RLG00000001890

Tubby-like F-box protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
22577243 .. 22581344
4102 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001890

Sequence Viewer

Length: 1284 bp
ATGTCATTCCGTAGCATAGTTCGTGATGTTAGGGATGGCATTGGAAGCCTATCTAGACGGGGTTTTGAAGTCCGGCTGATGGGCCATCATAGAGGAAAATCTCATGGATCATTAAATGATTTGCATGACCCGCCTCTTGTTGTTCAGAATAGTTGTTGGGCTAGCCTCCCACCAGAACTATTGTATGATGTAATCAGGAGGCTGGAAGAGAGTGAGAGCACATGGCCTTCTCGAAAGCACGTTGTTGCATGTGCTTCAGTTTGCCGTTCTTGGAGAATGATGTGCAAAGAAATTGTTAAGAGTCCTGAGATCTGCGGGAAGCTTACTTTTCCAGTTTCACTGAAGCAGCCAGGTCCACGGGATGGACTCGTTCAGTGCTTCATTAAAAGGGATAAATCTAATCTAACATACCACCTGTATTTATGTCTAAGTCCTGCTTTGCTAGTTGAAAATGGAAAGTTCCTTCTTTCGGCAAAGAGGACTCGACGAACTACTTGTACAGAATATGTTATTTCTATGGATGCTGACAACATTTCAAGATCAAGCAACACTTACATTGGAAAGCTAAGATCAAACTTTCTTGGCACAAAATTCATCGTATATGATACGCAGCCTGCATGCACTTCTGAGCATATTACGCCCCCAGGACGGACGAGCCGTAGGTTTACTTCCAAAAAGGTCTCCCCAAAAGTCCCAACTGGTAGCTACAACATTGCTCAAATAACCTATGAGCTAAATGTGTTGGGCACTCGTGGCCCACGAAGGATGCATTGCATGATGCATTCTATCCCGGTGTCTTCTCTTGATGTGGGAGGTACTGTCCCCGGCCAACCGGAACTCCTTTCCCGCTCCCTAGAAGATTCATTCCGAAGTATCTCTTTCTCAAAGTCTCTCGACCACTCAGTTGAGTTCAGTAGTGCACGGTTTTCTGAAATCGGTGGGCCGCGGGATGATGTGGAGGATAGCAAAACAAGACCATTGGTTTTGAAAAACAAGCCCCCACGATGGCACGAACAATTACAGTGTTGGTGCCTAAACTTCCGAGGCCGGGTAACTGTTGCTTCTGTTAAGAACTTTCAGTTGATTGCTGCAATTCAGCCTGCACCAAGTGTTGCTGCACCTACTCCATCTCAGCCAGCGCCCCCTGAGCTTGATAAGATAATACTGCAGTTTGGCAAGGTCGGTAAAGACATGTTCACTATGGATTATCGTTATCCTTTATCTGCATTTCAGGCTTTTGCAATTTGCCTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG

Protein Analysis

428

Amino Acids

47.88

Weight (kDa)

9.46

Isoelectric Point (pI)

