RLG00000001715

DnaJ homolog subfamily B member

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
19503934 .. 19507562
3629 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001715

Sequence Viewer

Length: 1257 bp
ATGGCGAAGAAAGGAGAAAAGCAACCCCAGGCACCGAAACGAAAACGAAATCCCCGCACAAAAGAAAAACCAGATGCTTCTTTTATATCTTCCACTACTATGGAAATTGATCACTACAAAATACTTGGAGTGAATCGCAACGCGAGCCCGGATGAGGTGAAGAAAGCATACAGGAAACTGGTCATGTTTTGGCACCCTGACAAACACTTGCAGGAAGAAGCTCGAGCTGAGGCCGAGGCCAAGTTCAAGGAAATCAACCAGGCTTACCAGATTCTCAACGACCCTGTGAAACGACACAACTACGATAGTCAGCATGCAAATATAGCCAACTCCAATAGGACGGCATCGTCATTTTGGTTTCCTCCTAGTGATGATGAAAATACTTTTGCTACCATGTTTGGATTTGGTAGTCGGAGGACAGATTCAATGGTATACAGTCCATTGGAGTGCAGCTTGGAGGAGCTTTATCAGGGTACTACGAAGAAGATGAAGGTGACGAGAGCAGTGACGAATGCTTTGGGGGAGGAGACTATGGTGGAGCAGCCTTTGACAGTCAACATAAAACCTGGTTTCCGGCACGGCACCAAGATAACTTACAAGGTGGAAGCTAATACGGCCGATGTAGGTTTTATCATCAAAGAGAAACAACATTCCGTGTACGAGAGGCATGGGAATGATCTCATAGTCCACCAGGAGATAACACTGCTGGAGGCGCTCACCGGCGGTAGGACTCTTGATCTGACCGCCCTGGATGGAAGGAAGCTCATGGTCCCGTTACCCGATGATGTCATCAGAGCTCCTGGGGATGAAATGGTTGTACCAGGTGAAGGAATGCCAATCTCAAGCCAACCTGGGGTAAAAGGAAACTTGAGGATCAAGTTCAATGTCAAGTTTCCTTCGAGCAGCCTCACTGCAGAACAGAAATTGGATCTGAAAAGAGCTGGATCGTCGTCCACCTCGTTCCATCCCCGCCTCGTAGAGGAAAAACGTCACCCTCTCCAATCATTCCCTTCCCCATGCCGGAATCAAAAGCCCAGACGCAGATCGAAAAATTCCGATCGGATCCAACCCATATCGGGTCAGATTGCGCTGAGCCAAGCAACGTCACGACGATCCCATCAACTCCAGTCCACCCCCGAACCCGCGACCCCACTCTACGCCGCCGACAGCCCTGAACTCGACGCGGACCAGATCATTGACGCCGGTGGCAAACTGTTGATGGTGGAGTCGGACTCTACGACGGATCGAAGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

419

Amino Acids

46.92

Weight (kDa)

9.27

Isoelectric Point (pI)

