Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015637

Physical Location & Seq

Genomic Coordinates Forward (+)

22237738 .. 22239049

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g31340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCAAAGAAAGGAGAAAAGCAACCCCAGGCACCGAAACGGAAACGAAATTCCCGCACAAAAGAAGAAGCAGATGATTCTTTTGTATCTTTATCAACTATGGAAATTGATCACTACAAAATACTTGAAGTGGATCGCAACGCGAGCCCGGATGAGTTGAGGACATCATACAAGAGCTTGGTCATGGTTTGGCACCCGGACAAACACTTGCAGGAGAAAACTCGAGCCGAGGCCGAGACCAAGTTCAAGAAAATCAACGAGGCCTACCAGATTCTGAACGACCCTGAGAAGCGACAGAAGTACGATCGTCACCATGCAAATATAGCCAACTCCAAGAGGACGGAGTCTTCATTCTGGTTGCCTCCTCGTGAGGATAATAATGCTTTTGCCACGATGTTTGGATCTGGTGGTTGGAAGAGGCCAGATTCAACAGTCTCAACAGTATATAGTCCATTGATTTGTAGCTTGGAGGAGCTTTATCAGGGTACGACAAAGAAGATGAAGCTGACGAGAGCCGTAACAAATGGCTCGGGGGAGGAGACTACGGTGGGGGAGATTTTGCAGGTAAACATAAAACCTGGTTACAGGGCCGGCACCAAGATGACCTACAACGGTGGAGATCTTGGTTTTGTCATCCAAGAGAAACAACATTCCGTTTACGAGAGGGATAGGAATGATCTCATAGTCCACCAAGAGATAACATTGTTGGAGGCACTCATCGGCGGTAAGACTCTTGATCTGACCACCCTAGATGGAAGGAAGCTCGTGGTGCCGTTACCCGATGATGTCATTAGAGCTCCTGGGGATGAGATGATTGTACCAGGTGAGGGAATGCCAATCTCAAGCCAACCTGGGGCGAAAGGAAACTTGAGGATCAAGTTCAATGTCAAGTTTCCTTCGAGCAGCTTCACTGCAGAACAGAAGTTGGATTTGAAAAAAGGCTTCGAAGGAGTTTCGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

321

Amino Acids

36.06

Weight (kDa)