63.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 53 - 96 3.4e-06 F-box-like
Tub PF01167 114 - 422 8e-109 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1029
AccB7I CCANNNNNTGG 1 cut(s) 362
AccBSI CCGCTC 1 cut(s) 849
AccII CGCG 1 cut(s) 946
AciI CCGC 5 cut(s) 131, 315, 847, 944, 946
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 826
AcsI RAATTY 1 cut(s) 590
AcuI CTGAAG 2 cut(s) 240, 362
AdeI CACNNNGTG 1 cut(s) 1109
AfaI GTAC 2 cut(s) 499, 817
AfiI CCNNNNNNNGG 6 cut(s) 79, 362, 469, 648, 1005, 1048
AflIII ACRYGT 1 cut(s) 1191
AgsI TTSAA 4 cut(s) 68, 449, 537, 988
AjnI CCWGG 2 cut(s) 349, 643
AluBI AGCT 6 cut(s) 322, 565, 705, 733, 1150, 1257
AluI AGCT 6 cut(s) 322, 565, 705, 733, 1150, 1257
Alw21I GWGCWC 2 cut(s) 221, 922
Alw26I GTCTC 2 cut(s) 685, 894
Alw44I GTGCAC 1 cut(s) 918
AlwI GGATC 1 cut(s) 115
AoxI GGCC 6 cut(s) 82, 224, 754, 826, 941, 1045
ApaLI GTGCAC 1 cut(s) 918
ApeKI GCWGC 5 cut(s) 346, 610, 1088, 1115, 1254
ApoI RAATTY 1 cut(s) 590
AspLEI GCGC 1 cut(s) 1141
AspS9I GGNCC 4 cut(s) 82, 353, 755, 941
AsuC2I CCSGG 3 cut(s) 791, 825, 1049
AsuNHI GCTAGC 1 cut(s) 161
AvaII GGWCC 1 cut(s) 353
BaeGI GKGCMC 2 cut(s) 749, 922
BanI GGYRCC 1 cut(s) 1029
BarI GAAGNNNNNNTAC 2 cut(s) 652, 684
BauI CACGAG 1 cut(s) 750
BbsI GAAGAC 1 cut(s) 789
Bbv12I GWGCWC 2 cut(s) 221, 922
BbvI GCAGC 5 cut(s) 358, 622, 1075, 1102, 1266
BccI CCATC 6 cut(s) 29, 73, 93, 356, 999, 1135
BceAI ACGGC 2 cut(s) 249, 642
BciT130I CCWGG 2 cut(s) 351, 645
BcnI CCSGG 3 cut(s) 791, 825, 1049
BcoDI GTCTC 2 cut(s) 685, 894
BfaI CTAG 4 cut(s) 54, 162, 443, 854
BfmI CTRYAG 1 cut(s) 1166
BfoI RGCGCY 1 cut(s) 1142
BglII AGATCT 1 cut(s) 309
BisI GCNGC 6 cut(s) 347, 611, 944, 1089, 1116, 1255
BlsI GCNGC 6 cut(s) 348, 612, 945, 1090, 1117, 1256
Bme1390I CCNGG 5 cut(s) 351, 645, 791, 825, 1049
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 4 cut(s) 82, 353, 755, 941
BmiI GGNNCC 1 cut(s) 1031
BmrFI CCNGG 5 cut(s) 351, 645, 791, 825, 1049
BmsI GCATC 3 cut(s) 511, 756, 768
BmtI GCTAGC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 789
Bpu10I CCTNAGC 2 cut(s) 1146, 1250
BpuMI CCSGG 3 cut(s) 791, 825, 1049
BsaI GGTCTC 1 cut(s) 685
BsaJI CCNNGG 5 cut(s) 356, 643, 823, 944, 1042
BsaWI WCCGGW 1 cut(s) 832
BsaXI ACNNNNNCTCC 4 cut(s) 804, 822, 834, 852
Bsc4I CCNNNNNNNGG 6 cut(s) 79, 362, 469, 648, 1005, 1048
Bse1I ACTGG 2 cut(s) 332, 703
Bse3DI GCAATG 2 cut(s) 711, 769
BseBI CCWGG 2 cut(s) 351, 645
BseDI CCNNGG 5 cut(s) 356, 643, 823, 944, 1042
BseGI GGATG 5 cut(s) 40, 367, 526, 771, 955
BseLI CCNNNNNNNGG 6 cut(s) 79, 362, 469, 648, 1005, 1048
BseMI GCAATG 2 cut(s) 711, 769