58.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 37 - 102 3.2e-25 DnaJ domain
DnaJ_C PF01556 147 - 299 2.8e-30 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 346
AccB1I GGYRCC 3 cut(s) 31, 192, 581
AccI GTMKAC 1 cut(s) 432
AccII CGCG 3 cut(s) 143, 1145, 1184
AciI CCGC 7 cut(s) 55, 723, 744, 970, 1143, 1161, 1184
AclWI GGATC 7 cut(s) 881, 936, 952, 1057, 1070, 1107, 1251
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 1 cut(s) 1051
AcyI GRCGYC 1 cut(s) 1200
AfaI GTAC 3 cut(s) 475, 659, 819
AfiI CCNNNNNNNGG 7 cut(s) 154, 726, 827, 853, 979, 1020, 1076
AgsI TTSAA 3 cut(s) 247, 426, 883
AjnI CCWGG 8 cut(s) 27, 258, 565, 690, 747, 799, 820, 850
AluBI AGCT 8 cut(s) 221, 227, 453, 463, 608, 763, 797, 941
AluI AGCT 8 cut(s) 221, 227, 453, 463, 608, 763, 797, 941
Alw21I GWGCWC 1 cut(s) 799
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 7 cut(s) 881, 936, 952, 1057, 1070, 1107, 1251
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 3 cut(s) 231, 237, 615
ApeKI GCWGC 3 cut(s) 450, 541, 903
ApoI RAATTY 1 cut(s) 1051
ArsI GACNNNNNNTTYG 2 cut(s) 499, 531
AspLEI GCGC 2 cut(s) 715, 1090
AspS9I GGNCC 2 cut(s) 769, 1186
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 5 cut(s) 169, 505, 709, 836, 983
AvaI CYCGRG 1 cut(s) 222
AvaII GGWCC 2 cut(s) 769, 1186
BamHI GGATCC 1 cut(s) 1062
BanI GGYRCC 3 cut(s) 31, 192, 581
BanII GRGCYC 2 cut(s) 149, 799
BarI GAAGNNNNNNTAC 2 cut(s) 152, 184
Bbv12I GWGCWC 1 cut(s) 799
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 3 cut(s) 462, 553, 915
BccI CCATC 4 cut(s) 746, 972, 1125, 1213
BceAI ACGGC 3 cut(s) 357, 595, 630
BciT130I CCWGG 8 cut(s) 29, 260, 567, 692, 749, 801, 822, 852
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 521
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 912
BfoI RGCGCY 1 cut(s) 716
BisI GCNGC 4 cut(s) 451, 542, 904, 1161
BlpI GCTNAGC 1 cut(s) 1091
BlsI GCNGC 4 cut(s) 452, 543, 905, 1162
Bme1390I CCNGG 9 cut(s) 29, 149, 260, 567, 692, 749, 801, 822, 852
Bme18I GGWCC 2 cut(s) 769, 1186
BmeT110I CYCGRG 1 cut(s) 222
BmgT120I GGNCC 2 cut(s) 769, 1186
BmiI GGNNCC 5 cut(s) 33, 194, 583, 771, 1064
BmrFI CCNGG 9 cut(s) 29, 149, 260, 567, 692, 749, 801, 822, 852
BmsI GCATC 2 cut(s) 64, 353
BplI GAGNNNNNCTC 2 cut(s) 1217, 1249
BpmI CTGGAG 2 cut(s) 728, 1109
Bpu10I CCTNAGC 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 1091
BpuEI CTTGAG 2 cut(s) 826, 889
BpuMI CCSGG 1 cut(s) 149
BsaHI GRCGYC 1 cut(s) 1200
BsaJI CCNNGG 5 cut(s) 27, 234, 747, 800, 851
Bsc4I CCNNNNNNNGG 7 cut(s) 154, 726, 827, 853, 979, 1020, 1076
Bse118I RCCGGY 2 cut(s) 719, 1202
Bse1I ACTGG 2 cut(s) 183, 1126
BseBI CCWGG 8 cut(s) 29, 260, 567, 692, 749, 801, 822, 852
BseDI CCNNGG 5 cut(s) 27, 234, 747, 800, 851
