Prupe.1G561700_v2.0.a1

Tubby-like F-box protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
45851474 .. 45857122
5649 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G561700.1

Sequence Viewer

Length: 1275 bp
ATGTCATTCCGTAGTATAGTTCGTGATGTTAGGGATGGCTTTGGAAGCTTGTCCAGACGGGGTTTTGAAGTCAGGCTGATGGGCCATCATAGAGGAAAATCTCATGGATCATTAAATGATTTACATGACCAGCCTCTCATTGTTCAGAACAGTCGTTGGGCTAGCCTTCCCCCAGAACTATTGTATGATGTAATTAGGAGGCTGGAGGAGAGTGAGAGCACGTGGCCTTCTCGAAGGCATGTTGTTGCATGCGCCTCAGTTTGTCGTTCTTGGAGGACCATGTGCAAAGAAATTGTTAAGAGTCCTGAGATCTGTGGGAAGCTCACTTTTCCTGTGTCGCTGAAGCAGCCTGGTCCACGAGATGGACTCGTTCAATGCTTCATTAAAAGGGATAAATCTAATCTAACATACCACCTGTTTCTGTGTCTTAGCCCTGCTTTGCTAGTGGAGAATGGGAAATTCCTTCTTTCTGCAAAGAGGACTCGACGAACTACTTGTACAGAATATGTCATTTCTATGGATGCTGACAACATTTCAAGATCAAGCAACGCTTACATTGGAAAGTTAAGGTCAAACTTTCTTGGCACAAAATTCATTGTATATGATACGCAGCCTGCATACACTTCTGAACATATTCCCCCACCAGGGCGGACAAGCCGTAGATTTAATTCCAAAAAAGTCTCCCCAAAAGTCCCGACTGGCAGCTATAATATTGCTCAGATAACATATGAGCTAAATGTGTTAGGCACTCGTGGCCCTAGAAGGATGCATTGCATCATGCATTCTATCCCGGTCTCATCTCTTGATGCAGGAGGTTCTGTCCCTGGCCAACCGGAACTCCTTACCCGCTCCCTGGAAGACTCCTTCCGAAGTGTATCTTTCTCCAAGTCTCTTGACCACTCAGTTGAATTCAGTAGTGCACGATTTTCTGAAATTGTTGGACCCCGAGATGATGAGGATGGCAAGACAAGACCCTTGGTTTTGAAAAACAAGCCTCCACGATGGCATGAACAACTACAGTGTTGGTGTCTGAACTTCCGAGGTCGGGTAACTGTTGCTTCTGTTAAGAACTTTCAGTTGATTGCTGCCACTCAGCCTGCTGCTGGTGCACCTACTCCATCTCAGCCAACGCCTCCCGAGCTTGATAAGATAATCTTGCAGTTTGGCAAGGTTGGTAAAGATATGTTCACAATGGATTATCGTTATCCTCTATCTGCATTTCAGGCTTTTGCCATCTGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG

Protein Analysis

425

Amino Acids

47.67

Weight (kDa)

9.59

Isoelectric Point (pI)

