MD15G1417700.v1.1

Tubby-like F-box protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
51943502 .. 51948974
5473 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1417700.v1.1.491

Sequence Viewer

Length: 1275 bp
ATGTCATTCCGTAGCATAGTTCGTGATGTTAGGGATGGCTTTGGGAGCTTATCTAGACGGGGTTTTGAAGTCCGGTTGACGGGCCATCATAGAGGAAAATCGCATGGATCGTTAAATGATTTACACGACCAGCCTCTCATTGTTCAAAACAGTCGTTGGGCTAGCCTCCCCCCAGAACTATTATATGATGTCATTAGGAGGCTGGAGGAGAGTGAGAGCACTTGGCCTTCTCGAAAGCATGTTGTTGCATGTGCCTCAGTTTGCCGTTCTTGGAGGATTATGTGCAAAGAAATCGTTAAGAAGCCTGAGATCTGTGGGAAGCTTACTTTTCCTGTGTCGCTGAAGCAGCCAGGTCCACGGGATGGACTCGTTCAATGCTTCATTAAAAGGGATAAATCTAATTTAACATACCACCTATTTCTCTGTCTTAGCCCTGCTTTGCTAGTTGAGAATGGGAAATTCCTTCTTTCAGCAAAGAGGACAAGAAGAACTACTTGTACAGAATATGTTATCTCTATGGATGCTGACAACATTTCTAGATCAAGCAGCAGTTACATTGGAAAGTTAAGGTCAAACTTTCTTGGCACAAAATTCATTGTATATGATACGCAGCCTGCATACACTTCTGAACATGTTCCCCCACCAGGGCGGTTGAGCCGTAGATTTAATTCCAAAAAAGTCTCCCCAAAAGTCCCGACTGGCAGCTATAACATTGCTCAGATAGCGTATGAGCTAAATGTGTTGGGCACACGCGGTCCTAGAAGGATGCACTGCATCATGCATTCTATCCCGGTCTCATCTCTTGATGCAGGAAGTACCGTCCCTGGCCAACCGGAACTCCTTACCCGTGCCTTGGAAGACTCATTCCGAAGTATCTCATTCTCAAAGTCTCTTGACCACTCAGTTGAATTCAGCAGTTCACGATTTTCTGAAATCGCTGGACCCCGAGATGATGTGGATAGCAAGACAAGACCCTTGGTTTTGAAAAACAAGCCCCCACGATGGCATGAACAGTTACAGTGTTGGTGCCTGAACTTCCGAGGCCGGGTAACCGTTGCTTCTGTTAAGAACTTCCAGTTGATTGCTGCTACTCAGCCTGCTGCCAGTGCACCTACTCCATCACAGCCAGCGCCACCAGATCTCGACAAGATAATCTTGCAGTTTGGCAAGGTTGGTAAAGATATGTTCACGATGGATTATCGTTATCCTTTATCTGCATTTCAGGCCTTTGCCATCTGCTTGAGCAGCTTTGACACAAAATTGGCTTGTGAATAG

Protein Analysis

425

Amino Acids

47.64

Weight (kDa)

9.66

Isoelectric Point (pI)

