAGTTTGGCAAAGTCGGTAAAGATATGTTCACCATGGATTATCGTTATCCTTTATCTGCATTTCAGGCCTTTGCAATCTGCCTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

428

Amino Acids

47.97

Weight (kDa)

9.47

Isoelectric Point (pI)

64.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	53 - 96	7.6e-06	F-box-like
Tub	PF01167	114 - 422	4.3e-108	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25280 AT1G25280 AT1G25280
fragaria_vesca	FvH4_5g30230 FvH4_5g30230 FvH4_5g30230 FvH4_5g30230
malus_domestica	MD08G1224600.v1.1 MD15G1417700.v1.1
prunus_persica	Prupe.1G561700_v2.0.a1 Prupe.1G561700_v2.0.a1 Prupe.1G561700_v2.0.a1
pyrus_communis	pycom08g19550 pycom15g37090
rosa_chinensis	RchiOBHm_Chr7g0224501
rosa_laevigata	RLG00000001890
rosa_multiflora	Rmu_sc0008421.1_g000006
rosa_roxburghii	Rroxscaffold_3G00234680
rosa_rugosa	Rorug07G0223800 Rorug07G0223800
rosa_samantha	Rh7AG379500 Rh7BG359900 Rh7CG398900 Rh7DG369400
rosa_wichuraiana	Rw7G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1029
AccB7I	CCANNNNNTGG	1 cut(s)	1112
AccII	CGCG	1 cut(s)	760
AciI	CCGC	3 cut(s)	315, 758, 847
AclWI	GGATC	1 cut(s)	115
AcoI	YGGCCR	1 cut(s)	826
AcsI	RAATTY	2 cut(s)	590, 1072
AcuI	CTGAAG	2 cut(s)	240, 1047
AfaI	GTAC	3 cut(s)	499, 748, 1117
AfiI	CCNNNNNNNGG	4 cut(s)	648, 1005, 1048, 1112
AgsI	TTSAA	4 cut(s)	68, 115, 449, 537
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	5 cut(s)	565, 705, 733, 1139, 1257
AluI	AGCT	5 cut(s)	565, 705, 733, 1139, 1257
Alw21I	GWGCWC	2 cut(s)	221, 922
Alw26I	GTCTC	4 cut(s)	685, 799, 804, 894
Alw44I	GTGCAC	1 cut(s)	918
AlwI	GGATC	1 cut(s)	115
AoxI	GGCC	7 cut(s)	82, 224, 754, 826, 941, 1045, 1233
ApaLI	GTGCAC	1 cut(s)	918
ApeKI	GCWGC	5 cut(s)	346, 702, 849, 1088, 1254
ApoI	RAATTY	2 cut(s)	590, 1072
Asp700I	GAANNNNTTC	1 cut(s)	840
AspS9I	GGNCC	4 cut(s)	82, 353, 755, 941
AsuC2I	CCSGG	3 cut(s)	645, 825, 1049
AsuHPI	GGTGA	1 cut(s)	1189
AsuNHI	GCTAGC	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	353
AxyI	CCTNAGG	1 cut(s)	945
BaeGI	GKGCMC	1 cut(s)	922
BanI	GGYRCC	1 cut(s)	1029
BarI	GAAGNNNNNNTAC	2 cut(s)	652, 684
BauI	CACGAG	1 cut(s)	750
Bbv12I	GWGCWC	2 cut(s)	221, 922
BbvI	GCAGC	5 cut(s)	358, 714, 836, 1075, 1266
BccI	CCATC	5 cut(s)	29, 73, 93, 999, 1135
BceAI	ACGGC	2 cut(s)	249, 642
BciT130I	CCWGG	1 cut(s)	351
BcnI	CCSGG	3 cut(s)	645, 825, 1049
BcoDI	GTCTC	4 cut(s)	685, 799, 804, 894
BfaI	CTAG	3 cut(s)	54, 162, 854
BisI	GCNGC	5 cut(s)	347, 703, 850, 1089, 1255
BlsI	GCNGC	5 cut(s)	348, 704, 851, 1090, 1256
Bme1390I	CCNGG	4 cut(s)	351, 645, 825, 1049
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	4 cut(s)	82, 353, 755, 941
BmiI	GGNNCC	1 cut(s)	1031
BmrFI	CCNGG	4 cut(s)	351, 645, 825, 1049
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	4 cut(s)	511, 756, 768, 882
BmtI	GCTAGC	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	785