BseGI GGATG 4 cut(s) 157, 757, 811, 964
BseLI CCNNNNNNNGG 7 cut(s) 154, 726, 827, 853, 979, 1020, 1076
BseMII CTCAG 2 cut(s) 219, 1082
BseNI ACTGG 2 cut(s) 183, 1126
BseRI GAGGAG 2 cut(s) 473, 539
BseX3I CGGCCG 1 cut(s) 615
BseXI GCAGC 3 cut(s) 462, 553, 915
BsgI GTGCAG 1 cut(s) 469
Bsh1236I CGCG 3 cut(s) 143, 1145, 1184
Bsh1285I CGRYCG 2 cut(s) 618, 1060
BshFI GGCC 3 cut(s) 233, 239, 617
BshNI GGYRCC 3 cut(s) 31, 192, 581
BsiEI CGRYCG 2 cut(s) 618, 1060
BsiHKAI GWGCWC 1 cut(s) 799
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 5 cut(s) 149, 574, 720, 1021, 1203
BslFI GGGAC 1 cut(s) 755
BslI CCNNNNNNNGG 7 cut(s) 154, 726, 827, 853, 979, 1020, 1076
BsmAI GTCTC 1 cut(s) 521
BsmFI GGGAC 1 cut(s) 755
BsmI GAATGC 2 cut(s) 517, 837
BsnI GGCC 3 cut(s) 233, 239, 617
BsoBI CYCGRG 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 149, 799
Bsp1720I GCTNAGC 1 cut(s) 1091
BspACI CCGC 7 cut(s) 55, 723, 744, 970, 1143, 1161, 1184
BspANI GGCC 3 cut(s) 233, 239, 617
BspCNI CTCAG 2 cut(s) 220, 1083
BspFNI CGCG 3 cut(s) 143, 1145, 1184
BspLI GGNNCC 5 cut(s) 33, 194, 583, 771, 1064
BspMAI CTGCAG 1 cut(s) 916
BspPI GGATC 7 cut(s) 881, 936, 952, 1057, 1070, 1107, 1251
BspT107I GGYRCC 3 cut(s) 31, 192, 581
BsrFI RCCGGY 2 cut(s) 719, 1202
BsrI ACTGG 2 cut(s) 183, 1126
BssAI RCCGGY 2 cut(s) 719, 1202
BssECI CCNNGG 5 cut(s) 27, 234, 747, 800, 851
BssNAI GTATAC 1 cut(s) 433
BssNI GRCGYC 1 cut(s) 1200
Bst1107I GTATAC 1 cut(s) 433
Bst2UI CCWGG 8 cut(s) 29, 260, 567, 692, 749, 801, 822, 852
Bst4CI ACNGT 3 cut(s) 437, 553, 1215
BstACI GRCGYC 1 cut(s) 1200
BstC8I GCNNGC 2 cut(s) 145, 315
BstDEI CTNAG 2 cut(s) 228, 1091
BstENI CCTNNNNNAGG 1 cut(s) 977
BstF5I GGATG 4 cut(s) 157, 757, 811, 964
BstFNI CGCG 3 cut(s) 143, 1145, 1184
BstH2I RGCGCY 1 cut(s) 716
BstHHI GCGC 2 cut(s) 715, 1090
BstMAI GTCTC 1 cut(s) 521
BstMCI CGRYCG 2 cut(s) 618, 1060
BstMWI GCNNNNNNNGC 4 cut(s) 144, 323, 614, 712
BstNI CCWGG 8 cut(s) 29, 260, 567, 692, 749, 801, 822, 852
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 9 cut(s) 27, 147, 258, 565, 690, 747, 799, 820, 850
BstSFI CTRYAG 1 cut(s) 912
BstUI CGCG 3 cut(s) 143, 1145, 1184
BstV1I GCAGC 3 cut(s) 462, 553, 915
BstX2I RGATCY 2 cut(s) 928, 1062
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 2 cut(s) 928, 1062
BstZ17I GTATAC 1 cut(s) 433
BstZI CGGCCG 1 cut(s) 615
BsuRI GGCC 3 cut(s) 233, 239, 617
BtsCI GGATG 4 cut(s) 157, 757, 811, 964
BtsI GCAGTG 3 cut(s) 510, 701, 909
BtsIMutI CAGTG 3 cut(s) 510, 701, 909
Cac8I GCNNGC 2 cut(s) 145, 315
CfoI GCGC 2 cut(s) 715, 1090
Cfr10I RCCGGY 2 cut(s) 719, 1202
Cfr13I GGNCC 2 cut(s) 769, 1186
CseI GACGC 3 cut(s) 1047, 1190, 1208
CsiI ACCWGGT 2 cut(s) 565, 820
Csp6I GTAC 3 cut(s) 474, 658, 818