BseMII CTCAG 6 cut(s) 297, 618, 915, 1137, 1145, 1241
BseNI ACTGG 2 cut(s) 332, 703
BseSI GKGCMC 2 cut(s) 749, 922
BseXI GCAGC 5 cut(s) 358, 622, 1075, 1102, 1266
BsgI GTGCAG 2 cut(s) 1086, 1101
Bsh1236I CGCG 1 cut(s) 946
BshFI GGCC 6 cut(s) 84, 226, 756, 828, 943, 1047
BshNI GGYRCC 1 cut(s) 1029
BsiHKAI GWGCWC 2 cut(s) 221, 922
BsiSI CCGG 5 cut(s) 73, 791, 825, 833, 1048
BslFI GGGAC 2 cut(s) 677, 806
BslI CCNNNNNNNGG 6 cut(s) 79, 362, 469, 648, 1005, 1048
BsmAI GTCTC 2 cut(s) 685, 894
BsmFI GGGAC 2 cut(s) 677, 806
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 6 cut(s) 84, 226, 756, 828, 943, 1047
Bso31I GGTCTC 1 cut(s) 685
Bsp1286I GDGCHC 3 cut(s) 221, 749, 922
Bsp1407I TGTACA 1 cut(s) 497
Bsp143I GATC 4 cut(s) 107, 309, 539, 569
BspACI CCGC 5 cut(s) 131, 315, 847, 944, 946
BspANI GGCC 6 cut(s) 84, 226, 756, 828, 943, 1047
BspCNI CTCAG 6 cut(s) 298, 619, 914, 1138, 1144, 1242
BspFNI CGCG 1 cut(s) 946
BspLI GGNNCC 1 cut(s) 1031
BspMAI CTGCAG 1 cut(s) 1170
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 1029
BspTNI GGTCTC 1 cut(s) 685
BsrBI CCGCTC 1 cut(s) 849
BsrDI GCAATG 2 cut(s) 711, 769
BsrGI TGTACA 1 cut(s) 497
BsrI ACTGG 2 cut(s) 332, 703
BssECI CCNNGG 5 cut(s) 356, 643, 823, 944, 1042
BssMI GATC 4 cut(s) 107, 309, 539, 569
BssSI CACGAG 1 cut(s) 750
Bst2BI CACGAG 1 cut(s) 750
Bst2UI CCWGG 2 cut(s) 351, 645
Bst4CI ACNGT 4 cut(s) 820, 924, 1023, 1057
Bst6I CTCTTC 1 cut(s) 201
BstAUI TGTACA 1 cut(s) 497
BstC8I GCNNGC 5 cut(s) 163, 615, 619, 1101, 1137
BstDEI CTNAG 8 cut(s) 306, 428, 566, 627, 901, 1131, 1146, 1250
BstDSI CCRYGG 2 cut(s) 356, 944
BstF5I GGATG 5 cut(s) 40, 367, 526, 771, 955
BstFNI CGCG 1 cut(s) 946
BstH2I RGCGCY 1 cut(s) 1142
BstHHI GCGC 1 cut(s) 1141
BstKTI GATC 4 cut(s) 110, 312, 542, 572
BstMAI GTCTC 2 cut(s) 685, 894
BstMBI GATC 4 cut(s) 107, 309, 539, 569
BstMWI GCNNNNNNNGC 7 cut(s) 45, 130, 637, 753, 1147, 1232, 1254
BstNI CCWGG 2 cut(s) 351, 645
BstNSI RCATGY 3 cut(s) 252, 621, 1195
BstSCI CCNGG 5 cut(s) 349, 643, 789, 823, 1047
BstSFI CTRYAG 1 cut(s) 1166
BstSLI GKGCMC 2 cut(s) 749, 922
BstUI CGCG 1 cut(s) 946
BstV1I GCAGC 5 cut(s) 358, 622, 1075, 1102, 1266
BstV2I GAAGAC 1 cut(s) 789
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
BsuRI GGCC 6 cut(s) 84, 226, 756, 828, 943, 1047
BtgI CCRYGG 2 cut(s) 356, 944
BtsCI GGATG 5 cut(s) 40, 367, 526, 771, 955
BtsIMutI CAGTG 3 cut(s) 338, 380, 1028
Cac8I GCNNGC 5 cut(s) 163, 615, 619, 1101, 1137
CfoI GCGC 1 cut(s) 1141
Cfr13I GGNCC 4 cut(s) 82, 353, 755, 941
Cfr42I CCGCGG 1 cut(s) 947
Csp6I GTAC 2 cut(s) 498, 816
CviAII CATG 7 cut(s) 104, 125, 222, 249, 618, 775, 1192