58.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 53 - 96 7.6e-06 F-box-like
Tub PF01167 114 - 419 4.4e-108 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1026
AccB7I CCANNNNNTGG 1 cut(s) 362
AccII CGCG 1 cut(s) 753
AciI CCGC 2 cut(s) 649, 753
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 826
AcsI RAATTY 3 cut(s) 458, 590, 908
AcuI CTGAAG 1 cut(s) 362
AfaI GTAC 2 cut(s) 499, 817
AfiI CCNNNNNNNGG 7 cut(s) 79, 362, 644, 645, 853, 1002, 1045
AflIII ACRYGT 1 cut(s) 631
AgsI TTSAA 5 cut(s) 68, 146, 374, 908, 985
AjnI CCWGG 3 cut(s) 349, 643, 823
AluBI AGCT 5 cut(s) 48, 322, 705, 733, 1248
AluI AGCT 5 cut(s) 48, 322, 705, 733, 1248
Alw21I GWGCWC 2 cut(s) 221, 1111
Alw26I GTCTC 3 cut(s) 685, 799, 894
Alw44I GTGCAC 1 cut(s) 1107
AlwI GGATC 1 cut(s) 115
Ama87I CYCGRG 1 cut(s) 945
AoxI GGCC 5 cut(s) 82, 224, 826, 1042, 1224
ApaLI GTGCAC 1 cut(s) 1107
ApeKI GCWGC 7 cut(s) 346, 546, 610, 702, 1085, 1100, 1245
ApoI RAATTY 3 cut(s) 458, 590, 908
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 1 cut(s) 1132
AspS9I GGNCC 4 cut(s) 82, 353, 755, 941
AsuC2I CCSGG 2 cut(s) 791, 1046
AsuNHI GCTAGC 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 945
AvaII GGWCC 3 cut(s) 353, 755, 941
BaeGI GKGCMC 2 cut(s) 749, 1111
BalI TGGCCA 1 cut(s) 828
BanI GGYRCC 1 cut(s) 1026
BbsI GAAGAC 1 cut(s) 864
Bbv12I GWGCWC 2 cut(s) 221, 1111
BbvI GCAGC 7 cut(s) 358, 558, 622, 714, 1072, 1087, 1257
BccI CCATC 7 cut(s) 29, 93, 356, 996, 1126, 1186, 1241
BceAI ACGGC 2 cut(s) 249, 642
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 3 cut(s) 351, 645, 825
BcnI CCSGG 2 cut(s) 791, 1046
BcoDI GTCTC 3 cut(s) 685, 799, 894
BfaI CTAG 5 cut(s) 54, 162, 443, 537, 759
BfoI RGCGCY 1 cut(s) 1133
BglII AGATCT 2 cut(s) 309, 1138
BisI GCNGC 7 cut(s) 347, 547, 611, 703, 1086, 1101, 1246
BlsI GCNGC 7 cut(s) 348, 548, 612, 704, 1087, 1102, 1247
Bme1390I CCNGG 5 cut(s) 351, 645, 791, 825, 1046
Bme18I GGWCC 3 cut(s) 353, 755, 941
BmeT110I CYCGRG 1 cut(s) 945
BmgT120I GGNCC 4 cut(s) 82, 353, 755, 941
BmiI GGNNCC 2 cut(s) 943, 1028
BmrFI CCNGG 5 cut(s) 351, 645, 791, 825, 1046
BmsI GCATC 4 cut(s) 511, 756, 783, 796
BmtI GCTAGC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 864
BpmI CTGGAG 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 1261
BpuMI CCSGG 2 cut(s) 791, 1046
BsaI GGTCTC 1 cut(s) 799
BsaJI CCNNGG 6 cut(s) 356, 644, 823, 852, 975, 1039
BsaWI WCCGGW 2 cut(s) 72, 832
BsaXI ACNNNNNCTCC 2 cut(s) 822, 852
Bsc4I CCNNNNNNNGG 7 cut(s) 79, 362, 644, 645, 853, 1002, 1045
Bse1I ACTGG 3 cut(s) 703, 1075, 1104
Bse3DI GCAATG 1 cut(s) 711
BseBI CCWGG 3 cut(s) 351, 645, 825
BseDI CCNNGG 6 cut(s) 356, 644, 823, 852, 975, 1039