BpmI	CTGGAG	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	1250
BpuMI	CCSGG	3 cut(s)	645, 825, 1049
BsaI	GGTCTC	1 cut(s)	685
BsaJI	CCNNGG	6 cut(s)	356, 516, 643, 823, 1042, 1200
BsaWI	WCCGGW	1 cut(s)	832
BsaXI	ACNNNNNCTCC	6 cut(s)	804, 822, 834, 852, 1108, 1138
Bsc4I	CCNNNNNNNGG	4 cut(s)	648, 1005, 1048, 1112
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	2 cut(s)	332, 791
Bse21I	CCTNAGG	1 cut(s)	945
Bse3DI	GCAATG	2 cut(s)	711, 769
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	6 cut(s)	356, 516, 643, 823, 1042, 1200
BseGI	GGATG	4 cut(s)	40, 526, 771, 955
BseLI	CCNNNNNNNGG	4 cut(s)	648, 1005, 1048, 1112
BseMI	GCAATG	2 cut(s)	711, 769
BseMII	CTCAG	6 cut(s)	297, 618, 915, 959, 1145, 1241
BseNI	ACTGG	2 cut(s)	332, 791
BseRI	GAGGAG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	922
BseXI	GCAGC	5 cut(s)	358, 714, 836, 1075, 1266
Bsh1236I	CGCG	1 cut(s)	760
BshFI	GGCC	7 cut(s)	84, 226, 756, 828, 943, 1047, 1235
BshNI	GGYRCC	1 cut(s)	1029
BsiHKAI	GWGCWC	2 cut(s)	221, 922
BsiSI	CCGG	5 cut(s)	645, 699, 825, 833, 1048
BslFI	GGGAC	2 cut(s)	677, 806
BslI	CCNNNNNNNGG	4 cut(s)	648, 1005, 1048, 1112
BsmAI	GTCTC	4 cut(s)	685, 799, 804, 894
BsmBI	CGTCTC	1 cut(s)	804
BsmFI	GGGAC	2 cut(s)	677, 806
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	7 cut(s)	84, 226, 756, 828, 943, 1047, 1235
Bso31I	GGTCTC	1 cut(s)	685
Bsp1286I	GDGCHC	2 cut(s)	221, 922
Bsp1407I	TGTACA	1 cut(s)	497
Bsp143I	GATC	5 cut(s)	107, 118, 539, 569, 1147
Bsp19I	CCATGG	2 cut(s)	516, 1200
BspACI	CCGC	3 cut(s)	315, 758, 847
BspANI	GGCC	7 cut(s)	84, 226, 756, 828, 943, 1047, 1235
BspCNI	CTCAG	6 cut(s)	298, 619, 914, 958, 1144, 1242
BspFNI	CGCG	1 cut(s)	760
BspLI	GGNNCC	1 cut(s)	1031
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	1029
BspTNI	GGTCTC	1 cut(s)	685
BsrDI	GCAATG	2 cut(s)	711, 769
BsrFI	RCCGGY	1 cut(s)	698
BsrGI	TGTACA	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	332, 791
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	6 cut(s)	356, 516, 643, 823, 1042, 1200
BssMI	GATC	5 cut(s)	107, 118, 539, 569, 1147
BssSI	CACGAG	1 cut(s)	750
BssT1I	CCWWGG	2 cut(s)	516, 1200
Bst2BI	CACGAG	1 cut(s)	750
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	4 cut(s)	152, 924, 1023, 1057
BstAUI	TGTACA	1 cut(s)	497
BstC8I	GCNNGC	6 cut(s)	163, 615, 619, 758, 1101, 1137
BstDEI	CTNAG	9 cut(s)	306, 428, 566, 627, 885, 901, 945, 1131, 1250
BstDSI	CCRYGG	3 cut(s)	356, 516, 1200
BstF5I	GGATG	4 cut(s)	40, 526, 771, 955
BstFNI	CGCG	1 cut(s)	760
BstKTI	GATC	5 cut(s)	110, 121, 542, 572, 1150
BstMAI	GTCTC	4 cut(s)	685, 799, 804, 894
BstMBI	GATC	5 cut(s)	107, 118, 539, 569, 1147
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 637, 766, 1232, 1254
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	2 cut(s)	252, 621
