Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008421.1

Orthogroup ID

OG0007029

Physical Location & Seq

Genomic Coordinates Reverse (-)

32861 .. 37663

Gene Structure 4803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008421.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

atgcttagaattttagatctttggcttgctgtaatcaagcaatggagcagctttgactttgaccagctgaagctcagattagctgggttttttttatttttttttgttggtgtgatcgctcttggtacaacccaagtggaaaatcagaggattttgaaggagatacataatttattttcttgtgcacaagtaggaatgtcattccgtagcatagttcgtgatgttagggatggcattggaagcctatctagacggggttttgaagtccggctgatgggccatcatagaggaaaatctcatggatcattaaatgatttgcatgacccgcctcttgttgttcagaacagtcgttgggctagcctcccaccagaactattgtatgatgtaatcaggaggctggaagagagtgagagcacatggccttctcgaaagcacgttgttgcatgtgcttcagtttgccgttcttggagaatgatgtgcaaagaaattgttaagagtcctgagatctgcgggaagcttacttttccagtttcactgaagcagccaggtccacgggatggactcgttcagtgcttcattaaaagggataaatctaatctaacataccacctgtatttatgtcttagtcctgctttgctagttgaaaatggaaagttccttctttcggcaaagaggactcgacgaactacttgtacagaatatgttatttctatggatgctgacaacatttcaagatcaagcaacacttacattggaaagctaagatcaaactttcttggcacaaaattcatcgtgtatgatacgcagcctgcatgcacttctgagcatattacgcccccaggacggacgagccgtaggtttacttccaaaaaggtgtccccaaaagtcccaactggcagctacaacattgctcaaataacctatgagctaaatgtgttaggcactcgtggcccacgaaggatgcattgcatgatgcattctatcccggtatcttctcttgatgtgggaggaactgtccccggccaaccggaactcctttcccgctccctagaagattcattccgaagtatctctttctcaaagtctctcgaccactcagttgagttcagtagtgcacggttttctgaaatcggtgggccgcgggatgatggggaggatagcaaaacaagaccattggttttgaaaaacaagcccccacgatggcacgaacaattacagtgttggtgcctaaacttccgaggccgggtaactgttgcttctgttaagaactttcagttgattgctgcaattcagcctgcaccaagtgttgctgcacctactccatctcagccagccccccctgagcttgataagataatactgcagtttggcaaggtcggtaaagacatgttcactatggattatcgttatcctttatctgcatttcaggcttttgcaatttgtctgagcagctttgacaccaaattggcttgtgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

492

Amino Acids

55.42

Weight (kDa)