CviAII CATG 6 cut(s) 184, 314, 394, 668, 766, 1017
CviQI GTAC 3 cut(s) 474, 658, 818
DdeI CTNAG 2 cut(s) 228, 1091
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 615
EagI CGGCCG 1 cut(s) 615
Ecl136II GAGCTC 1 cut(s) 797
EclXI CGGCCG 1 cut(s) 615
Eco24I GRGCYC 2 cut(s) 149, 799
Eco47I GGWCC 2 cut(s) 769, 1186
Eco52I CGGCCG 1 cut(s) 615
Eco53kI GAGCTC 1 cut(s) 797
Eco88I CYCGRG 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 797
EcoNI CCTNNNNNAGG 1 cut(s) 977
EcoRII CCWGG 8 cut(s) 27, 258, 565, 690, 747, 799, 820, 850
EcoT38I GRGCYC 2 cut(s) 149, 799
FaeI CATG 6 cut(s) 187, 317, 397, 671, 769, 1020
FaqI GGGAC 1 cut(s) 755
FatI CATG 6 cut(s) 183, 313, 393, 667, 765, 1016
FauI CCCGC 3 cut(s) 62, 977, 1150
FbaI TGATCA 1 cut(s) 109
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 4 cut(s) 451, 542, 904, 1161
FokI GGATG 4 cut(s) 164, 764, 818, 951
FriOI GRGCYC 2 cut(s) 149, 799
Fsp4HI GCNGC 4 cut(s) 451, 542, 904, 1161
FspBI CTAG 1 cut(s) 366
GlaI GCGC 2 cut(s) 714, 1089
GluI GCNGC 4 cut(s) 451, 542, 904, 1161
GsuI CTGGAG 2 cut(s) 728, 1109
HaeII RGCGCY 1 cut(s) 716
HaeIII GGCC 3 cut(s) 233, 239, 617
HapII CCGG 5 cut(s) 149, 574, 720, 1021, 1203
HgaI GACGC 3 cut(s) 1047, 1190, 1208
HhaI GCGC 2 cut(s) 715, 1090
Hin1I GRCGYC 1 cut(s) 1200
Hin1II CATG 6 cut(s) 187, 317, 397, 671, 769, 1020
Hin6I GCGC 2 cut(s) 713, 1088
HinP1I GCGC 2 cut(s) 713, 1088
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 7 cut(s) 133, 271, 422, 730, 1024, 1226, 1232
HpaII CCGG 5 cut(s) 149, 574, 720, 1021, 1203
HphI GGTGA 5 cut(s) 169, 505, 709, 836, 983
Hpy166II GTNNAC 6 cut(s) 433, 556, 658, 688, 954, 1131
Hpy188I TCNGA 8 cut(s) 414, 741, 794, 933, 1057, 1062, 1083, 1231
Hpy188III TCNNGA 2 cut(s) 734, 1107
Hpy8I GTNNAC 6 cut(s) 433, 556, 658, 688, 954, 1131
Hpy99I CGWCG 4 cut(s) 952, 1113, 1184, 1243
HpyAV CCTTC 6 cut(s) 484, 750, 821, 906, 1020, 1242
HpyCH4III ACNGT 3 cut(s) 437, 553, 1215
HpyCH4IV ACGT 2 cut(s) 988, 1103
HpyCH4V TGCA 4 cut(s) 211, 317, 450, 914
HpyF10VI GCNNNNNNNGC 4 cut(s) 144, 323, 614, 712
HpyF3I CTNAG 2 cut(s) 228, 1091
HpySE526I ACGT 2 cut(s) 988, 1103
Hsp92I GRCGYC 1 cut(s) 1200
Hsp92II CATG 6 cut(s) 187, 317, 397, 671, 769, 1020
HspAI GCGC 2 cut(s) 713, 1088
Ksp22I TGATCA 1 cut(s) 109
LmnI GCTCC 3 cut(s) 460, 538, 802
Lsp1109I GCAGC 3 cut(s) 462, 553, 915
LweI GCATC 2 cut(s) 64, 353
MabI ACCWGGT 2 cut(s) 565, 820
MaeI CTAG 1 cut(s) 366
MaeII ACGT 2 cut(s) 988, 1103
MaeIII GTNAC 5 cut(s) 493, 505, 774, 989, 1104
MboII GAAGA 6 cut(s) 19, 81, 172, 227, 493, 496
MflI RGATCY 2 cut(s) 928, 1062
MhlI GDGCHC 2 cut(s) 149, 799
MluCI AATT 3 cut(s) 105, 923, 1051
MlyI GAGTC 3 cut(s) 724, 1226, 1235
MmeI TCCRAC 3 cut(s) 392, 1090, 1209
MslI CAYNNNNRTG 3 cut(s) 98, 445, 672
