Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015637

Physical Location & Seq

Genomic Coordinates Forward (+)

49830617 .. 49831579

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20292

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCGAAGAAAGGAGAAAAGCAACCCCAGGCATCGAAACGAAAACGAAATCCCCGCACAAAAGAAAAACCAGATGCTTCTTTTATATCTTCCACTACTATGGAAATTGATCACTACAAAATACTTGGAGTGAATCGCAACGCGAGCCCGGATGAGGTGAAGAAAGCATACAGGAAACTGGTCATGTTTTGGCACCCTGACAAACACTTGCAGGAAGAAGCTCGAGCTAAGGCCGAGGCCAAGTTCAAGGAAATCAACCAGGCTTACCAGATTCTCAACGACCCTGTGAAACGACACAACTACGATAATCAGCATGCAAATATAGCCAACTCCAATAGGACGGCATCGTCATTTTCGTTTCCTCCTAGTAAGGATGAAAATACTTTTGCTACCGTGTTTGGATTTGGTAGTCGGAGGACAGATTCAATGGTGTATAGTCCATTGGAGTGTAGCTTGGAGGAGCTTTATCAGGGTACTACGAAGAAGATGAAGGTGACGAGAGCAGTGACGAATGCTTTGGGGGAGGAGACTATGGTGGAGCAGCCTTTGACAGTCAACATAAAACCTGGTTTCCGGCACGGCACCAATATAACTTACAAGGTGGAAGCTAATACAGCAGATGTAGGTTTCGTCATCAAAGAGAAACAACATTCCGTGTACGAGAGGCATGGGAATGATCTCATAGTCCACCAGGAGATAACACTGCTGGAGGCGCTCACCGGCGGTAGGACTCTTGATCTGACCACCCTGAATGGAAGGAAGCTCATGGTCCCGTTACCCGATGATGTCATCAGAGCTCCTGGGGATGAAATGGTTGTACCAGGTGAAGGAATGCCAATCTCAAGCCAACCTGGGGTAAAAGGAAACTTGAGGATCAAGTTCAATGTCAAGTTTCCTTCGAGCAGCCTCACTGCAGAACAGAAATTGGATTTGAAAAGAGGCTTGGGAGGAGTTCCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

320

Amino Acids

35.87

Weight (kDa)

