Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007029

Physical Location & Seq

Genomic Coordinates Reverse (-)

49979165 .. 49985590

Gene Structure 6426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG369400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAGTCTGAGTATAACGCTGGCATATATGTTTAGCAGTCGCTTCTTTAAACTAATAATTAATTTTTACCATTTTCAAATCATAAATTGCTATGCTCGCTTGATGAAGACCACCCATATATTGTTTTCCGTACTTTTACTTTGTCATATGTGTTTCTCTGAAGTTTACCTTCGGATTCTGAACATAATTTGTGTTTATCTCGTCAATTCTGCAGCTTTGCTAGTTGAAAATGGAAAGTTCCTTCTTTCGGCAAAGAGGACTCGACGAACTACTTGTACAGAATATGTTATTTCTATGGATGCTGACAACATTTCAAGATCAAGCAACACTTACATTGGAAAGCTAAGATCAAACTTTCTTGGCACAAAATTCATCGTGTATGATACGCAGCCTGCATGCACTTCTGAGCATATTACGCCCCCAGGACGGACGAGCCGTAGGTTTACTTCCAAAAAGGTGTCCCCAAAAGTCCCAACTGGCAGCTACAACATTGCTCAAATAACCTATGAGCTAAATGTGTTAGGCACTCGTGGCCCACGAAGGATGCATTGCATGATGCATTCTATCCCGGTATCTTCTCTTGATGTGGGAGGAACTGTCCCCGGCCAACCGGAACTCCTTTCCCGCTCCCTAGAAGATTCATTCCGAAGTATCTCTTTCTCAAAGTCTCTCGACCACTCAGTTGAGTTCAGTAGTGCACGGTTTTCTGAAATCGGTGGGCCGCGGGATGATGGGGAGGATAGCAAAACAAGACCATTGGTTTTGAAAAACAAGCCCCCACGATGGCACGAACAATTACAGTGTTGGTGCCTAAACTTCCGAGGCCGGGTAACTGTTGCTTCTGTTAAGAACTTTCAGTTGATTGCTGCAATTCAGCCTGCACCAAGTGTTGCTGCACCTACTCCATCTCAGCCAGCCCCCCCTGAGCTTGATAAGATAATACTGCAGTTTGGCAAGGTCGGTAAAGACATGTTCACTATGGATTATCGTTATCCTTTATCTGCATTTCAGGCTTTTGCAATTTGTCTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

353

Amino Acids

39.74

Weight (kDa)

9.4

Isoelectric Point (pI)