60.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 362
AccBSI CCGCTC 1 cut(s) 849
AciI CCGC 2 cut(s) 649, 847
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 826
AcsI RAATTY 3 cut(s) 458, 590, 908
AcuI CTGAAG 1 cut(s) 362
AcvI CACGTG 1 cut(s) 222
AfaI GTAC 1 cut(s) 499
AfiI CCNNNNNNNGG 6 cut(s) 362, 644, 645, 853, 1045, 1103
AgsI TTSAA 5 cut(s) 68, 374, 537, 908, 985
AjnI CCWGG 4 cut(s) 349, 643, 823, 852
AluBI AGCT 6 cut(s) 48, 322, 705, 733, 1141, 1248
AluI AGCT 6 cut(s) 48, 322, 705, 733, 1141, 1248
Alw21I GWGCWC 3 cut(s) 221, 922, 1111
Alw26I GTCTC 3 cut(s) 685, 799, 894
Alw44I GTGCAC 2 cut(s) 918, 1107
AlwI GGATC 1 cut(s) 115
Ama87I CYCGRG 2 cut(s) 945, 1136
AoxI GGCC 4 cut(s) 82, 224, 754, 826
ApaLI GTGCAC 2 cut(s) 918, 1107
ApeKI GCWGC 6 cut(s) 346, 610, 702, 1085, 1100, 1245
ApoI RAATTY 3 cut(s) 458, 590, 908
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 5 cut(s) 82, 276, 353, 755, 941
AsuC2I CCSGG 1 cut(s) 791
AsuNHI GCTAGC 1 cut(s) 161
AvaI CYCGRG 2 cut(s) 945, 1136
AvaII GGWCC 3 cut(s) 276, 353, 941
BaeGI GKGCMC 2 cut(s) 922, 1111
BalI TGGCCA 1 cut(s) 828
BauI CACGAG 2 cut(s) 357, 750
BbrPI CACGTG 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 864
Bbv12I GWGCWC 3 cut(s) 221, 922, 1111
BbvI GCAGC 6 cut(s) 358, 622, 714, 1072, 1087, 1257
BccI CCATC 8 cut(s) 29, 73, 93, 356, 953, 996, 1126, 1241
BceAI ACGGC 1 cut(s) 642
BciT130I CCWGG 4 cut(s) 351, 645, 825, 854
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 3 cut(s) 685, 799, 894
BfaI CTAG 3 cut(s) 162, 443, 759
BfmI CTRYAG 1 cut(s) 1016
BglII AGATCT 1 cut(s) 309
BisI GCNGC 6 cut(s) 347, 611, 703, 1086, 1101, 1246
BlsI GCNGC 6 cut(s) 348, 612, 704, 1087, 1102, 1247
Bme1390I CCNGG 5 cut(s) 351, 645, 791, 825, 854
Bme18I GGWCC 3 cut(s) 276, 353, 941
BmeT110I CYCGRG 2 cut(s) 945, 1136
BmgT120I GGNCC 5 cut(s) 82, 276, 353, 755, 941
BmiI GGNNCC 1 cut(s) 943
BmrFI CCNGG 5 cut(s) 351, 645, 791, 825, 854
BmsI GCATC 4 cut(s) 511, 756, 783, 796
BmtI GCTAGC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 864
BplI GAGNNNNNCTC 2 cut(s) 351, 383
BpmI CTGGAG 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 1261
BpuMI CCSGG 1 cut(s) 791
BsaAI YACGTR 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 799
BsaJI CCNNGG 5 cut(s) 644, 823, 852, 975, 1039
BsaWI WCCGGW 1 cut(s) 832
BsaXI ACNNNNNCTCC 4 cut(s) 804, 822, 834, 852
Bsc4I CCNNNNNNNGG 6 cut(s) 362, 644, 645, 853, 1045, 1103
Bse1I ACTGG 1 cut(s) 703
Bse3DI GCAATG 1 cut(s) 769
BseBI CCWGG 4 cut(s) 351, 645, 825, 854
BseDI CCNNGG 5 cut(s) 644, 823, 852, 975, 1039
BseGI GGATG 4 cut(s) 40, 526, 771, 964