9.52

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25280 AT1G25280 AT1G25280
fragaria_vesca	FvH4_5g30230 FvH4_5g30230 FvH4_5g30230 FvH4_5g30230
malus_domestica	MD08G1224600.v1.1 MD15G1417700.v1.1
prunus_persica	Prupe.1G561700_v2.0.a1 Prupe.1G561700_v2.0.a1 Prupe.1G561700_v2.0.a1
pyrus_communis	pycom08g19550 pycom15g37090
rosa_chinensis	RchiOBHm_Chr7g0224501
rosa_laevigata	RLG00000001890
rosa_multiflora	Rmu_sc0008421.1_g000006
rosa_roxburghii	Rroxscaffold_3G00234680
rosa_rugosa	Rorug07G0223800 Rorug07G0223800
rosa_samantha	Rh7AG379500 Rh7BG359900 Rh7CG398900 Rh7DG369400
rosa_wichuraiana	Rw7G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1224
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccBSI	CCGCTC	1 cut(s)	1044
AccII	CGCG	1 cut(s)	1141
AciI	CCGC	5 cut(s)	326, 510, 1042, 1139, 1141
AclWI	GGATC	1 cut(s)	310
AcoI	YGGCCR	1 cut(s)	1021
AcsI	RAATTY	2 cut(s)	9, 785
AcuI	CTGAAG	3 cut(s)	89, 435, 557
AdeI	CACNNNGTG	1 cut(s)	1304
AfaI	GTAC	2 cut(s)	127, 694
AfiI	CCNNNNNNNGG	6 cut(s)	274, 557, 664, 843, 1200, 1243
AflIII	ACRYGT	1 cut(s)	1386
AgsI	TTSAA	5 cut(s)	157, 263, 644, 732, 1183
AjnI	CCWGG	2 cut(s)	544, 838
Alw21I	GWGCWC	3 cut(s)	187, 416, 1117
Alw26I	GTCTC	1 cut(s)	1089
Alw44I	GTGCAC	2 cut(s)	183, 1113
AlwI	GGATC	1 cut(s)	310
AoxI	GGCC	6 cut(s)	277, 419, 949, 1021, 1136, 1240
ApaLI	GTGCAC	2 cut(s)	183, 1113
ApeKI	GCWGC	7 cut(s)	48, 541, 805, 897, 1283, 1310, 1449
ApoI	RAATTY	2 cut(s)	9, 785
AspS9I	GGNCC	4 cut(s)	277, 548, 950, 1136
AsuC2I	CCSGG	3 cut(s)	986, 1020, 1244
AsuNHI	GCTAGC	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	548
BaeGI	GKGCMC	2 cut(s)	187, 1117
BanI	GGYRCC	1 cut(s)	1224
BarI	GAAGNNNNNNTAC	2 cut(s)	847, 879
BauI	CACGAG	1 cut(s)	945
Bbv12I	GWGCWC	3 cut(s)	187, 416, 1117
BbvI	GCAGC	7 cut(s)	60, 553, 817, 909, 1270, 1297, 1461
BccI	CCATC	7 cut(s)	224, 268, 288, 551, 1142, 1194, 1330
BceAI	ACGGC	2 cut(s)	444, 837
BciT130I	CCWGG	2 cut(s)	546, 840
BcnI	CCSGG	3 cut(s)	986, 1020, 1244
BcoDI	GTCTC	1 cut(s)	1089
BfaI	CTAG	4 cut(s)	249, 357, 638, 1049
BfmI	CTRYAG	1 cut(s)	1361
BglII	AGATCT	2 cut(s)	16, 504
BisI	GCNGC	8 cut(s)	49, 542, 806, 898, 1139, 1284, 1311, 1450
BlsI	GCNGC	8 cut(s)	50, 543, 807, 899, 1140, 1285, 1312, 1451
Bme1390I	CCNGG	5 cut(s)	546, 840, 986, 1020, 1244
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	4 cut(s)	277, 548, 950, 1136
BmiI	GGNNCC	1 cut(s)	1226
BmrFI	CCNGG	5 cut(s)	546, 840, 986, 1020, 1244
BmsI	GCATC	3 cut(s)	706, 951, 963
BmtI	GCTAGC	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	1341
BpuMI	CCSGG	3 cut(s)	986, 1020, 1244
BsaJI	CCNNGG	5 cut(s)	551, 838, 1018, 1139, 1237
BsaWI	WCCGGW	1 cut(s)	1027
BsaXI	ACNNNNNCTCC	4 cut(s)	999, 1017, 1029, 1047
Bsc4I	CCNNNNNNNGG	6 cut(s)	274, 557, 664, 843, 1200, 1243