61.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	71 - 348	6.8e-96	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25280 AT1G25280 AT1G25280
fragaria_vesca	FvH4_5g30230 FvH4_5g30230 FvH4_5g30230 FvH4_5g30230
malus_domestica	MD08G1224600.v1.1 MD15G1417700.v1.1
prunus_persica	Prupe.1G561700_v2.0.a1 Prupe.1G561700_v2.0.a1 Prupe.1G561700_v2.0.a1
pyrus_communis	pycom08g19550 pycom15g37090
rosa_chinensis	RchiOBHm_Chr7g0224501
rosa_laevigata	RLG00000001890
rosa_multiflora	Rmu_sc0008421.1_g000006
rosa_roxburghii	Rroxscaffold_3G00234680
rosa_rugosa	Rorug07G0223800 Rorug07G0223800
rosa_samantha	Rh7AG379500 Rh7BG359900 Rh7CG398900 Rh7DG369400
rosa_wichuraiana	Rw7G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	807
AccBSI	CCGCTC	1 cut(s)	627
AccII	CGCG	1 cut(s)	724
AciI	CCGC	3 cut(s)	625, 722, 724
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	887
AfaI	GTAC	2 cut(s)	132, 277
AfiI	CCNNNNNNNGG	4 cut(s)	247, 426, 783, 826
AflIII	ACRYGT	1 cut(s)	969
AgsI	TTSAA	4 cut(s)	77, 227, 315, 766
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	6 cut(s)	215, 343, 483, 511, 928, 1035
AluI	AGCT	6 cut(s)	215, 343, 483, 511, 928, 1035
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	1 cut(s)	672
Alw44I	GTGCAC	1 cut(s)	696
AoxI	GGCC	4 cut(s)	532, 604, 719, 823
ApaLI	GTGCAC	1 cut(s)	696
ApeKI	GCWGC	6 cut(s)	212, 388, 480, 866, 893, 1032
ApoI	RAATTY	1 cut(s)	368
AseI	ATTAAT	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	533, 719
AsuC2I	CCSGG	3 cut(s)	569, 603, 827
BaeGI	GKGCMC	1 cut(s)	700
BanI	GGYRCC	1 cut(s)	807
BarI	GAAGNNNNNNTAC	2 cut(s)	430, 462
BauI	CACGAG	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	6 cut(s)	224, 400, 492, 853, 880, 1044
BccI	CCATC	3 cut(s)	725, 777, 913
BceAI	ACGGC	1 cut(s)	420
BciT130I	CCWGG	1 cut(s)	423
BcnI	CCSGG	3 cut(s)	569, 603, 827
BcoDI	GTCTC	1 cut(s)	672
BfaI	CTAG	2 cut(s)	221, 632
BfmI	CTRYAG	2 cut(s)	210, 944
BisI	GCNGC	7 cut(s)	213, 389, 481, 722, 867, 894, 1033
BlsI	GCNGC	7 cut(s)	214, 390, 482, 723, 868, 895, 1034
Bme1390I	CCNGG	4 cut(s)	423, 569, 603, 827
BmgT120I	GGNCC	2 cut(s)	533, 719
BmiI	GGNNCC	1 cut(s)	809
BmrFI	CCNGG	4 cut(s)	423, 569, 603, 827
BmsI	GCATC	3 cut(s)	289, 534, 546
BpiI	GAAGAC	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	924
BpuMI	CCSGG	3 cut(s)	569, 603, 827
BsaJI	CCNNGG	4 cut(s)	421, 601, 722, 820
BsaWI	WCCGGW	1 cut(s)	610
BsaXI	ACNNNNNCTCC	4 cut(s)	582, 600, 612, 630
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 426, 783, 826
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	2 cut(s)	489, 547
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	4 cut(s)	421, 601, 722, 820
BseGI	GGATG	3 cut(s)	304, 549, 733
BseLI	CCNNNNNNNGG	4 cut(s)	247, 426, 783, 826
BseMI	GCAATG	2 cut(s)	489, 547
BseMII	CTCAG	5 cut(s)	396, 693, 915, 923, 1019
BseNI	ACTGG	1 cut(s)	481
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	6 cut(s)	224, 400, 492, 853, 880, 1044
BsgI	GTGCAG	2 cut(s)	864, 879
Bsh1236I	CGCG	1 cut(s)	724