BstSCI	CCNGG	4 cut(s)	349, 643, 823, 1047
BstSLI	GKGCMC	1 cut(s)	922
BstUI	CGCG	1 cut(s)	760
BstV1I	GCAGC	5 cut(s)	358, 714, 836, 1075, 1266
Bsu36I	CCTNAGG	1 cut(s)	945
BsuRI	GGCC	7 cut(s)	84, 226, 756, 828, 943, 1047, 1235
BtgI	CCRYGG	3 cut(s)	356, 516, 1200
BtsCI	GGATG	4 cut(s)	40, 526, 771, 955
BtsIMutI	CAGTG	2 cut(s)	380, 1028
Cac8I	GCNNGC	6 cut(s)	163, 615, 619, 758, 1101, 1137
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	4 cut(s)	82, 353, 755, 941
Csp6I	GTAC	3 cut(s)	498, 747, 1116
CviAII	CATG	9 cut(s)	104, 125, 222, 249, 280, 517, 618, 775, 1201
CviQI	GTAC	3 cut(s)	498, 747, 1116
DdeI	CTNAG	9 cut(s)	306, 428, 566, 627, 885, 901, 945, 1131, 1250
DpnI	GATC	5 cut(s)	109, 120, 541, 571, 1149
DpnII	GATC	5 cut(s)	107, 118, 539, 569, 1147
EaeI	YGGCCR	1 cut(s)	826
Eco130I	CCWWGG	2 cut(s)	516, 1200
Eco147I	AGGCCT	1 cut(s)	1235
Eco31I	GGTCTC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	2 cut(s)	240, 1047
Eco81I	CCTNAGG	1 cut(s)	945
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	516, 1200
EcoT22I	ATGCAT	2 cut(s)	771, 783
ErhI	CCWWGG	2 cut(s)	516, 1200
Esp3I	CGTCTC	1 cut(s)	804
FaeI	CATG	9 cut(s)	107, 128, 225, 252, 283, 520, 621, 778, 1204
FalI	AAGNNNNNCTT	4 cut(s)	535, 567, 862, 894
FaqI	GGGAC	2 cut(s)	677, 806
FatI	CATG	9 cut(s)	103, 124, 221, 248, 279, 516, 617, 774, 1200
FauI	CCCGC	3 cut(s)	308, 765, 854
FauNDI	CATATG	1 cut(s)	727
Fnu4HI	GCNGC	5 cut(s)	347, 703, 850, 1089, 1255
FokI	GGATG	4 cut(s)	47, 533, 778, 962
Fsp4HI	GCNGC	5 cut(s)	347, 703, 850, 1089, 1255
FspBI	CTAG	3 cut(s)	54, 162, 854
GluI	GCNGC	5 cut(s)	347, 703, 850, 1089, 1255
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	7 cut(s)	84, 226, 756, 828, 943, 1047, 1235
HapII	CCGG	5 cut(s)	645, 699, 825, 833, 1048
Hin1II	CATG	9 cut(s)	107, 128, 225, 252, 283, 520, 621, 778, 1204
HinfI	GANTC	3 cut(s)	276, 301, 860
HpaII	CCGG	5 cut(s)	645, 699, 825, 833, 1048
HphI	GGTGA	1 cut(s)	1189
Hpy166II	GTNNAC	5 cut(s)	356, 666, 920, 1118, 1197
Hpy188I	TCNGA	6 cut(s)	147, 628, 869, 931, 987, 1043
Hpy8I	GTNNAC	5 cut(s)	356, 666, 920, 1118, 1197
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	8 cut(s)	51, 176, 237, 473, 642, 756, 851, 947
HpyCH4III	ACNGT	4 cut(s)	152, 924, 1023, 1057
HpyCH4IV	ACGT	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 637, 766, 1232, 1254
HpyF3I	CTNAG	9 cut(s)	306, 428, 566, 627, 885, 901, 945, 1131, 1250
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	9 cut(s)	107, 128, 225, 252, 283, 520, 621, 778, 1204
Kzo9I	GATC	5 cut(s)	107, 118, 539, 569, 1147
LmnI	GCTCC	1 cut(s)	1144
Lsp1109I	GCAGC	5 cut(s)	358, 714, 836, 1075, 1266
LweI	GCATC	4 cut(s)	511, 756, 768, 882
MaeI	CTAG	3 cut(s)	54, 162, 854
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	1051
MalI	GATC	5 cut(s)	109, 120, 541, 571, 1149