8.84

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	37 - 102	5.7e-23	DnaJ domain
DnaJ_C	PF01556	152 - 299	4.1e-27	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31340
rosa_chinensis	RchiOBHm_Chr7g0226561
rosa_laevigata	RLG00000001715 RLG00000001717
rosa_multiflora	Rmu_sc0001423.1_g000007 Rmu_sc0001423.1_g000017
rosa_roxburghii	Rroxscaffold_3G00232700
rosa_rugosa	Rorug07G0238400
rosa_samantha	Rh7AG385600 Rh7AG385900 Rh7BG372400 Rh7BG372600 Rh7CG404800 Rh7CG405200 Rh7DG384600
rosa_wichuraiana	Rw7G032400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	553
AccB1I	GGYRCC	4 cut(s)	31, 192, 593, 769
AccII	CGCG	1 cut(s)	143
AciI	CCGC	2 cut(s)	55, 723
AclWI	GGATC	3 cut(s)	141, 409, 881
AcsI	RAATTY	1 cut(s)	49
AfaI	GTAC	3 cut(s)	302, 487, 819
AfiI	CCNNNNNNNGG	2 cut(s)	827, 853
AgsI	TTSAA	5 cut(s)	128, 247, 429, 883, 934
AjnI	CCWGG	5 cut(s)	27, 577, 799, 820, 850
AluBI	AGCT	7 cut(s)	177, 465, 475, 505, 763, 797, 906
AluI	AGCT	7 cut(s)	177, 465, 475, 505, 763, 797, 906
Alw21I	GWGCWC	1 cut(s)	799
Alw26I	GTCTC	3 cut(s)	230, 439, 533
AlwI	GGATC	3 cut(s)	141, 409, 881
AlwNI	CAGNNNCTG	1 cut(s)	274
Ama87I	CYCGRG	2 cut(s)	222, 529
AoxI	GGCC	4 cut(s)	231, 261, 419, 588
ApeKI	GCWGC	1 cut(s)	903
ApoI	RAATTY	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	588
AsuC2I	CCSGG	2 cut(s)	149, 197
AsuHPI	GGTGA	2 cut(s)	302, 836
AsuII	TTCGAA	1 cut(s)	945
AvaI	CYCGRG	2 cut(s)	222, 529
BanI	GGYRCC	4 cut(s)	31, 192, 593, 769
BanII	GRGCYC	2 cut(s)	149, 799
BauI	CACGAG	2 cut(s)	366, 764
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	799
BbvI	GCAGC	1 cut(s)	915
BccI	CCATC	1 cut(s)	746
BceAI	ACGGC	2 cut(s)	500, 757
BciT130I	CCWGG	5 cut(s)	29, 579, 801, 822, 852
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	149, 197
BcoDI	GTCTC	3 cut(s)	230, 439, 533
BfaI	CTAG	1 cut(s)	749
BfmI	CTRYAG	1 cut(s)	912
BfuAI	ACCTGC	1 cut(s)	553
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	1 cut(s)	904
BlsI	GCNGC	1 cut(s)	905
Bme1390I	CCNGG	7 cut(s)	29, 149, 197, 579, 801, 822, 852
BmeT110I	CYCGRG	2 cut(s)	222, 529
BmgT120I	GGNCC	1 cut(s)	588
BmiI	GGNNCC	4 cut(s)	33, 194, 595, 771
BmrFI	CCNGG	7 cut(s)	29, 149, 197, 579, 801, 822, 852
BpiI	GAAGAC	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	945
BpuEI	CTTGAG	2 cut(s)	826, 889
BpuMI	CCSGG	2 cut(s)	149, 197
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	4 cut(s)	27, 228, 800, 851
Bsc4I	CCNNNNNNNGG	2 cut(s)	827, 853
Bse118I	RCCGGY	1 cut(s)	590
BseBI	CCWGG	5 cut(s)	29, 579, 801, 822, 852
BseDI	CCNNGG	4 cut(s)	27, 228, 800, 851
BseGI	GGATG	3 cut(s)	157, 633, 811
BseLI	CCNNNNNNNGG	2 cut(s)	827, 853
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	3 cut(s)	354, 485, 551
BseXI	GCAGC	1 cut(s)	915
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	4 cut(s)	233, 263, 421, 590
BshNI	GGYRCC	4 cut(s)	31, 192, 593, 769
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	799
BsiHKCI	CYCGRG	2 cut(s)	222, 529
BsiSI	CCGG	3 cut(s)	149, 197, 591
BslI	CCNNNNNNNGG	2 cut(s)	827, 853
BsmAI	GTCTC	3 cut(s)	230, 439, 533
BsmI	GAATGC	1 cut(s)	837
BsnI	GGCC	4 cut(s)	233, 263, 421, 590
Bso31I	GGTCTC	1 cut(s)	230
BsoBI	CYCGRG	2 cut(s)	222, 529
Bsp119I	TTCGAA	1 cut(s)	945
Bsp1286I	GDGCHC	2 cut(s)	149, 799
Bsp143I	GATC	8 cut(s)	109, 133, 304, 401, 619, 676, 736, 873
