Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007029

Physical Location & Seq

Genomic Coordinates Reverse (-)

44529971 .. 44535847

Gene Structure 5877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G031210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGTCATTCCGTAGCATAGTTCGTGATGTTAGGGATGGCATTGGAAGCCTATCTAGACGGGGTTTTGAAGTCCGGCTGATGGGCCATCATAGAGGAAAATCTCATGGATCATTAAATGATTTGCATGACCCGCCTCTTGTTGTTCAGAACAGTCGTTGGGCTAGCCTCCCACCAGAACTATTGTATGATGTAATCAGGAGGCTGGAAGAGAGTGAGAGCACATGGCCTTCTCGAAAGCACGTTGTTGCATGTGCTTCAGTTTGCCGTTCTTGGAGAATGATGTGCAAAGAAATTGTTAAGAGTCCTGAGATCTGCGGGAAGCTTACTTTTCCAGTTTCACTGAAGCAGCCAGGTCCACGGGATGGACTCGTTCAGTGCTTCATTAAAAGGGATAAATCTAATCTAACATACCACCTGTATTTATGTCTTAGTCCTGCTTTGCTAGTTGAAAATGGAAAGTTCCTTCTTTCGGCAAAGAGGACTCGACGAACTACTTGTACAGAATATGTTATTTCTATGGATGCTGACAACATTTCAAGATCAAGCAACACTTACATTGGAAAGCTAAGATCAAACTTTCTTGGCACAAAATTCATCGTGTATGATACGCAGCCTGCATGCACTTCTGAGCATATTACGCCCCCAGGACGGACGAGCCGTAGGTTTACTTCAAAAAAGGTGTCCCCAAAAGTCCCAACTGGCAGCTACAACATTGCTCAAATAACCTATGAGCTAAATGTGTTAGGCACTCGTGGCCCACGAAGGATGCATTGCATGATGCATTCTATCCCGGTATCTTCTCTTGATGTGGGAGGAACTGTCCCCGGCCAACCGGAACTCCTTTCCCGCTCCCTAGAAGATTCATTCCGAAGTATCTCTTTCTCAAAGTCTCTCGACCACTCAGTTGAGTTCAGTAGTGCACGGTTTTCTGAAATCGGTGGGCCGCGGGATGATGGGGAGGATAGCAAAACAAGACCATTGGTTTTGAAAAACAAGCCCCCACGATGGCACGAACAATTACAGTGTTGGTGCCTAAACTTCCGAGGCCGGGTAACTGTTGCTTCTGTTAAGAACTTTCAGTTGATTGCTGCAATTCAGCCTGCACCAAGTGTTGCTGCACCTACTCCATCTCAGCCAGCCCCCCCTGAGCTTGATAAGATAATACTGCAGTTTGGCAAGGTCGGTAAAGACATGTTCACTATGGATTATCGTTATCCTTTATCTGCATTTCAGGCTTTTGCAATTTGCCTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

427

Amino Acids

47.89

Weight (kDa)

9.54

Isoelectric Point (pI)