BseLI CCNNNNNNNGG 6 cut(s) 362, 644, 645, 853, 1045, 1103
BseMI GCAATG 1 cut(s) 769
BseMII CTCAG 6 cut(s) 270, 297, 731, 915, 1106, 1136
BseNI ACTGG 1 cut(s) 703
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 2 cut(s) 922, 1111
BseXI GCAGC 6 cut(s) 358, 622, 714, 1072, 1087, 1257
BshFI GGCC 4 cut(s) 84, 226, 756, 828
BsiHKAI GWGCWC 3 cut(s) 221, 922, 1111
BsiHKCI CYCGRG 2 cut(s) 945, 1136
BsiSI CCGG 2 cut(s) 791, 833
BslFI GGGAC 2 cut(s) 677, 806
BslI CCNNNNNNNGG 6 cut(s) 362, 644, 645, 853, 1045, 1103
BsmAI GTCTC 3 cut(s) 685, 799, 894
BsmFI GGGAC 2 cut(s) 677, 806
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 4 cut(s) 84, 226, 756, 828
Bso31I GGTCTC 1 cut(s) 799
BsoBI CYCGRG 2 cut(s) 945, 1136
Bsp1286I GDGCHC 3 cut(s) 221, 922, 1111
Bsp1407I TGTACA 1 cut(s) 497
Bsp143I GATC 3 cut(s) 107, 309, 539
BspACI CCGC 2 cut(s) 649, 847
BspANI GGCC 4 cut(s) 84, 226, 756, 828
BspCNI CTCAG 6 cut(s) 269, 298, 730, 914, 1105, 1135
BspLI GGNNCC 1 cut(s) 943
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 799
BsrBI CCGCTC 1 cut(s) 849
BsrDI GCAATG 1 cut(s) 769
BsrGI TGTACA 1 cut(s) 497
BsrI ACTGG 1 cut(s) 703
BssECI CCNNGG 5 cut(s) 644, 823, 852, 975, 1039
BssMI GATC 3 cut(s) 107, 309, 539
BssSI CACGAG 2 cut(s) 357, 750
BssT1I CCWWGG 1 cut(s) 975
Bst2BI CACGAG 2 cut(s) 357, 750
Bst2UI CCWGG 4 cut(s) 351, 645, 825, 854
Bst4CI ACNGT 3 cut(s) 152, 1020, 1054
BstAUI TGTACA 1 cut(s) 497
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 4 cut(s) 163, 250, 615, 1098
BstDEI CTNAG 7 cut(s) 256, 306, 428, 717, 901, 1092, 1122
BstF5I GGATG 4 cut(s) 40, 526, 771, 964
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 3 cut(s) 110, 312, 542
BstMAI GTCTC 3 cut(s) 685, 799, 894
BstMBI GATC 3 cut(s) 107, 309, 539
BstMWI GCNNNNNNNGC 7 cut(s) 45, 346, 753, 1106, 1138, 1223, 1245
BstNI CCWGG 4 cut(s) 351, 645, 825, 854
BstNSI RCATGY 2 cut(s) 242, 252
BstSCI CCNGG 5 cut(s) 349, 643, 789, 823, 852
BstSFI CTRYAG 1 cut(s) 1016
BstSLI GKGCMC 2 cut(s) 922, 1111
BstV1I GCAGC 6 cut(s) 358, 622, 714, 1072, 1087, 1257
BstV2I GAAGAC 1 cut(s) 864
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
BsuRI GGCC 4 cut(s) 84, 226, 756, 828
BtsCI GGATG 4 cut(s) 40, 526, 771, 964
BtsIMutI CAGTG 1 cut(s) 1025
Cac8I GCNNGC 4 cut(s) 163, 250, 615, 1098
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 5 cut(s) 82, 276, 353, 755, 941
Csp6I GTAC 1 cut(s) 498
CviAII CATG 7 cut(s) 104, 125, 239, 249, 280, 778, 1007
CviQI GTAC 1 cut(s) 498
DdeI CTNAG 7 cut(s) 256, 306, 428, 717, 901, 1092, 1122
DpnI GATC 3 cut(s) 109, 311, 541
DpnII GATC 3 cut(s) 107, 309, 539
EaeI YGGCCR 1 cut(s) 826
EciI GGCGGA 1 cut(s) 664