BseGI GGATG 4 cut(s) 40, 367, 526, 771
BseLI CCNNNNNNNGG 7 cut(s) 79, 362, 644, 645, 853, 1002, 1045
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 5 cut(s) 270, 297, 731, 915, 1106
BseNI ACTGG 3 cut(s) 703, 1075, 1104
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 2 cut(s) 749, 1111
BseXI GCAGC 7 cut(s) 358, 558, 622, 714, 1072, 1087, 1257
Bsh1236I CGCG 1 cut(s) 753
BshFI GGCC 5 cut(s) 84, 226, 828, 1044, 1226
BshNI GGYRCC 1 cut(s) 1026
BsiHKAI GWGCWC 2 cut(s) 221, 1111
BsiHKCI CYCGRG 1 cut(s) 945
BsiSI CCGG 4 cut(s) 73, 791, 833, 1045
BslFI GGGAC 2 cut(s) 677, 806
BslI CCNNNNNNNGG 7 cut(s) 79, 362, 644, 645, 853, 1002, 1045
BsmAI GTCTC 3 cut(s) 685, 799, 894
BsmFI GGGAC 2 cut(s) 677, 806
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 5 cut(s) 84, 226, 828, 1044, 1226
Bso31I GGTCTC 1 cut(s) 799
BsoBI CYCGRG 1 cut(s) 945
Bsp1286I GDGCHC 3 cut(s) 221, 749, 1111
Bsp1407I TGTACA 1 cut(s) 497
Bsp143I GATC 4 cut(s) 107, 309, 539, 1138
BspACI CCGC 2 cut(s) 649, 753
BspANI GGCC 5 cut(s) 84, 226, 828, 1044, 1226
BspCNI CTCAG 5 cut(s) 269, 298, 730, 914, 1105
BspFNI CGCG 1 cut(s) 753
BspLI GGNNCC 2 cut(s) 943, 1028
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 1026
BspTNI GGTCTC 1 cut(s) 799
BsrDI GCAATG 1 cut(s) 711
BsrGI TGTACA 1 cut(s) 497
BsrI ACTGG 3 cut(s) 703, 1075, 1104
BssECI CCNNGG 6 cut(s) 356, 644, 823, 852, 975, 1039
BssMI GATC 4 cut(s) 107, 309, 539, 1138
BssT1I CCWWGG 2 cut(s) 852, 975
Bst2UI CCWGG 3 cut(s) 351, 645, 825
Bst4CI ACNGT 5 cut(s) 152, 820, 1014, 1020, 1054
BstAUI TGTACA 1 cut(s) 497
BstC8I GCNNGC 4 cut(s) 163, 615, 1098, 1128
BstDEI CTNAG 6 cut(s) 256, 306, 428, 717, 901, 1092
BstDSI CCRYGG 1 cut(s) 356
BstEII GGTNACC 1 cut(s) 1048
BstF5I GGATG 4 cut(s) 40, 367, 526, 771
BstFNI CGCG 1 cut(s) 753
BstH2I RGCGCY 1 cut(s) 1133
BstHHI GCGC 1 cut(s) 1132
BstKTI GATC 4 cut(s) 110, 312, 542, 1141
BstMAI GTCTC 3 cut(s) 685, 799, 894
BstMBI GATC 4 cut(s) 107, 309, 539, 1138
BstMWI GCNNNNNNNGC 6 cut(s) 45, 346, 722, 1106, 1223, 1245
BstNI CCWGG 3 cut(s) 351, 645, 825
BstNSI RCATGY 3 cut(s) 242, 252, 635
BstPI GGTNACC 1 cut(s) 1048
BstSCI CCNGG 5 cut(s) 349, 643, 789, 823, 1044
BstSLI GKGCMC 2 cut(s) 749, 1111
BstUI CGCG 1 cut(s) 753
BstV1I GCAGC 7 cut(s) 358, 558, 622, 714, 1072, 1087, 1257
BstV2I GAAGAC 1 cut(s) 864
BstX2I RGATCY 2 cut(s) 309, 1138
BstYI RGATCY 2 cut(s) 309, 1138
BsuRI GGCC 5 cut(s) 84, 226, 828, 1044, 1226
BtgI CCRYGG 1 cut(s) 356
BtsCI GGATG 4 cut(s) 40, 367, 526, 771
BtsI GCAGTG 1 cut(s) 769
BtsIMutI CAGTG 3 cut(s) 769, 1025, 1111
Cac8I GCNNGC 4 cut(s) 163, 615, 1098, 1128
CfoI GCGC 1 cut(s) 1132
Cfr13I GGNCC 4 cut(s) 82, 353, 755, 941