63.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	53 - 96	3.4e-06	F-box-like
Tub	PF01167	114 - 422	8.5e-109	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25280 AT1G25280 AT1G25280
fragaria_vesca	FvH4_5g30230 FvH4_5g30230 FvH4_5g30230 FvH4_5g30230
malus_domestica	MD08G1224600.v1.1 MD15G1417700.v1.1
prunus_persica	Prupe.1G561700_v2.0.a1 Prupe.1G561700_v2.0.a1 Prupe.1G561700_v2.0.a1
pyrus_communis	pycom08g19550 pycom15g37090
rosa_chinensis	RchiOBHm_Chr7g0224501
rosa_laevigata	RLG00000001890
rosa_multiflora	Rmu_sc0008421.1_g000006
rosa_roxburghii	Rroxscaffold_3G00234680
rosa_rugosa	Rorug07G0223800 Rorug07G0223800
rosa_samantha	Rh7AG379500 Rh7BG359900 Rh7CG398900 Rh7DG369400
rosa_wichuraiana	Rw7G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1029
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccBSI	CCGCTC	1 cut(s)	849
AccII	CGCG	1 cut(s)	946
AciI	CCGC	5 cut(s)	131, 315, 847, 944, 946
AclWI	GGATC	1 cut(s)	115
AcoI	YGGCCR	1 cut(s)	826
AcsI	RAATTY	1 cut(s)	590
AcuI	CTGAAG	2 cut(s)	240, 362
AdeI	CACNNNGTG	1 cut(s)	1109
AfaI	GTAC	1 cut(s)	499
AfiI	CCNNNNNNNGG	6 cut(s)	79, 362, 469, 648, 1005, 1048
AflIII	ACRYGT	1 cut(s)	1191
AgsI	TTSAA	5 cut(s)	68, 449, 537, 672, 988
AjnI	CCWGG	2 cut(s)	349, 643
AluBI	AGCT	6 cut(s)	322, 565, 705, 733, 1150, 1257
AluI	AGCT	6 cut(s)	322, 565, 705, 733, 1150, 1257
Alw21I	GWGCWC	2 cut(s)	221, 922
Alw26I	GTCTC	1 cut(s)	894
Alw44I	GTGCAC	1 cut(s)	918
AlwI	GGATC	1 cut(s)	115
AoxI	GGCC	6 cut(s)	82, 224, 754, 826, 941, 1045
ApaLI	GTGCAC	1 cut(s)	918
ApeKI	GCWGC	6 cut(s)	346, 610, 702, 1088, 1115, 1254
ApoI	RAATTY	1 cut(s)	590
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AspS9I	GGNCC	4 cut(s)	82, 353, 755, 941
AsuC2I	CCSGG	3 cut(s)	791, 825, 1049
AsuNHI	GCTAGC	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	922
BanI	GGYRCC	1 cut(s)	1029
BarI	GAAGNNNNNNTAC	2 cut(s)	652, 684
BauI	CACGAG	1 cut(s)	750
Bbv12I	GWGCWC	2 cut(s)	221, 922
BbvI	GCAGC	6 cut(s)	358, 622, 714, 1075, 1102, 1266
BccI	CCATC	7 cut(s)	29, 73, 93, 356, 947, 999, 1135
BceAI	ACGGC	2 cut(s)	249, 642
BciT130I	CCWGG	2 cut(s)	351, 645
BcnI	CCSGG	3 cut(s)	791, 825, 1049
BcoDI	GTCTC	1 cut(s)	894
BfaI	CTAG	4 cut(s)	54, 162, 443, 854
BfmI	CTRYAG	1 cut(s)	1166
BglII	AGATCT	1 cut(s)	309
BisI	GCNGC	7 cut(s)	347, 611, 703, 944, 1089, 1116, 1255
BlsI	GCNGC	7 cut(s)	348, 612, 704, 945, 1090, 1117, 1256
Bme1390I	CCNGG	5 cut(s)	351, 645, 791, 825, 1049
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	4 cut(s)	82, 353, 755, 941
BmiI	GGNNCC	1 cut(s)	1031
BmrFI	CCNGG	5 cut(s)	351, 645, 791, 825, 1049
BmsI	GCATC	3 cut(s)	511, 756, 768
BmtI	GCTAGC	1 cut(s)	165
Bpu10I	CCTNAGC	2 cut(s)	1146, 1250