MspI CCGG 5 cut(s) 149, 574, 720, 1021, 1203
MspR9I CCNGG 9 cut(s) 29, 149, 260, 567, 692, 749, 801, 822, 852
Mva1269I GAATGC 2 cut(s) 517, 837
MvaI CCWGG 8 cut(s) 29, 260, 567, 692, 749, 801, 822, 852
MvnI CGCG 3 cut(s) 143, 1145, 1184
MwoI GCNNNNNNNGC 4 cut(s) 144, 323, 614, 712
NciI CCSGG 1 cut(s) 149
NlaIII CATG 6 cut(s) 187, 317, 397, 671, 769, 1020
NlaIV GGNNCC 5 cut(s) 33, 194, 583, 771, 1064
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 4 cut(s) 493, 505, 989, 1104
NspI RCATGY 1 cut(s) 317
PaeI GCATGC 1 cut(s) 317
PaeR7I CTCGAG 1 cut(s) 222
PcsI WCGNNNNNNNCGW 2 cut(s) 956, 1235
PctI GAATGC 2 cut(s) 517, 837
PfeI GAWTC 4 cut(s) 133, 271, 422, 1024
PkrI GCNGC 4 cut(s) 452, 543, 905, 1162
Ple19I CGATCG 1 cut(s) 1060
PleI GAGTC 3 cut(s) 724, 1226, 1234
PpsI GAGTC 3 cut(s) 724, 1226, 1234
Psp124BI GAGCTC 1 cut(s) 799
Psp6I CCWGG 8 cut(s) 27, 258, 565, 690, 747, 799, 820, 850
PspGI CCWGG 8 cut(s) 27, 258, 565, 690, 747, 799, 820, 850
PspN4I GGNNCC 5 cut(s) 33, 194, 583, 771, 1064
PspPI GGNCC 2 cut(s) 769, 1186
PspXI VCTCGAGB 1 cut(s) 222
PstI CTGCAG 1 cut(s) 916
PsuI RGATCY 2 cut(s) 928, 1062
PvuI CGATCG 1 cut(s) 1060
RsaI GTAC 3 cut(s) 475, 659, 819
RsaNI GTAC 3 cut(s) 474, 658, 818
RseI CAYNNNNRTG 3 cut(s) 98, 445, 672
SacI GAGCTC 1 cut(s) 799
SatI GCNGC 4 cut(s) 451, 542, 904, 1161
Sau96I GGNCC 2 cut(s) 769, 1186
SchI GAGTC 3 cut(s) 724, 1226, 1235
ScrFI CCNGG 9 cut(s) 29, 149, 260, 567, 692, 749, 801, 822, 852
SduI GDGCHC 2 cut(s) 149, 799
SexAI ACCWGGT 2 cut(s) 565, 820
SfaNI GCATC 2 cut(s) 64, 353
SfcI CTRYAG 1 cut(s) 912
Sfr274I CTCGAG 1 cut(s) 222
SgrAI CRCCGGYG 2 cut(s) 719, 1202
SinI GGWCC 2 cut(s) 769, 1186
SlaI CTCGAG 1 cut(s) 222
SmiMI CAYNNNNRTG 3 cut(s) 98, 445, 672
SmlI CTYRAG 3 cut(s) 222, 841, 868
SmoI CTYRAG 3 cut(s) 222, 841, 868
SphI GCATGC 1 cut(s) 317
Sse9I AATT 3 cut(s) 105, 923, 1051
SsiI CCGC 7 cut(s) 55, 723, 744, 970, 1143, 1161, 1184
SspMI CTAG 1 cut(s) 366
SstI GAGCTC 1 cut(s) 799
StyD4I CCNGG 9 cut(s) 27, 147, 258, 565, 690, 747, 799, 820, 850
TaaI ACNGT 3 cut(s) 437, 553, 1215
TaiI ACGT 2 cut(s) 991, 1106
TaqI TCGA 5 cut(s) 223, 899, 1046, 1179, 1246
TasI AATT 3 cut(s) 105, 923, 1051
TauI GCSGC 1 cut(s) 1163
TfiI GAWTC 4 cut(s) 133, 271, 422, 1024
TscAI CASTG 3 cut(s) 510, 708, 916
TseFI GTSAC 4 cut(s) 493, 505, 989, 1104
TseI GCWGC 3 cut(s) 450, 541, 903
Tsp45I GTSAC 4 cut(s) 493, 505, 989, 1104
TspDTI ATGAA 3 cut(s) 390, 503, 822
TspGWI ACGGA 2 cut(s) 643, 1256
TspRI CASTG 3 cut(s) 510, 708, 916
VpaK11BI GGWCC 2 cut(s) 769, 1186
XagI CCTNNNNNAGG 1 cut(s) 977
XapI RAATTY 1 cut(s) 1051
XceI RCATGY 1 cut(s) 317
XhoI CTCGAG 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 432
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.