BshFI	GGCC	4 cut(s)	534, 606, 721, 825
BshNI	GGYRCC	1 cut(s)	807
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	4 cut(s)	569, 603, 611, 826
BslFI	GGGAC	3 cut(s)	445, 455, 584
BslI	CCNNNNNNNGG	4 cut(s)	247, 426, 783, 826
BsmAI	GTCTC	1 cut(s)	672
BsmFI	GGGAC	3 cut(s)	445, 455, 584
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	4 cut(s)	534, 606, 721, 825
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp1407I	TGTACA	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	317, 347
BspACI	CCGC	3 cut(s)	625, 722, 724
BspANI	GGCC	4 cut(s)	534, 606, 721, 825
BspCNI	CTCAG	5 cut(s)	397, 692, 916, 922, 1020
BspFNI	CGCG	1 cut(s)	724
BspLI	GGNNCC	1 cut(s)	809
BspMAI	CTGCAG	2 cut(s)	214, 948
BspT107I	GGYRCC	1 cut(s)	807
BsrBI	CCGCTC	1 cut(s)	627
BsrDI	GCAATG	2 cut(s)	489, 547
BsrGI	TGTACA	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	4 cut(s)	421, 601, 722, 820
BssMI	GATC	2 cut(s)	317, 347
BssSI	CACGAG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	4 cut(s)	598, 702, 801, 835
BstAUI	TGTACA	1 cut(s)	275
BstC8I	GCNNGC	6 cut(s)	21, 97, 393, 397, 879, 915
BstDEI	CTNAG	7 cut(s)	8, 344, 405, 679, 909, 924, 1028
BstDSI	CCRYGG	1 cut(s)	722
BstF5I	GGATG	3 cut(s)	304, 549, 733
BstFNI	CGCG	1 cut(s)	724
BstKTI	GATC	2 cut(s)	320, 350
BstMAI	GTCTC	1 cut(s)	672
BstMBI	GATC	2 cut(s)	317, 347
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 415, 531, 1010
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	2 cut(s)	399, 973
BstSCI	CCNGG	4 cut(s)	421, 567, 601, 825
BstSFI	CTRYAG	2 cut(s)	210, 944
BstSLI	GKGCMC	1 cut(s)	700
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	6 cut(s)	224, 400, 492, 853, 880, 1044
BstV2I	GAAGAC	1 cut(s)	113
BsuRI	GGCC	4 cut(s)	534, 606, 721, 825
BtgI	CCRYGG	1 cut(s)	722
BtsCI	GGATG	3 cut(s)	304, 549, 733
BtsIMutI	CAGTG	1 cut(s)	806
Cac8I	GCNNGC	6 cut(s)	21, 97, 393, 397, 879, 915
Cfr13I	GGNCC	2 cut(s)	533, 719
Cfr42I	CCGCGG	1 cut(s)	725
Csp6I	GTAC	2 cut(s)	131, 276
CviAII	CATG	3 cut(s)	396, 553, 970
CviQI	GTAC	2 cut(s)	131, 276
DdeI	CTNAG	7 cut(s)	8, 344, 405, 679, 909, 924, 1028
DpnI	GATC	2 cut(s)	319, 349
DpnII	GATC	2 cut(s)	317, 347
DraI	TTTAAA	1 cut(s)	49
DraIII	CACNNNGTG	1 cut(s)	887
EaeI	YGGCCR	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	421
EcoT22I	ATGCAT	2 cut(s)	549, 561
FaeI	CATG	3 cut(s)	399, 556, 973
FalI	AAGNNNNNCTT	6 cut(s)	153, 185, 313, 345, 640, 672
FaqI	GGGAC	3 cut(s)	445, 455, 584
FatI	CATG	3 cut(s)	395, 552, 969
FauI	CCCGC	2 cut(s)	632, 717
FauNDI	CATATG	1 cut(s)	147
Fnu4HI	GCNGC	7 cut(s)	213, 389, 481, 722, 867, 894, 1033
FokI	GGATG	3 cut(s)	311, 556, 740
Fsp4HI	GCNGC	7 cut(s)	213, 389, 481, 722, 867, 894, 1033
FspBI	CTAG	2 cut(s)	221, 632
GluI	GCNGC	7 cut(s)	213, 389, 481, 722, 867, 894, 1033
HaeIII	GGCC	4 cut(s)	534, 606, 721, 825
HapII	CCGG	4 cut(s)	569, 603, 611, 826
Hin1II	CATG	3 cut(s)	399, 556, 973
HinfI	GANTC	4 cut(s)	4, 175, 259, 638
HpaII	CCGG	4 cut(s)	569, 603, 611, 826
Hpy166II	GTNNAC	4 cut(s)	166, 444, 698, 975
Hpy188I	TCNGA	9 cut(s)	9, 160, 174, 180, 406, 647, 709, 821, 1029