BpuMI	CCSGG	3 cut(s)	791, 825, 1049
BsaJI	CCNNGG	5 cut(s)	356, 643, 823, 944, 1042
BsaWI	WCCGGW	1 cut(s)	832
BsaXI	ACNNNNNCTCC	4 cut(s)	804, 822, 834, 852
Bsc4I	CCNNNNNNNGG	6 cut(s)	79, 362, 469, 648, 1005, 1048
Bse1I	ACTGG	2 cut(s)	332, 703
Bse3DI	GCAATG	2 cut(s)	711, 769
BseBI	CCWGG	2 cut(s)	351, 645
BseDI	CCNNGG	5 cut(s)	356, 643, 823, 944, 1042
BseGI	GGATG	5 cut(s)	40, 367, 526, 771, 955
BseLI	CCNNNNNNNGG	6 cut(s)	79, 362, 469, 648, 1005, 1048
BseMI	GCAATG	2 cut(s)	711, 769
BseMII	CTCAG	6 cut(s)	297, 618, 915, 1137, 1145, 1241
BseNI	ACTGG	2 cut(s)	332, 703
BseSI	GKGCMC	1 cut(s)	922
BseXI	GCAGC	6 cut(s)	358, 622, 714, 1075, 1102, 1266
BsgI	GTGCAG	2 cut(s)	1086, 1101
Bsh1236I	CGCG	1 cut(s)	946
BshFI	GGCC	6 cut(s)	84, 226, 756, 828, 943, 1047
BshNI	GGYRCC	1 cut(s)	1029
BsiHKAI	GWGCWC	2 cut(s)	221, 922
BsiSI	CCGG	5 cut(s)	73, 791, 825, 833, 1048
BslFI	GGGAC	3 cut(s)	667, 677, 806
BslI	CCNNNNNNNGG	6 cut(s)	79, 362, 469, 648, 1005, 1048
BsmAI	GTCTC	1 cut(s)	894
BsmFI	GGGAC	3 cut(s)	667, 677, 806
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	6 cut(s)	84, 226, 756, 828, 943, 1047
Bsp1286I	GDGCHC	2 cut(s)	221, 922
Bsp1407I	TGTACA	1 cut(s)	497
Bsp143I	GATC	4 cut(s)	107, 309, 539, 569
BspACI	CCGC	5 cut(s)	131, 315, 847, 944, 946
BspANI	GGCC	6 cut(s)	84, 226, 756, 828, 943, 1047
BspCNI	CTCAG	6 cut(s)	298, 619, 914, 1138, 1144, 1242
BspFNI	CGCG	1 cut(s)	946
BspLI	GGNNCC	1 cut(s)	1031
BspMAI	CTGCAG	1 cut(s)	1170
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	1029
BsrBI	CCGCTC	1 cut(s)	849
BsrDI	GCAATG	2 cut(s)	711, 769
BsrGI	TGTACA	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	332, 703
BssECI	CCNNGG	5 cut(s)	356, 643, 823, 944, 1042
BssMI	GATC	4 cut(s)	107, 309, 539, 569
BssSI	CACGAG	1 cut(s)	750
Bst2BI	CACGAG	1 cut(s)	750
Bst2UI	CCWGG	2 cut(s)	351, 645
Bst4CI	ACNGT	5 cut(s)	152, 820, 924, 1023, 1057
Bst6I	CTCTTC	1 cut(s)	201
BstAUI	TGTACA	1 cut(s)	497
BstC8I	GCNNGC	5 cut(s)	163, 615, 619, 1101, 1137
BstDEI	CTNAG	8 cut(s)	306, 428, 566, 627, 901, 1131, 1146, 1250
BstDSI	CCRYGG	2 cut(s)	356, 944
BstF5I	GGATG	5 cut(s)	40, 367, 526, 771, 955
BstFNI	CGCG	1 cut(s)	946
BstKTI	GATC	4 cut(s)	110, 312, 542, 572
BstMAI	GTCTC	1 cut(s)	894
BstMBI	GATC	4 cut(s)	107, 309, 539, 569
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 130, 637, 753, 1232, 1254
BstNI	CCWGG	2 cut(s)	351, 645
BstNSI	RCATGY	3 cut(s)	252, 621, 1195
BstSCI	CCNGG	5 cut(s)	349, 643, 789, 823, 1047
BstSFI	CTRYAG	1 cut(s)	1166
BstSLI	GKGCMC	1 cut(s)	922
BstUI	CGCG	1 cut(s)	946
BstV1I	GCAGC	6 cut(s)	358, 622, 714, 1075, 1102, 1266
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	6 cut(s)	84, 226, 756, 828, 943, 1047