Csp6I GTAC 2 cut(s) 498, 816
CviAII CATG 6 cut(s) 104, 239, 249, 632, 778, 1007
CviQI GTAC 2 cut(s) 498, 816
DdeI CTNAG 6 cut(s) 256, 306, 428, 717, 901, 1092
DpnI GATC 4 cut(s) 109, 311, 541, 1140
DpnII GATC 4 cut(s) 107, 309, 539, 1138
EaeI YGGCCR 1 cut(s) 826
Eco130I CCWWGG 2 cut(s) 852, 975
Eco147I AGGCCT 1 cut(s) 1226
Eco31I GGTCTC 1 cut(s) 799
Eco47I GGWCC 3 cut(s) 353, 755, 941
Eco57I CTGAAG 1 cut(s) 362
Eco88I CYCGRG 1 cut(s) 945
Eco91I GGTNACC 1 cut(s) 1048
EcoO65I GGTNACC 1 cut(s) 1048
EcoRI GAATTC 1 cut(s) 908
EcoRII CCWGG 3 cut(s) 349, 643, 823
EcoT14I CCWWGG 2 cut(s) 852, 975
EcoT22I ATGCAT 1 cut(s) 783
ErhI CCWWGG 2 cut(s) 852, 975
FaeI CATG 6 cut(s) 107, 242, 252, 635, 781, 1010
FalI AAGNNNNNCTT 4 cut(s) 478, 510, 1139, 1171
FaqI GGGAC 2 cut(s) 677, 806
FatI CATG 6 cut(s) 103, 238, 248, 631, 777, 1006
Fnu4HI GCNGC 7 cut(s) 347, 547, 611, 703, 1086, 1101, 1246
FokI GGATG 4 cut(s) 47, 374, 533, 778
Fsp4HI GCNGC 7 cut(s) 347, 547, 611, 703, 1086, 1101, 1246
FspBI CTAG 5 cut(s) 54, 162, 443, 537, 759
GlaI GCGC 1 cut(s) 1131
GluI GCNGC 7 cut(s) 347, 547, 611, 703, 1086, 1101, 1246
GsuI CTGGAG 1 cut(s) 224
HaeII RGCGCY 1 cut(s) 1133
HaeIII GGCC 5 cut(s) 84, 226, 828, 1044, 1226
HapII CCGG 4 cut(s) 73, 791, 833, 1045
HhaI GCGC 1 cut(s) 1132
Hin1II CATG 6 cut(s) 107, 242, 252, 635, 781, 1010
Hin6I GCGC 1 cut(s) 1130
HinP1I GCGC 1 cut(s) 1130
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 2 cut(s) 366, 860
HpaII CCGG 4 cut(s) 73, 791, 833, 1045
Hpy166II GTNNAC 5 cut(s) 78, 356, 920, 1109, 1188
Hpy188I TCNGA 5 cut(s) 628, 720, 869, 931, 1040
Hpy8I GTNNAC 5 cut(s) 78, 356, 920, 1109, 1188
HpyAV CCTTC 3 cut(s) 237, 473, 756
HpyCH4III ACNGT 5 cut(s) 152, 820, 1014, 1020, 1054
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 346, 722, 1106, 1223, 1245
HpyF3I CTNAG 6 cut(s) 256, 306, 428, 717, 901, 1092
Hsp92II CATG 6 cut(s) 107, 242, 252, 635, 781, 1010
HspAI GCGC 1 cut(s) 1130
Kzo9I GATC 4 cut(s) 107, 309, 539, 1138
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 7 cut(s) 358, 558, 622, 714, 1072, 1087, 1257
LweI GCATC 4 cut(s) 511, 756, 783, 796
MaeI CTAG 5 cut(s) 54, 162, 443, 537, 759
MaeIII GTNAC 3 cut(s) 551, 1014, 1048
MalI GATC 4 cut(s) 109, 311, 541, 1140
MboI GATC 4 cut(s) 107, 309, 539, 1138
MboII GAAGA 2 cut(s) 498, 869
MflI RGATCY 2 cut(s) 309, 1138
MhlI GDGCHC 3 cut(s) 221, 749, 1111
MlsI TGGCCA 1 cut(s) 828
MluCI AATT 6 cut(s) 400, 458, 590, 667, 908, 1259
MluNI TGGCCA 1 cut(s) 828
MlyI GAGTC 2 cut(s) 360, 854
MnlI CCTC 9 cut(s) 86, 144, 176, 192, 199, 265, 267, 471, 1034
Mox20I TGGCCA 1 cut(s) 828
Mph1103I ATGCAT 1 cut(s) 783
MroXI GAANNNNTTC 1 cut(s) 633
MscI TGGCCA 1 cut(s) 828