CviQI GTAC 2 cut(s) 498, 816
DdeI CTNAG 8 cut(s) 306, 428, 566, 627, 901, 1131, 1146, 1250
DpnI GATC 4 cut(s) 109, 311, 541, 571
DpnII GATC 4 cut(s) 107, 309, 539, 569
DraIII CACNNNGTG 1 cut(s) 1109
EaeI YGGCCR 1 cut(s) 826
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 685
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 2 cut(s) 240, 362
EcoRII CCWGG 2 cut(s) 349, 643
EcoT22I ATGCAT 2 cut(s) 771, 783
FaeI CATG 7 cut(s) 107, 128, 225, 252, 621, 778, 1195
FalI AAGNNNNNCTT 6 cut(s) 421, 453, 535, 567, 862, 894
FaqI GGGAC 2 cut(s) 677, 806
FatI CATG 7 cut(s) 103, 124, 221, 248, 617, 774, 1191
FauI CCCGC 4 cut(s) 138, 308, 854, 939
Fnu4HI GCNGC 6 cut(s) 347, 611, 944, 1089, 1116, 1255
FokI GGATG 5 cut(s) 47, 374, 533, 778, 962
Fsp4HI GCNGC 6 cut(s) 347, 611, 944, 1089, 1116, 1255
FspBI CTAG 4 cut(s) 54, 162, 443, 854
GlaI GCGC 1 cut(s) 1140
GluI GCNGC 6 cut(s) 347, 611, 944, 1089, 1116, 1255
HaeII RGCGCY 1 cut(s) 1142
HaeIII GGCC 6 cut(s) 84, 226, 756, 828, 943, 1047
HapII CCGG 5 cut(s) 73, 791, 825, 833, 1048
HhaI GCGC 1 cut(s) 1141
Hin1II CATG 7 cut(s) 107, 128, 225, 252, 621, 778, 1195
Hin6I GCGC 1 cut(s) 1139
HinP1I GCGC 1 cut(s) 1139
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 4 cut(s) 301, 366, 481, 860
HpaII CCGG 5 cut(s) 73, 791, 825, 833, 1048
Hpy166II GTNNAC 4 cut(s) 356, 666, 920, 1197
Hpy188I TCNGA 5 cut(s) 147, 628, 869, 931, 1043
Hpy188III TCNNGA 8 cut(s) 23, 54, 196, 231, 305, 537, 803, 893
Hpy8I GTNNAC 4 cut(s) 356, 666, 920, 1197
Hpy99I CGWCG 1 cut(s) 489
HpyAV CCTTC 3 cut(s) 237, 473, 756
HpyCH4III ACNGT 4 cut(s) 820, 924, 1023, 1057
HpyCH4IV ACGT 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 7 cut(s) 45, 130, 637, 753, 1147, 1232, 1254
HpyF3I CTNAG 8 cut(s) 306, 428, 566, 627, 901, 1131, 1146, 1250
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 7 cut(s) 107, 128, 225, 252, 621, 778, 1195
HspAI GCGC 1 cut(s) 1139
KspI CCGCGG 1 cut(s) 947
Kzo9I GATC 4 cut(s) 107, 309, 539, 569
LmnI GCTCC 1 cut(s) 854
Lsp1109I GCAGC 5 cut(s) 358, 622, 1075, 1102, 1266
LweI GCATC 3 cut(s) 511, 756, 768
MaeI CTAG 4 cut(s) 54, 162, 443, 854
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 1051
MalI GATC 4 cut(s) 109, 311, 541, 571
MbiI CCGCTC 1 cut(s) 849
MboI GATC 4 cut(s) 107, 309, 539, 569
MboII GAAGA 3 cut(s) 218, 789, 869
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 3 cut(s) 221, 749, 922
MluCI AATT 6 cut(s) 291, 590, 1016, 1092, 1242, 1268
MlyI GAGTC 3 cut(s) 310, 360, 475
MnlI CCTC 8 cut(s) 86, 144, 176, 192, 471, 806, 952, 1037
Mph1103I ATGCAT 2 cut(s) 771, 783
MseI TTAA 4 cut(s) 113, 297, 384, 1068