BspACI	CCGC	2 cut(s)	55, 723
BspANI	GGCC	4 cut(s)	233, 263, 421, 590
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	4 cut(s)	33, 194, 595, 771
BspMAI	CTGCAG	1 cut(s)	916
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	3 cut(s)	141, 409, 881
BspT104I	TTCGAA	1 cut(s)	945
BspT107I	GGYRCC	4 cut(s)	31, 192, 593, 769
BspTNI	GGTCTC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	590
BssAI	RCCGGY	1 cut(s)	590
BssECI	CCNNGG	4 cut(s)	27, 228, 800, 851
BssMI	GATC	8 cut(s)	109, 133, 304, 401, 619, 676, 736, 873
BssSI	CACGAG	2 cut(s)	366, 764
Bst2BI	CACGAG	2 cut(s)	366, 764
Bst2UI	CCWGG	5 cut(s)	29, 579, 801, 822, 852
Bst4CI	ACNGT	4 cut(s)	433, 442, 547, 614
Bst6I	CTCTTC	1 cut(s)	410
BstBI	TTCGAA	1 cut(s)	945
BstC8I	GCNNGC	2 cut(s)	145, 592
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	3 cut(s)	157, 633, 811
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	8 cut(s)	112, 136, 307, 404, 622, 679, 739, 876
BstMAI	GTCTC	3 cut(s)	230, 439, 533
BstMBI	GATC	8 cut(s)	109, 133, 304, 401, 619, 676, 736, 873
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 323, 769
BstNI	CCWGG	5 cut(s)	29, 579, 801, 822, 852
BstSCI	CCNGG	7 cut(s)	27, 147, 195, 577, 799, 820, 850
BstSFI	CTRYAG	1 cut(s)	912
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	915
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	2 cut(s)	401, 619
BstYI	RGATCY	2 cut(s)	401, 619
BsuRI	GGCC	4 cut(s)	233, 263, 421, 590
BtsCI	GGATG	3 cut(s)	157, 633, 811
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	1 cut(s)	909
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	2 cut(s)	145, 592
CaiI	CAGNNNCTG	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	588
CsiI	ACCWGGT	2 cut(s)	577, 820
Csp6I	GTAC	3 cut(s)	301, 486, 818
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	2 cut(s)	184, 314
CviQI	GTAC	3 cut(s)	301, 486, 818
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	8 cut(s)	111, 135, 306, 403, 621, 678, 738, 875
DpnII	GATC	8 cut(s)	109, 133, 304, 401, 619, 676, 736, 873
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
Ecl136II	GAGCTC	1 cut(s)	797
Eco147I	AGGCCT	1 cut(s)	263
Eco24I	GRGCYC	2 cut(s)	149, 799
Eco31I	GGTCTC	1 cut(s)	230
Eco53kI	GAGCTC	1 cut(s)	797
Eco88I	CYCGRG	2 cut(s)	222, 529
EcoICRI	GAGCTC	1 cut(s)	797
EcoRII	CCWGG	5 cut(s)	27, 577, 799, 820, 850
EcoT38I	GRGCYC	2 cut(s)	149, 799
FaeI	CATG	2 cut(s)	187, 317
FaiI	YATR	9 cut(s)	101, 169, 185, 315, 323, 445, 447, 572, 683
FatI	CATG	2 cut(s)	183, 313
FauI	CCCGC	1 cut(s)	62
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	904
FokI	GGATG	3 cut(s)	164, 620, 818
FriOI	GRGCYC	2 cut(s)	149, 799
Fsp4HI	GCNGC	1 cut(s)	904
FspBI	CTAG	1 cut(s)	749
GluI	GCNGC	1 cut(s)	904
HaeIII	GGCC	4 cut(s)	233, 263, 421, 590
HapII	CCGG	3 cut(s)	149, 197, 591
Hin1II	CATG	2 cut(s)	187, 317
HinfI	GANTC	5 cut(s)	77, 271, 344, 425, 730
HpaII	CCGG	3 cut(s)	149, 197, 591
HphI	GGTGA	2 cut(s)	302, 836
Hpy166II	GTNNAC	3 cut(s)	568, 658, 688
Hpy188I	TCNGA	3 cut(s)	276, 741, 962
Hpy188III	TCNNGA	3 cut(s)	247, 368, 734
Hpy8I	GTNNAC	3 cut(s)	568, 658, 688
HpyAV	CCTTC	3 cut(s)	750, 906, 941
HpyCH4III	ACNGT	4 cut(s)	433, 442, 547, 614
HpyCH4V	TGCA	4 cut(s)	211, 317, 562, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 323, 769