MseI TTAA 7 cut(s) 113, 297, 384, 404, 566, 666, 1065
Msp20I TGGCCA 1 cut(s) 828
MspI CCGG 4 cut(s) 73, 791, 833, 1045
MspR9I CCNGG 5 cut(s) 351, 645, 791, 825, 1046
Mva1269I GAATGC 1 cut(s) 781
MvaI CCWGG 3 cut(s) 351, 645, 825
MvnI CGCG 1 cut(s) 753
MwoI GCNNNNNNNGC 6 cut(s) 45, 346, 722, 1106, 1223, 1245
NciI CCSGG 2 cut(s) 791, 1046
NdeII GATC 4 cut(s) 107, 309, 539, 1138
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 6 cut(s) 107, 242, 252, 635, 781, 1010
NlaIV GGNNCC 2 cut(s) 943, 1028
NsiI ATGCAT 1 cut(s) 783
NspI RCATGY 3 cut(s) 242, 252, 635
PceI AGGCCT 1 cut(s) 1226
PciI ACATGT 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PctI GAATGC 1 cut(s) 781
PdmI GAANNNNTTC 1 cut(s) 633
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 7 cut(s) 348, 548, 612, 704, 1087, 1102, 1247
PleI GAGTC 2 cut(s) 360, 854
PpsI GAGTC 2 cut(s) 360, 854
PscI ACATGT 1 cut(s) 631
Psp6I CCWGG 3 cut(s) 349, 643, 823
PspEI GGTNACC 1 cut(s) 1048
PspGI CCWGG 3 cut(s) 349, 643, 823
PspN4I GGNNCC 2 cut(s) 943, 1028
PspPI GGNCC 4 cut(s) 82, 353, 755, 941
PsrI GAACNNNNNNTAC 2 cut(s) 481, 513
PsuI RGATCY 2 cut(s) 309, 1138
RsaI GTAC 2 cut(s) 499, 817
RsaNI GTAC 2 cut(s) 498, 816
SaqAI TTAA 7 cut(s) 113, 297, 384, 404, 566, 666, 1065
SatI GCNGC 7 cut(s) 347, 547, 611, 703, 1086, 1101, 1246
Sau3AI GATC 4 cut(s) 107, 309, 539, 1138
Sau96I GGNCC 4 cut(s) 82, 353, 755, 941
SchI GAGTC 2 cut(s) 360, 854
ScrFI CCNGG 5 cut(s) 351, 645, 791, 825, 1046
SduI GDGCHC 3 cut(s) 221, 749, 1111
SfaNI GCATC 4 cut(s) 511, 756, 783, 796
SinI GGWCC 3 cut(s) 353, 755, 941
SmlI CTYRAG 1 cut(s) 1240
SmoI CTYRAG 1 cut(s) 1240
Sse9I AATT 6 cut(s) 400, 458, 590, 667, 908, 1259
SseBI AGGCCT 1 cut(s) 1226
SsiI CCGC 2 cut(s) 649, 753
SspMI CTAG 5 cut(s) 54, 162, 443, 537, 759
StuI AGGCCT 1 cut(s) 1226
StyD4I CCNGG 5 cut(s) 349, 643, 789, 823, 1044
StyI CCWWGG 2 cut(s) 852, 975
TaaI ACNGT 5 cut(s) 152, 820, 1014, 1020, 1054
TaqI TCGA 2 cut(s) 232, 1143
TasI AATT 6 cut(s) 400, 458, 590, 667, 908, 1259
TatI WGTACW 1 cut(s) 497
Tru1I TTAA 7 cut(s) 113, 297, 384, 404, 566, 666, 1065
Tru9I TTAA 7 cut(s) 113, 297, 384, 404, 566, 666, 1065
TscAI CASTG 3 cut(s) 776, 1025, 1111
TseI GCWGC 7 cut(s) 346, 546, 610, 702, 1085, 1100, 1245
TspDTI ATGAA 3 cut(s) 370, 583, 1023
TspRI CASTG 3 cut(s) 776, 1025, 1111
Van91I CCANNNNNTGG 1 cut(s) 362
VneI GTGCAC 1 cut(s) 1107
VpaK11BI GGWCC 3 cut(s) 353, 755, 941
XapI RAATTY 3 cut(s) 458, 590, 908
XbaI TCTAGA 2 cut(s) 53, 536
XceI RCATGY 3 cut(s) 242, 252, 635
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 5 cut(s) 54, 162, 443, 537, 759
Zsp2I ATGCAT 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.