MspA1I CMGCKG 1 cut(s) 946
MspI CCGG 5 cut(s) 73, 791, 825, 833, 1048
MspR9I CCNGG 5 cut(s) 351, 645, 791, 825, 1049
Mva1269I GAATGC 1 cut(s) 781
MvaI CCWGG 2 cut(s) 351, 645
MvnI CGCG 1 cut(s) 946
MwoI GCNNNNNNNGC 7 cut(s) 45, 130, 637, 753, 1147, 1232, 1254
NciI CCSGG 3 cut(s) 791, 825, 1049
NdeII GATC 4 cut(s) 107, 309, 539, 569
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 7 cut(s) 107, 128, 225, 252, 621, 778, 1195
NlaIV GGNNCC 1 cut(s) 1031
NsiI ATGCAT 2 cut(s) 771, 783
NspI RCATGY 3 cut(s) 252, 621, 1195
PaeI GCATGC 1 cut(s) 621
PciI ACATGT 1 cut(s) 1191
PcsI WCGNNNNNNNCGW 2 cut(s) 655, 757
PctI GAATGC 1 cut(s) 781
PfeI GAWTC 1 cut(s) 860
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 6 cut(s) 348, 612, 945, 1090, 1117, 1256
PleI GAGTC 3 cut(s) 309, 360, 475
PpsI GAGTC 3 cut(s) 309, 360, 475
PscI ACATGT 1 cut(s) 1191
Psp6I CCWGG 2 cut(s) 349, 643
PspGI CCWGG 2 cut(s) 349, 643
PspN4I GGNNCC 1 cut(s) 1031
PspPI GGNCC 4 cut(s) 82, 353, 755, 941
PsrI GAACNNNNNNTAC 2 cut(s) 481, 513
PstI CTGCAG 1 cut(s) 1170
PsuI RGATCY 1 cut(s) 309
RsaI GTAC 2 cut(s) 499, 817
RsaNI GTAC 2 cut(s) 498, 816
SacII CCGCGG 1 cut(s) 947
SaqAI TTAA 4 cut(s) 113, 297, 384, 1068
SatI GCNGC 6 cut(s) 347, 611, 944, 1089, 1116, 1255
Sau3AI GATC 4 cut(s) 107, 309, 539, 569
Sau96I GGNCC 4 cut(s) 82, 353, 755, 941
SchI GAGTC 3 cut(s) 310, 360, 475
ScrFI CCNGG 5 cut(s) 351, 645, 791, 825, 1049
SduI GDGCHC 3 cut(s) 221, 749, 922
SfaNI GCATC 3 cut(s) 511, 756, 768
SfcI CTRYAG 1 cut(s) 1166
Sfr303I CCGCGG 1 cut(s) 947
SgrBI CCGCGG 1 cut(s) 947
SinI GGWCC 1 cut(s) 353
SphI GCATGC 1 cut(s) 621
Sse9I AATT 6 cut(s) 291, 590, 1016, 1092, 1242, 1268
SsiI CCGC 5 cut(s) 131, 315, 847, 944, 946
SspMI CTAG 4 cut(s) 54, 162, 443, 854
StyD4I CCNGG 5 cut(s) 349, 643, 789, 823, 1047
TaaI ACNGT 4 cut(s) 820, 924, 1023, 1057
TaiI ACGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 232, 484, 894
TasI AATT 6 cut(s) 291, 590, 1016, 1092, 1242, 1268
TatI WGTACW 1 cut(s) 497
TauI GCSGC 1 cut(s) 946
TfiI GAWTC 1 cut(s) 860
Tru1I TTAA 4 cut(s) 113, 297, 384, 1068
Tru9I TTAA 4 cut(s) 113, 297, 384, 1068
TscAI CASTG 3 cut(s) 345, 380, 1028
TseI GCWGC 5 cut(s) 346, 610, 1088, 1115, 1254
TspDTI ATGAA 3 cut(s) 370, 583, 852
TspGWI ACGGA 1 cut(s) 664
TspRI CASTG 3 cut(s) 345, 380, 1028
Van91I CCANNNNNTGG 1 cut(s) 362
VneI GTGCAC 1 cut(s) 918
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 1 cut(s) 590
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 3 cut(s) 252, 621, 1195
XspI CTAG 4 cut(s) 54, 162, 443, 854
Zsp2I ATGCAT 2 cut(s) 771, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.