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	187, 317
KroI	GCCGGC	1 cut(s)	590
KroNI	GCCGGC	1 cut(s)	592
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	8 cut(s)	109, 133, 304, 401, 619, 676, 736, 873
LmnI	GCTCC	2 cut(s)	472, 802
Lsp1109I	GCAGC	1 cut(s)	915
MabI	ACCWGGT	2 cut(s)	577, 820
MaeI	CTAG	1 cut(s)	749
MaeIII	GTNAC	4 cut(s)	308, 517, 581, 774
MalI	GATC	8 cut(s)	111, 135, 306, 403, 621, 678, 738, 875
MboI	GATC	8 cut(s)	109, 133, 304, 401, 619, 676, 736, 873
MboII	GAAGA	4 cut(s)	77, 339, 427, 508
MflI	RGATCY	2 cut(s)	401, 619
MhlI	GDGCHC	2 cut(s)	149, 799
MluCI	AATT	2 cut(s)	49, 105
MlyI	GAGTC	2 cut(s)	353, 724
MmeI	TCCRAC	3 cut(s)	392, 687, 906
MroNI	GCCGGC	1 cut(s)	590
MslI	CAYNNNNRTG	1 cut(s)	599
MspI	CCGG	3 cut(s)	149, 197, 591
MspR9I	CCNGG	7 cut(s)	29, 149, 197, 579, 801, 822, 852
Mva1269I	GAATGC	1 cut(s)	837
MvaI	CCWGG	5 cut(s)	29, 579, 801, 822, 852
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	3 cut(s)	144, 323, 769
NaeI	GCCGGC	1 cut(s)	592
NciI	CCSGG	2 cut(s)	149, 197
NdeII	GATC	8 cut(s)	109, 133, 304, 401, 619, 676, 736, 873
NgoMIV	GCCGGC	1 cut(s)	590
NlaIII	CATG	2 cut(s)	187, 317
NlaIV	GGNNCC	4 cut(s)	33, 194, 595, 771
NmeAIII	GCCGAG	2 cut(s)	253, 259
NmuCI	GTSAC	1 cut(s)	308
NspV	TTCGAA	1 cut(s)	945
PaeR7I	CTCGAG	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	263
PctI	GAATGC	1 cut(s)	837
PdiI	GCCGGC	1 cut(s)	592
PfeI	GAWTC	3 cut(s)	77, 271, 425
PflFI	GACNNNGTC	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	905
Ple19I	CGATCG	1 cut(s)	307
PleI	GAGTC	2 cut(s)	352, 724
PpsI	GAGTC	2 cut(s)	352, 724
Psp124BI	GAGCTC	1 cut(s)	799
Psp6I	CCWGG	5 cut(s)	27, 577, 799, 820, 850
PspGI	CCWGG	5 cut(s)	27, 577, 799, 820, 850
PspN4I	GGNNCC	4 cut(s)	33, 194, 595, 771
PspPI	GGNCC	1 cut(s)	588
PspXI	VCTCGAGB	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	916
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	401, 619
PsyI	GACNNNGTC	1 cut(s)	343
PvuI	CGATCG	1 cut(s)	307
RsaI	GTAC	3 cut(s)	302, 487, 819
RsaNI	GTAC	3 cut(s)	301, 486, 818
RseI	CAYNNNNRTG	1 cut(s)	599
SacI	GAGCTC	1 cut(s)	799
SatI	GCNGC	1 cut(s)	904
Sau3AI	GATC	8 cut(s)	109, 133, 304, 401, 619, 676, 736, 873
Sau96I	GGNCC	1 cut(s)	588
SchI	GAGTC	2 cut(s)	353, 724
ScrFI	CCNGG	7 cut(s)	29, 149, 197, 579, 801, 822, 852
SduI	GDGCHC	2 cut(s)	149, 799
SexAI	ACCWGGT	2 cut(s)	577, 820
SfcI	CTRYAG	1 cut(s)	912
Sfr274I	CTCGAG	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	945
SlaI	CTCGAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	3 cut(s)	222, 841, 868
SmoI	CTYRAG	3 cut(s)	222, 841, 868
Sse9I	AATT	2 cut(s)	49, 105
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	2 cut(s)	55, 723
SspMI	CTAG	1 cut(s)	749
SstI	GAGCTC	1 cut(s)	799
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	7 cut(s)	27, 147, 195, 577, 799, 820, 850
TaaI	ACNGT	4 cut(s)	433, 442, 547, 614
TaqI	TCGA	3 cut(s)	223, 899, 945
TasI	AATT	2 cut(s)	49, 105
TfiI	GAWTC	3 cut(s)	77, 271, 425
TscAI	CASTG	1 cut(s)	916
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	1 cut(s)	903
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	339, 515
TspGWI	ACGGA	3 cut(s)	55, 356, 643
TspRI	CASTG	1 cut(s)	916
Tth111I	GACNNNGTC	1 cut(s)	343
XapI	RAATTY	1 cut(s)	49
XhoI	CTCGAG	1 cut(s)	222
XspI	CTAG	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.