Bse1I	ACTGG	2 cut(s)	527, 898
Bse3DI	GCAATG	3 cut(s)	47, 906, 964
BseBI	CCWGG	2 cut(s)	546, 840
BseDI	CCNNGG	5 cut(s)	551, 838, 1018, 1139, 1237
BseGI	GGATG	5 cut(s)	235, 562, 721, 966, 1150
BseLI	CCNNNNNNNGG	6 cut(s)	274, 557, 664, 843, 1200, 1243
BseMI	GCAATG	3 cut(s)	47, 906, 964
BseMII	CTCAG	7 cut(s)	88, 492, 813, 1110, 1332, 1340, 1436
BseNI	ACTGG	2 cut(s)	527, 898
BseSI	GKGCMC	2 cut(s)	187, 1117
BseXI	GCAGC	7 cut(s)	60, 553, 817, 909, 1270, 1297, 1461
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	2 cut(s)	1281, 1296
Bsh1236I	CGCG	1 cut(s)	1141
BshFI	GGCC	6 cut(s)	279, 421, 951, 1023, 1138, 1242
BshNI	GGYRCC	1 cut(s)	1224
BsiHKAI	GWGCWC	3 cut(s)	187, 416, 1117
BsiSI	CCGG	5 cut(s)	268, 986, 1020, 1028, 1243
BslFI	GGGAC	3 cut(s)	862, 872, 1001
BslI	CCNNNNNNNGG	6 cut(s)	274, 557, 664, 843, 1200, 1243
BsmAI	GTCTC	1 cut(s)	1089
BsmFI	GGGAC	3 cut(s)	862, 872, 1001
BsmI	GAATGC	1 cut(s)	976
BsnI	GGCC	6 cut(s)	279, 421, 951, 1023, 1138, 1242
Bsp1286I	GDGCHC	3 cut(s)	187, 416, 1117
Bsp1407I	TGTACA	1 cut(s)	692
Bsp143I	GATC	6 cut(s)	16, 114, 302, 504, 734, 764
BspACI	CCGC	5 cut(s)	326, 510, 1042, 1139, 1141
BspANI	GGCC	6 cut(s)	279, 421, 951, 1023, 1138, 1242
BspCNI	CTCAG	7 cut(s)	87, 493, 814, 1109, 1333, 1339, 1437
BspFNI	CGCG	1 cut(s)	1141
BspLI	GGNNCC	1 cut(s)	1226
BspMAI	CTGCAG	1 cut(s)	1365
BspOI	GCTAGC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	310
BspT107I	GGYRCC	1 cut(s)	1224
BsrBI	CCGCTC	1 cut(s)	1044
BsrDI	GCAATG	3 cut(s)	47, 906, 964
BsrGI	TGTACA	1 cut(s)	692
BsrI	ACTGG	2 cut(s)	527, 898
BssECI	CCNNGG	5 cut(s)	551, 838, 1018, 1139, 1237
BssMI	GATC	6 cut(s)	16, 114, 302, 504, 734, 764
BssSI	CACGAG	1 cut(s)	945
Bst2BI	CACGAG	1 cut(s)	945
Bst2UI	CCWGG	2 cut(s)	546, 840
Bst4CI	ACNGT	5 cut(s)	347, 1015, 1119, 1218, 1252
Bst6I	CTCTTC	1 cut(s)	396
BstAUI	TGTACA	1 cut(s)	692
BstC8I	GCNNGC	6 cut(s)	27, 358, 810, 814, 1296, 1332
BstDSI	CCRYGG	2 cut(s)	551, 1139
BstF5I	GGATG	5 cut(s)	235, 562, 721, 966, 1150
BstFNI	CGCG	1 cut(s)	1141
BstKTI	GATC	6 cut(s)	19, 117, 305, 507, 737, 767
BstMAI	GTCTC	1 cut(s)	1089
BstMBI	GATC	6 cut(s)	16, 114, 302, 504, 734, 764
BstMWI	GCNNNNNNNGC	5 cut(s)	240, 325, 832, 948, 1427
BstNI	CCWGG	2 cut(s)	546, 840
BstNSI	RCATGY	3 cut(s)	447, 816, 1390
BstSCI	CCNGG	5 cut(s)	544, 838, 984, 1018, 1242
BstSFI	CTRYAG	1 cut(s)	1361
BstSLI	GKGCMC	2 cut(s)	187, 1117
BstUI	CGCG	1 cut(s)	1141
BstV1I	GCAGC	7 cut(s)	60, 553, 817, 909, 1270, 1297, 1461
BstX2I	RGATCY	2 cut(s)	16, 504
BstYI	RGATCY	2 cut(s)	16, 504
BsuRI	GGCC	6 cut(s)	279, 421, 951, 1023, 1138, 1242
BtgI	CCRYGG	2 cut(s)	551, 1139
BtsCI	GGATG	5 cut(s)	235, 562, 721, 966, 1150
BtsIMutI	CAGTG	3 cut(s)	533, 575, 1223
Cac8I	GCNNGC	6 cut(s)	27, 358, 810, 814, 1296, 1332