Hpy188III	TCNNGA	3 cut(s)	315, 581, 671
Hpy8I	GTNNAC	4 cut(s)	166, 444, 698, 975
Hpy99I	CGWCG	1 cut(s)	267
HpyAV	CCTTC	3 cut(s)	179, 251, 534
HpyCH4III	ACNGT	4 cut(s)	598, 702, 801, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 415, 531, 1010
HpyF3I	CTNAG	7 cut(s)	8, 344, 405, 679, 909, 924, 1028
Hsp92II	CATG	3 cut(s)	399, 556, 973
KspI	CCGCGG	1 cut(s)	725
Kzo9I	GATC	2 cut(s)	317, 347
LmnI	GCTCC	1 cut(s)	632
Lsp1109I	GCAGC	6 cut(s)	224, 400, 492, 853, 880, 1044
LweI	GCATC	3 cut(s)	289, 534, 546
MaeI	CTAG	2 cut(s)	221, 632
MaeIII	GTNAC	1 cut(s)	829
MalI	GATC	2 cut(s)	319, 349
MbiI	CCGCTC	1 cut(s)	627
MboI	GATC	2 cut(s)	317, 347
MboII	GAAGA	3 cut(s)	118, 567, 647
MhlI	GDGCHC	1 cut(s)	700
MlyI	GAGTC	2 cut(s)	13, 253
MnlI	CCTC	4 cut(s)	249, 584, 730, 815
Mph1103I	ATGCAT	2 cut(s)	549, 561
MseI	TTAA	3 cut(s)	48, 60, 846
MspA1I	CMGCKG	1 cut(s)	724
MspI	CCGG	4 cut(s)	569, 603, 611, 826
MspR9I	CCNGG	4 cut(s)	423, 569, 603, 827
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	423
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	4 cut(s)	96, 415, 531, 1010
NciI	CCSGG	3 cut(s)	569, 603, 827
NdeI	CATATG	1 cut(s)	147
NdeII	GATC	2 cut(s)	317, 347
NlaIII	CATG	3 cut(s)	399, 556, 973
NlaIV	GGNNCC	1 cut(s)	809
NsiI	ATGCAT	2 cut(s)	549, 561
NspI	RCATGY	2 cut(s)	399, 973
PaeI	GCATGC	1 cut(s)	399
PciI	ACATGT	1 cut(s)	969
PcsI	WCGNNNNNNNCGW	2 cut(s)	433, 535
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	2 cut(s)	175, 638
PkrI	GCNGC	7 cut(s)	214, 390, 482, 723, 868, 895, 1034
PleI	GAGTC	2 cut(s)	12, 253
PpsI	GAGTC	2 cut(s)	12, 253
PscI	ACATGT	1 cut(s)	969
PshBI	ATTAAT	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	809
PspPI	GGNCC	2 cut(s)	533, 719
PsrI	GAACNNNNNNTAC	2 cut(s)	259, 291
PstI	CTGCAG	2 cut(s)	214, 948
RsaI	GTAC	2 cut(s)	132, 277
RsaNI	GTAC	2 cut(s)	131, 276
SacII	CCGCGG	1 cut(s)	725
SaqAI	TTAA	3 cut(s)	48, 60, 846
SatI	GCNGC	7 cut(s)	213, 389, 481, 722, 867, 894, 1033
Sau3AI	GATC	2 cut(s)	317, 347
Sau96I	GGNCC	2 cut(s)	533, 719
SchI	GAGTC	2 cut(s)	13, 253
ScrFI	CCNGG	4 cut(s)	423, 569, 603, 827
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	3 cut(s)	289, 534, 546
SfcI	CTRYAG	2 cut(s)	210, 944
Sfr303I	CCGCGG	1 cut(s)	725
SgrBI	CCGCGG	1 cut(s)	725
SphI	GCATGC	1 cut(s)	399
SsiI	CCGC	3 cut(s)	625, 722, 724
SspMI	CTAG	2 cut(s)	221, 632
StyD4I	CCNGG	4 cut(s)	421, 567, 601, 825
TaaI	ACNGT	4 cut(s)	598, 702, 801, 835
TaqI	TCGA	2 cut(s)	262, 672
TatI	WGTACW	1 cut(s)	275
TauI	GCSGC	1 cut(s)	724
TfiI	GAWTC	2 cut(s)	175, 638
Tru1I	TTAA	3 cut(s)	48, 60, 846
Tru9I	TTAA	3 cut(s)	48, 60, 846
TscAI	CASTG	1 cut(s)	806
TseI	GCWGC	6 cut(s)	212, 388, 480, 866, 893, 1032
TspDTI	ATGAA	3 cut(s)	119, 361, 630
TspGWI	ACGGA	2 cut(s)	118, 442
TspRI	CASTG	1 cut(s)	806
VneI	GTGCAC	1 cut(s)	696
VspI	ATTAAT	1 cut(s)	60
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	2 cut(s)	399, 973
XspI	CTAG	2 cut(s)	221, 632
Zsp2I	ATGCAT	2 cut(s)	549, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.