BtgI	CCRYGG	2 cut(s)	356, 944
BtsCI	GGATG	5 cut(s)	40, 367, 526, 771, 955
BtsIMutI	CAGTG	3 cut(s)	338, 380, 1028
Cac8I	GCNNGC	5 cut(s)	163, 615, 619, 1101, 1137
Cfr13I	GGNCC	4 cut(s)	82, 353, 755, 941
Cfr42I	CCGCGG	1 cut(s)	947
Csp6I	GTAC	1 cut(s)	498
CviAII	CATG	7 cut(s)	104, 125, 222, 249, 618, 775, 1192
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	8 cut(s)	306, 428, 566, 627, 901, 1131, 1146, 1250
DpnI	GATC	4 cut(s)	109, 311, 541, 571
DpnII	GATC	4 cut(s)	107, 309, 539, 569
DraIII	CACNNNGTG	1 cut(s)	1109
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	2 cut(s)	240, 362
EcoRII	CCWGG	2 cut(s)	349, 643
EcoT22I	ATGCAT	2 cut(s)	771, 783
FaeI	CATG	7 cut(s)	107, 128, 225, 252, 621, 778, 1195
FalI	AAGNNNNNCTT	4 cut(s)	535, 567, 862, 894
FaqI	GGGAC	3 cut(s)	667, 677, 806
FatI	CATG	7 cut(s)	103, 124, 221, 248, 617, 774, 1191
FauI	CCCGC	4 cut(s)	138, 308, 854, 939
Fnu4HI	GCNGC	7 cut(s)	347, 611, 703, 944, 1089, 1116, 1255
FokI	GGATG	5 cut(s)	47, 374, 533, 778, 962
Fsp4HI	GCNGC	7 cut(s)	347, 611, 703, 944, 1089, 1116, 1255
FspBI	CTAG	4 cut(s)	54, 162, 443, 854
GluI	GCNGC	7 cut(s)	347, 611, 703, 944, 1089, 1116, 1255
HaeIII	GGCC	6 cut(s)	84, 226, 756, 828, 943, 1047
HapII	CCGG	5 cut(s)	73, 791, 825, 833, 1048
Hin1II	CATG	7 cut(s)	107, 128, 225, 252, 621, 778, 1195
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	4 cut(s)	301, 366, 481, 860
HpaII	CCGG	5 cut(s)	73, 791, 825, 833, 1048
Hpy166II	GTNNAC	4 cut(s)	356, 666, 920, 1197
Hpy188I	TCNGA	5 cut(s)	147, 628, 869, 931, 1043
Hpy188III	TCNNGA	8 cut(s)	23, 54, 196, 231, 305, 537, 803, 893
Hpy8I	GTNNAC	4 cut(s)	356, 666, 920, 1197
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	3 cut(s)	237, 473, 756
HpyCH4III	ACNGT	5 cut(s)	152, 820, 924, 1023, 1057
HpyCH4IV	ACGT	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 130, 637, 753, 1232, 1254
HpyF3I	CTNAG	8 cut(s)	306, 428, 566, 627, 901, 1131, 1146, 1250
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	7 cut(s)	107, 128, 225, 252, 621, 778, 1195
KspI	CCGCGG	1 cut(s)	947
Kzo9I	GATC	4 cut(s)	107, 309, 539, 569
LmnI	GCTCC	1 cut(s)	854
Lsp1109I	GCAGC	6 cut(s)	358, 622, 714, 1075, 1102, 1266
LweI	GCATC	3 cut(s)	511, 756, 768
MaeI	CTAG	4 cut(s)	54, 162, 443, 854
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	1051
MalI	GATC	4 cut(s)	109, 311, 541, 571
MbiI	CCGCTC	1 cut(s)	849
MboI	GATC	4 cut(s)	107, 309, 539, 569
MboII	GAAGA	3 cut(s)	218, 789, 869
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	2 cut(s)	221, 922
MluCI	AATT	6 cut(s)	291, 590, 1016, 1092, 1242, 1268
MlyI	GAGTC	3 cut(s)	310, 360, 475
MnlI	CCTC	8 cut(s)	86, 144, 176, 192, 471, 806, 952, 1037
Mph1103I	ATGCAT	2 cut(s)	771, 783