Eco130I CCWWGG 1 cut(s) 975
Eco31I GGTCTC 1 cut(s) 799
Eco47I GGWCC 3 cut(s) 276, 353, 941
Eco57I CTGAAG 1 cut(s) 362
Eco72I CACGTG 1 cut(s) 222
Eco88I CYCGRG 2 cut(s) 945, 1136
EcoRI GAATTC 1 cut(s) 908
EcoRII CCWGG 4 cut(s) 349, 643, 823, 852
EcoT14I CCWWGG 1 cut(s) 975
EcoT22I ATGCAT 2 cut(s) 771, 783
ErhI CCWWGG 1 cut(s) 975
FaeI CATG 7 cut(s) 107, 128, 242, 252, 283, 781, 1010
FalI AAGNNNNNCTT 6 cut(s) 535, 567, 862, 894, 1139, 1171
FaqI GGGAC 2 cut(s) 677, 806
FatI CATG 7 cut(s) 103, 124, 238, 248, 279, 777, 1006
FauI CCCGC 1 cut(s) 854
FauNDI CATATG 1 cut(s) 727
Fnu4HI GCNGC 6 cut(s) 347, 611, 703, 1086, 1101, 1246
FokI GGATG 4 cut(s) 47, 533, 778, 971
Fsp4HI GCNGC 6 cut(s) 347, 611, 703, 1086, 1101, 1246
FspBI CTAG 3 cut(s) 162, 443, 759
GlaI GCGC 1 cut(s) 253
GluI GCNGC 6 cut(s) 347, 611, 703, 1086, 1101, 1246
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 4 cut(s) 84, 226, 756, 828
HapII CCGG 2 cut(s) 791, 833
HhaI GCGC 1 cut(s) 254
Hin1II CATG 7 cut(s) 107, 128, 242, 252, 283, 781, 1010
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 4 cut(s) 301, 366, 481, 860
HpaII CCGG 2 cut(s) 791, 833
Hpy166II GTNNAC 4 cut(s) 356, 920, 1109, 1188
Hpy188I TCNGA 7 cut(s) 147, 628, 720, 869, 931, 1032, 1040
Hpy188III TCNNGA 9 cut(s) 23, 54, 231, 305, 537, 694, 803, 893, 1136
Hpy8I GTNNAC 4 cut(s) 356, 920, 1109, 1188
Hpy99I CGWCG 1 cut(s) 489
HpyAV CCTTC 6 cut(s) 176, 228, 237, 473, 756, 874
HpyCH4III ACNGT 3 cut(s) 152, 1020, 1054
HpyCH4IV ACGT 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 7 cut(s) 45, 346, 753, 1106, 1138, 1223, 1245
HpyF3I CTNAG 7 cut(s) 256, 306, 428, 717, 901, 1092, 1122
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 7 cut(s) 107, 128, 242, 252, 283, 781, 1010
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 3 cut(s) 107, 309, 539
LmnI GCTCC 1 cut(s) 854
Lsp1109I GCAGC 6 cut(s) 358, 622, 714, 1072, 1087, 1257
LweI GCATC 4 cut(s) 511, 756, 783, 796
MaeI CTAG 3 cut(s) 162, 443, 759
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 1048
MalI GATC 3 cut(s) 109, 311, 541
MbiI CCGCTC 1 cut(s) 849
MboI GATC 3 cut(s) 107, 309, 539
MboII GAAGA 1 cut(s) 869
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 3 cut(s) 221, 922, 1111
MlsI TGGCCA 1 cut(s) 828
MluCI AATT 8 cut(s) 192, 291, 458, 590, 667, 908, 933, 1259
MluNI TGGCCA 1 cut(s) 828
MlyI GAGTC 4 cut(s) 310, 360, 475, 854
MmeI TCCRAC 1 cut(s) 919
Mox20I TGGCCA 1 cut(s) 828
Mph1103I ATGCAT 2 cut(s) 771, 783
MroXI GAANNNNTTC 1 cut(s) 633
MscI TGGCCA 1 cut(s) 828
MseI TTAA 6 cut(s) 113, 297, 384, 566, 666, 1065
MslI CAYNNNNRTG 1 cut(s) 515