Cfr13I	GGNCC	4 cut(s)	277, 548, 950, 1136
Cfr42I	CCGCGG	1 cut(s)	1142
Csp6I	GTAC	2 cut(s)	126, 693
CspCI	CAANNNNNGTGG	2 cut(s)	117, 152
CviAII	CATG	7 cut(s)	299, 320, 417, 444, 813, 970, 1387
CviQI	GTAC	2 cut(s)	126, 693
DpnI	GATC	6 cut(s)	18, 116, 304, 506, 736, 766
DpnII	GATC	6 cut(s)	16, 114, 302, 504, 734, 764
DraIII	CACNNNGTG	1 cut(s)	1304
EaeI	YGGCCR	1 cut(s)	1021
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	548
Eco57I	CTGAAG	3 cut(s)	89, 435, 557
EcoRII	CCWGG	2 cut(s)	544, 838
EcoT22I	ATGCAT	2 cut(s)	966, 978
FaeI	CATG	7 cut(s)	302, 323, 420, 447, 816, 973, 1390
FalI	AAGNNNNNCTT	4 cut(s)	730, 762, 1057, 1089
FaqI	GGGAC	3 cut(s)	862, 872, 1001
FatI	CATG	7 cut(s)	298, 319, 416, 443, 812, 969, 1386
FauI	CCCGC	4 cut(s)	333, 503, 1049, 1134
Fnu4HI	GCNGC	8 cut(s)	49, 542, 806, 898, 1139, 1284, 1311, 1450
FokI	GGATG	5 cut(s)	242, 569, 728, 973, 1157
Fsp4HI	GCNGC	8 cut(s)	49, 542, 806, 898, 1139, 1284, 1311, 1450
FspBI	CTAG	4 cut(s)	249, 357, 638, 1049
GluI	GCNGC	8 cut(s)	49, 542, 806, 898, 1139, 1284, 1311, 1450
GsaI	CCCAGC	1 cut(s)	87
HaeIII	GGCC	6 cut(s)	279, 421, 951, 1023, 1138, 1242
HapII	CCGG	5 cut(s)	268, 986, 1020, 1028, 1243
Hin1II	CATG	7 cut(s)	302, 323, 420, 447, 816, 973, 1390
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	4 cut(s)	496, 561, 676, 1055
HpaII	CCGG	5 cut(s)	268, 986, 1020, 1028, 1243
Hpy166II	GTNNAC	5 cut(s)	185, 551, 861, 1115, 1392
Hpy188I	TCNGA	8 cut(s)	77, 147, 342, 823, 1064, 1126, 1238, 1446
Hpy188III	TCNNGA	8 cut(s)	218, 249, 391, 426, 500, 732, 998, 1088
Hpy8I	GTNNAC	5 cut(s)	185, 551, 861, 1115, 1392
Hpy99I	CGWCG	1 cut(s)	684
HpyAV	CCTTC	4 cut(s)	151, 432, 668, 951
HpyCH4III	ACNGT	5 cut(s)	347, 1015, 1119, 1218, 1252
HpyCH4IV	ACGT	1 cut(s)	435
HpyF10VI	GCNNNNNNNGC	5 cut(s)	240, 325, 832, 948, 1427
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	7 cut(s)	302, 323, 420, 447, 816, 973, 1390
KspI	CCGCGG	1 cut(s)	1142
Kzo9I	GATC	6 cut(s)	16, 114, 302, 504, 734, 764
LmnI	GCTCC	2 cut(s)	45, 1049
Lsp1109I	GCAGC	7 cut(s)	60, 553, 817, 909, 1270, 1297, 1461
LweI	GCATC	3 cut(s)	706, 951, 963
MaeI	CTAG	4 cut(s)	249, 357, 638, 1049
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	1246
MalI	GATC	6 cut(s)	18, 116, 304, 506, 736, 766
MbiI	CCGCTC	1 cut(s)	1044
MboI	GATC	6 cut(s)	16, 114, 302, 504, 734, 764
MboII	GAAGA	3 cut(s)	413, 984, 1064
MflI	RGATCY	2 cut(s)	16, 504
MhlI	GDGCHC	3 cut(s)	187, 416, 1117
MluCI	AATT	8 cut(s)	9, 169, 486, 785, 1211, 1287, 1437, 1463
MlyI	GAGTC	3 cut(s)	505, 555, 670
MnlI	CCTC	9 cut(s)	141, 281, 339, 371, 387, 666, 1001, 1147, 1232
Mph1103I	ATGCAT	2 cut(s)	966, 978
MseI	TTAA	4 cut(s)	308, 492, 579, 1263
MspA1I	CMGCKG	2 cut(s)	67, 1141
MspI	CCGG	5 cut(s)	268, 986, 1020, 1028, 1243