MboI	GATC	5 cut(s)	107, 118, 539, 569, 1147
MboII	GAAGA	1 cut(s)	869
MhlI	GDGCHC	2 cut(s)	221, 922
MluCI	AATT	7 cut(s)	192, 291, 590, 933, 1016, 1072, 1268
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	8 cut(s)	86, 144, 192, 199, 806, 952, 954, 1037
Mph1103I	ATGCAT	2 cut(s)	771, 783
MroXI	GAANNNNTTC	1 cut(s)	840
MseI	TTAA	1 cut(s)	1068
MspA1I	CMGCKG	1 cut(s)	849
MspI	CCGG	5 cut(s)	645, 699, 825, 833, 1048
MspR9I	CCNGG	4 cut(s)	351, 645, 825, 1049
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	760
MwoI	GCNNNNNNNGC	5 cut(s)	130, 637, 766, 1232, 1254
NciI	CCSGG	3 cut(s)	645, 825, 1049
NcoI	CCATGG	2 cut(s)	516, 1200
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	5 cut(s)	107, 118, 539, 569, 1147
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	9 cut(s)	107, 128, 225, 252, 283, 520, 621, 778, 1204
NlaIV	GGNNCC	1 cut(s)	1031
NsiI	ATGCAT	2 cut(s)	771, 783
NspI	RCATGY	2 cut(s)	252, 621
PaeI	GCATGC	1 cut(s)	621
PceI	AGGCCT	1 cut(s)	1235
PcsI	WCGNNNNNNNCGW	1 cut(s)	757
PctI	GAATGC	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	840
PfeI	GAWTC	2 cut(s)	276, 860
PflMI	CCANNNNNTGG	1 cut(s)	1112
PkrI	GCNGC	5 cut(s)	348, 704, 851, 1090, 1256
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	1031
PspPI	GGNCC	4 cut(s)	82, 353, 755, 941
PsrI	GAACNNNNNNTAC	2 cut(s)	481, 513
RsaI	GTAC	3 cut(s)	499, 748, 1117
RsaNI	GTAC	3 cut(s)	498, 747, 1116
SaqAI	TTAA	1 cut(s)	1068
SatI	GCNGC	5 cut(s)	347, 703, 850, 1089, 1255
Sau3AI	GATC	5 cut(s)	107, 118, 539, 569, 1147
Sau96I	GGNCC	4 cut(s)	82, 353, 755, 941
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	4 cut(s)	351, 645, 825, 1049
SduI	GDGCHC	2 cut(s)	221, 922
SfaNI	GCATC	4 cut(s)	511, 756, 768, 882
SinI	GGWCC	1 cut(s)	353
SphI	GCATGC	1 cut(s)	621
Sse9I	AATT	7 cut(s)	192, 291, 590, 933, 1016, 1072, 1268
SseBI	AGGCCT	1 cut(s)	1235
SsiI	CCGC	3 cut(s)	315, 758, 847
SspI	AATATT	1 cut(s)	1164
SspMI	CTAG	3 cut(s)	54, 162, 854
StuI	AGGCCT	1 cut(s)	1235
StyD4I	CCNGG	4 cut(s)	349, 643, 823, 1047
StyI	CCWWGG	2 cut(s)	516, 1200
TaaI	ACNGT	4 cut(s)	152, 924, 1023, 1057
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	232, 484
TasI	AATT	7 cut(s)	192, 291, 590, 933, 1016, 1072, 1268
TatI	WGTACW	1 cut(s)	497
TfiI	GAWTC	2 cut(s)	276, 860
Tru1I	TTAA	1 cut(s)	1068
Tru9I	TTAA	1 cut(s)	1068
TscAI	CASTG	2 cut(s)	380, 1028
TseI	GCWGC	5 cut(s)	346, 702, 849, 1088, 1254
TspDTI	ATGAA	4 cut(s)	370, 583, 852, 966
TspRI	CASTG	2 cut(s)	380, 1028
Van91I	CCANNNNNTGG	1 cut(s)	1112
VneI	GTGCAC	1 cut(s)	918
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	2 cut(s)	590, 1072
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	2 cut(s)	252, 621
XmnI	GAANNNNTTC	1 cut(s)	840
XspI	CTAG	3 cut(s)	54, 162, 854
Zsp2I	ATGCAT	2 cut(s)	771, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.