MseI	TTAA	4 cut(s)	113, 297, 384, 1068
MspA1I	CMGCKG	1 cut(s)	946
MspI	CCGG	5 cut(s)	73, 791, 825, 833, 1048
MspR9I	CCNGG	5 cut(s)	351, 645, 791, 825, 1049
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	2 cut(s)	351, 645
MvnI	CGCG	1 cut(s)	946
MwoI	GCNNNNNNNGC	6 cut(s)	45, 130, 637, 753, 1232, 1254
NciI	CCSGG	3 cut(s)	791, 825, 1049
NdeII	GATC	4 cut(s)	107, 309, 539, 569
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	7 cut(s)	107, 128, 225, 252, 621, 778, 1195
NlaIV	GGNNCC	1 cut(s)	1031
NsiI	ATGCAT	2 cut(s)	771, 783
NspI	RCATGY	3 cut(s)	252, 621, 1195
PaeI	GCATGC	1 cut(s)	621
PciI	ACATGT	1 cut(s)	1191
PcsI	WCGNNNNNNNCGW	2 cut(s)	655, 757
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	1 cut(s)	860
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	7 cut(s)	348, 612, 704, 945, 1090, 1117, 1256
PleI	GAGTC	3 cut(s)	309, 360, 475
PpsI	GAGTC	3 cut(s)	309, 360, 475
PscI	ACATGT	1 cut(s)	1191
Psp6I	CCWGG	2 cut(s)	349, 643
PspGI	CCWGG	2 cut(s)	349, 643
PspN4I	GGNNCC	1 cut(s)	1031
PspPI	GGNCC	4 cut(s)	82, 353, 755, 941
PsrI	GAACNNNNNNTAC	2 cut(s)	481, 513
PstI	CTGCAG	1 cut(s)	1170
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
SacII	CCGCGG	1 cut(s)	947
SaqAI	TTAA	4 cut(s)	113, 297, 384, 1068
SatI	GCNGC	7 cut(s)	347, 611, 703, 944, 1089, 1116, 1255
Sau3AI	GATC	4 cut(s)	107, 309, 539, 569
Sau96I	GGNCC	4 cut(s)	82, 353, 755, 941
SchI	GAGTC	3 cut(s)	310, 360, 475
ScrFI	CCNGG	5 cut(s)	351, 645, 791, 825, 1049
SduI	GDGCHC	2 cut(s)	221, 922
SfaNI	GCATC	3 cut(s)	511, 756, 768
SfcI	CTRYAG	1 cut(s)	1166
Sfr303I	CCGCGG	1 cut(s)	947
SgrBI	CCGCGG	1 cut(s)	947
SinI	GGWCC	1 cut(s)	353
SphI	GCATGC	1 cut(s)	621
Sse9I	AATT	6 cut(s)	291, 590, 1016, 1092, 1242, 1268
SsiI	CCGC	5 cut(s)	131, 315, 847, 944, 946
SspMI	CTAG	4 cut(s)	54, 162, 443, 854
StyD4I	CCNGG	5 cut(s)	349, 643, 789, 823, 1047
TaaI	ACNGT	5 cut(s)	152, 820, 924, 1023, 1057
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	3 cut(s)	232, 484, 894
TasI	AATT	6 cut(s)	291, 590, 1016, 1092, 1242, 1268
TatI	WGTACW	1 cut(s)	497
TauI	GCSGC	1 cut(s)	946
TfiI	GAWTC	1 cut(s)	860
Tru1I	TTAA	4 cut(s)	113, 297, 384, 1068
Tru9I	TTAA	4 cut(s)	113, 297, 384, 1068
TscAI	CASTG	3 cut(s)	345, 380, 1028
TseI	GCWGC	6 cut(s)	346, 610, 702, 1088, 1115, 1254
TspDTI	ATGAA	3 cut(s)	370, 583, 852
TspGWI	ACGGA	1 cut(s)	664
TspRI	CASTG	3 cut(s)	345, 380, 1028
Van91I	CCANNNNNTGG	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	918
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	590
XbaI	TCTAGA	1 cut(s)	53
XceI	RCATGY	3 cut(s)	252, 621, 1195
XspI	CTAG	4 cut(s)	54, 162, 443, 854
Zsp2I	ATGCAT	2 cut(s)	771, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.