MspR9I	CCNGG	5 cut(s)	546, 840, 986, 1020, 1244
Mva1269I	GAATGC	1 cut(s)	976
MvaI	CCWGG	2 cut(s)	546, 840
MvnI	CGCG	1 cut(s)	1141
MwoI	GCNNNNNNNGC	5 cut(s)	240, 325, 832, 948, 1427
NciI	CCSGG	3 cut(s)	986, 1020, 1244
NdeII	GATC	6 cut(s)	16, 114, 302, 504, 734, 764
NheI	GCTAGC	1 cut(s)	356
NlaIII	CATG	7 cut(s)	302, 323, 420, 447, 816, 973, 1390
NlaIV	GGNNCC	1 cut(s)	1226
NsiI	ATGCAT	2 cut(s)	966, 978
NspI	RCATGY	3 cut(s)	447, 816, 1390
PaeI	GCATGC	1 cut(s)	816
PciI	ACATGT	1 cut(s)	1386
PcsI	WCGNNNNNNNCGW	2 cut(s)	850, 952
PctI	GAATGC	1 cut(s)	976
PfeI	GAWTC	1 cut(s)	1055
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	8 cut(s)	50, 543, 807, 899, 1140, 1285, 1312, 1451
PleI	GAGTC	3 cut(s)	504, 555, 670
PpsI	GAGTC	3 cut(s)	504, 555, 670
PscI	ACATGT	1 cut(s)	1386
Psp6I	CCWGG	2 cut(s)	544, 838
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	2 cut(s)	544, 838
PspN4I	GGNNCC	1 cut(s)	1226
PspPI	GGNCC	4 cut(s)	277, 548, 950, 1136
PsrI	GAACNNNNNNTAC	2 cut(s)	676, 708
PstI	CTGCAG	1 cut(s)	1365
PsuI	RGATCY	2 cut(s)	16, 504
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	2 cut(s)	127, 694
RsaNI	GTAC	2 cut(s)	126, 693
SacII	CCGCGG	1 cut(s)	1142
SaqAI	TTAA	4 cut(s)	308, 492, 579, 1263
SatI	GCNGC	8 cut(s)	49, 542, 806, 898, 1139, 1284, 1311, 1450
Sau3AI	GATC	6 cut(s)	16, 114, 302, 504, 734, 764
Sau96I	GGNCC	4 cut(s)	277, 548, 950, 1136
SchI	GAGTC	3 cut(s)	505, 555, 670
ScrFI	CCNGG	5 cut(s)	546, 840, 986, 1020, 1244
SduI	GDGCHC	3 cut(s)	187, 416, 1117
SfaNI	GCATC	3 cut(s)	706, 951, 963
SfcI	CTRYAG	1 cut(s)	1361
Sfr303I	CCGCGG	1 cut(s)	1142
SgrBI	CCGCGG	1 cut(s)	1142
SinI	GGWCC	1 cut(s)	548
SphI	GCATGC	1 cut(s)	816
Sse9I	AATT	8 cut(s)	9, 169, 486, 785, 1211, 1287, 1437, 1463
SsiI	CCGC	5 cut(s)	326, 510, 1042, 1139, 1141
SspMI	CTAG	4 cut(s)	249, 357, 638, 1049
StyD4I	CCNGG	5 cut(s)	544, 838, 984, 1018, 1242
TaaI	ACNGT	5 cut(s)	347, 1015, 1119, 1218, 1252
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	3 cut(s)	427, 679, 1089
TasI	AATT	8 cut(s)	9, 169, 486, 785, 1211, 1287, 1437, 1463
TatI	WGTACW	1 cut(s)	692
TauI	GCSGC	1 cut(s)	1141
TfiI	GAWTC	1 cut(s)	1055
Tru1I	TTAA	4 cut(s)	308, 492, 579, 1263
Tru9I	TTAA	4 cut(s)	308, 492, 579, 1263
TscAI	CASTG	3 cut(s)	540, 575, 1223
TseI	GCWGC	7 cut(s)	48, 541, 805, 897, 1283, 1310, 1449
TspDTI	ATGAA	3 cut(s)	565, 778, 1047
TspGWI	ACGGA	2 cut(s)	194, 859
TspRI	CASTG	3 cut(s)	540, 575, 1223
Van91I	CCANNNNNTGG	1 cut(s)	557
VneI	GTGCAC	2 cut(s)	183, 1113
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	2 cut(s)	9, 785
XbaI	TCTAGA	1 cut(s)	248
XceI	RCATGY	3 cut(s)	447, 816, 1390
XspI	CTAG	4 cut(s)	249, 357, 638, 1049
Zsp2I	ATGCAT	2 cut(s)	966, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.