Msp20I TGGCCA 1 cut(s) 828
MspI CCGG 2 cut(s) 791, 833
MspR9I CCNGG 5 cut(s) 351, 645, 791, 825, 854
Mva1269I GAATGC 1 cut(s) 781
MvaI CCWGG 4 cut(s) 351, 645, 825, 854
MwoI GCNNNNNNNGC 7 cut(s) 45, 346, 753, 1106, 1138, 1223, 1245
NciI CCSGG 1 cut(s) 791
NdeI CATATG 1 cut(s) 727
NdeII GATC 3 cut(s) 107, 309, 539
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 7 cut(s) 107, 128, 242, 252, 283, 781, 1010
NlaIV GGNNCC 1 cut(s) 943
NsiI ATGCAT 2 cut(s) 771, 783
NspI RCATGY 2 cut(s) 242, 252
PaeI GCATGC 1 cut(s) 252
PctI GAATGC 1 cut(s) 781
PdmI GAANNNNTTC 1 cut(s) 633
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 6 cut(s) 348, 612, 704, 1087, 1102, 1247
PleI GAGTC 4 cut(s) 309, 360, 475, 854
PmaCI CACGTG 1 cut(s) 222
PmlI CACGTG 1 cut(s) 222
PpsI GAGTC 4 cut(s) 309, 360, 475, 854
Ppu21I YACGTR 1 cut(s) 222
Psp6I CCWGG 4 cut(s) 349, 643, 823, 852
PspCI CACGTG 1 cut(s) 222
PspGI CCWGG 4 cut(s) 349, 643, 823, 852
PspN4I GGNNCC 1 cut(s) 943
PspPI GGNCC 5 cut(s) 82, 276, 353, 755, 941
PsrI GAACNNNNNNTAC 2 cut(s) 481, 513
PsuI RGATCY 1 cut(s) 309
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
RseI CAYNNNNRTG 1 cut(s) 515
SaqAI TTAA 6 cut(s) 113, 297, 384, 566, 666, 1065
SatI GCNGC 6 cut(s) 347, 611, 703, 1086, 1101, 1246
Sau3AI GATC 3 cut(s) 107, 309, 539
Sau96I GGNCC 5 cut(s) 82, 276, 353, 755, 941
SchI GAGTC 4 cut(s) 310, 360, 475, 854
ScrFI CCNGG 5 cut(s) 351, 645, 791, 825, 854
SduI GDGCHC 3 cut(s) 221, 922, 1111
SfaNI GCATC 4 cut(s) 511, 756, 783, 796
SfcI CTRYAG 1 cut(s) 1016
SinI GGWCC 3 cut(s) 276, 353, 941
SmiMI CAYNNNNRTG 1 cut(s) 515
SmlI CTYRAG 1 cut(s) 1240
SmoI CTYRAG 1 cut(s) 1240
SphI GCATGC 1 cut(s) 252
Sse9I AATT 8 cut(s) 192, 291, 458, 590, 667, 908, 933, 1259
SsiI CCGC 2 cut(s) 649, 847
SspI AATATT 1 cut(s) 712
SspMI CTAG 3 cut(s) 162, 443, 759
StyD4I CCNGG 5 cut(s) 349, 643, 789, 823, 852
StyI CCWWGG 1 cut(s) 975
TaaI ACNGT 3 cut(s) 152, 1020, 1054
TaiI ACGT 1 cut(s) 224
TaqI TCGA 2 cut(s) 232, 484
TasI AATT 8 cut(s) 192, 291, 458, 590, 667, 908, 933, 1259
TatI WGTACW 1 cut(s) 497
Tru1I TTAA 6 cut(s) 113, 297, 384, 566, 666, 1065
Tru9I TTAA 6 cut(s) 113, 297, 384, 566, 666, 1065
TscAI CASTG 1 cut(s) 1025
TseI GCWGC 6 cut(s) 346, 610, 702, 1085, 1100, 1245
TspDTI ATGAA 3 cut(s) 370, 583, 1023
TspRI CASTG 1 cut(s) 1025
Van91I CCANNNNNTGG 1 cut(s) 362
VneI GTGCAC 2 cut(s) 918, 1107
VpaK11BI GGWCC 3 cut(s) 276, 353, 941
XapI RAATTY 3 cut(s) 458, 590, 908
XceI RCATGY 2 cut(s) 242, 252
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 3 cut(s) 162, 443, 759
Zsp2I ATGCAT 2 cut(s) 771, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.