9.44

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	37 - 102	4.2e-25	DnaJ domain
DnaJ_C	PF01556	147 - 299	6.2e-31	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31340
rosa_chinensis	RchiOBHm_Chr7g0226561
rosa_laevigata	RLG00000001715 RLG00000001717
rosa_multiflora	Rmu_sc0001423.1_g000007 Rmu_sc0001423.1_g000017
rosa_roxburghii	Rroxscaffold_3G00232700
rosa_rugosa	Rorug07G0238400
rosa_samantha	Rh7AG385600 Rh7AG385900 Rh7BG372400 Rh7BG372600 Rh7CG404800 Rh7CG405200 Rh7DG384600
rosa_wichuraiana	Rw7G032400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	346
AccB1I	GGYRCC	2 cut(s)	192, 581
AccII	CGCG	1 cut(s)	143
AciI	CCGC	2 cut(s)	55, 723
AclWI	GGATC	1 cut(s)	881
AfaI	GTAC	3 cut(s)	475, 659, 819
AfiI	CCNNNNNNNGG	4 cut(s)	154, 726, 827, 853
AgsI	TTSAA	4 cut(s)	247, 426, 883, 934
AjnI	CCWGG	7 cut(s)	27, 258, 565, 690, 799, 820, 850
AjuI	GAANNNNNNNTTGG	2 cut(s)	926, 958
AluBI	AGCT	7 cut(s)	221, 227, 453, 463, 608, 763, 797
AluI	AGCT	7 cut(s)	221, 227, 453, 463, 608, 763, 797
Alw21I	GWGCWC	1 cut(s)	799
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	1 cut(s)	881
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	2 cut(s)	231, 237
ApeKI	GCWGC	2 cut(s)	541, 903
ArsI	GACNNNNNNTTYG	2 cut(s)	499, 531
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	1 cut(s)	769
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	4 cut(s)	169, 505, 709, 836
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	769
BanI	GGYRCC	2 cut(s)	192, 581
BanII	GRGCYC	2 cut(s)	149, 799
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
Bbv12I	GWGCWC	1 cut(s)	799
BbvI	GCAGC	2 cut(s)	553, 915
BceAI	ACGGC	2 cut(s)	357, 595
BciT130I	CCWGG	7 cut(s)	29, 260, 567, 692, 801, 822, 852
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	912
BfoI	RGCGCY	1 cut(s)	716
BisI	GCNGC	2 cut(s)	542, 904
BlsI	GCNGC	2 cut(s)	543, 905
Bme1390I	CCNGG	8 cut(s)	29, 149, 260, 567, 692, 801, 822, 852
Bme18I	GGWCC	1 cut(s)	769
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	769
BmiI	GGNNCC	3 cut(s)	194, 583, 771
BmrFI	CCNGG	8 cut(s)	29, 149, 260, 567, 692, 801, 822, 852
BmsI	GCATC	3 cut(s)	41, 64, 353
BpmI	CTGGAG	1 cut(s)	728
Bpu10I	CCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	826, 889
BpuMI	CCSGG	1 cut(s)	149
BsaJI	CCNNGG	4 cut(s)	27, 234, 800, 851
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 726, 827, 853
Bse118I	RCCGGY	1 cut(s)	719
Bse1I	ACTGG	1 cut(s)	183
BseBI	CCWGG	7 cut(s)	29, 260, 567, 692, 801, 822, 852
BseDI	CCNNGG	4 cut(s)	27, 234, 800, 851
BseGI	GGATG	3 cut(s)	157, 379, 811
BseLI	CCNNNNNNNGG	4 cut(s)	154, 726, 827, 853
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	3 cut(s)	473, 539, 963
BseXI	GCAGC	2 cut(s)	553, 915
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	233, 239
BshNI	GGYRCC	2 cut(s)	192, 581
BsiHKAI	GWGCWC	1 cut(s)	799
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	3 cut(s)	149, 574, 720
BslFI	GGGAC	1 cut(s)	755
BslI	CCNNNNNNNGG	4 cut(s)	154, 726, 827, 853
BsmAI	GTCTC	1 cut(s)	521
BsmFI	GGGAC	1 cut(s)	755
BsmI	GAATGC	2 cut(s)	517, 837
BsnI	GGCC	2 cut(s)	233, 239
BsoBI	CYCGRG	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	149, 799
Bsp143I	GATC	4 cut(s)	109, 676, 736, 873
BspACI	CCGC	2 cut(s)	55, 723
BspANI	GGCC	2 cut(s)	233, 239
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	3 cut(s)	194, 583, 771
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	1 cut(s)	881
BspT107I	GGYRCC	2 cut(s)	192, 581
BsrFI	RCCGGY	1 cut(s)	719
BsrI	ACTGG	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	719
BssECI	CCNNGG	4 cut(s)	27, 234, 800, 851
BssMI	GATC	4 cut(s)	109, 676, 736, 873
Bst2UI	CCWGG	7 cut(s)	29, 260, 567, 692, 801, 822, 852
Bst4CI	ACNGT	2 cut(s)	394, 553
BstC8I	GCNNGC	2 cut(s)	145, 315
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	3 cut(s)	157, 379, 811
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	716
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	4 cut(s)	112, 679, 739, 876
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	4 cut(s)	109, 676, 736, 873
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 323, 614, 712
BstNI	CCWGG	7 cut(s)	29, 260, 567, 692, 801, 822, 852
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	8 cut(s)	27, 147, 258, 565, 690, 799, 820, 850
BstSFI	CTRYAG	1 cut(s)	912
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	553, 915
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	233, 239
BtsCI	GGATG	3 cut(s)	157, 379, 811
BtsI	GCAGTG	3 cut(s)	510, 701, 909
BtsIMutI	CAGTG	3 cut(s)	510, 701, 909
Cac8I	GCNNGC	2 cut(s)	145, 315
CfoI	GCGC	1 cut(s)	715
Cfr10I	RCCGGY	1 cut(s)	719
Cfr13I	GGNCC	1 cut(s)	769
CsiI	ACCWGGT	2 cut(s)	565, 820
Csp6I	GTAC	3 cut(s)	474, 658, 818
CviAII	CATG	4 cut(s)	184, 314, 668, 766
CviQI	GTAC	3 cut(s)	474, 658, 818
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	4 cut(s)	111, 678, 738, 875
DpnII	GATC	4 cut(s)	109, 676, 736, 873
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
Ecl136II	GAGCTC	1 cut(s)	797
Eco24I	GRGCYC	2 cut(s)	149, 799
Eco47I	GGWCC	1 cut(s)	769
Eco53kI	GAGCTC	1 cut(s)	797
Eco88I	CYCGRG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	797
EcoRII	CCWGG	7 cut(s)	27, 258, 565, 690, 799, 820, 850
EcoT38I	GRGCYC	2 cut(s)	149, 799
FaeI	CATG	4 cut(s)	187, 317, 671, 769
FaqI	GGGAC	1 cut(s)	755
FatI	CATG	4 cut(s)	183, 313, 667, 765
FauI	CCCGC	1 cut(s)	62
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	542, 904
FokI	GGATG	3 cut(s)	164, 386, 818
FriOI	GRGCYC	2 cut(s)	149, 799
Fsp4HI	GCNGC	2 cut(s)	542, 904
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	2 cut(s)	542, 904
GsuI	CTGGAG	1 cut(s)	728
HaeII	RGCGCY	1 cut(s)	716
HaeIII	GGCC	2 cut(s)	233, 239
HapII	CCGG	3 cut(s)	149, 574, 720
HhaI	GCGC	1 cut(s)	715
Hin1II	CATG	4 cut(s)	187, 317, 671, 769
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	4 cut(s)	133, 271, 422, 730
HpaII	CCGG	3 cut(s)	149, 574, 720
HphI	GGTGA	4 cut(s)	169, 505, 709, 836
Hpy166II	GTNNAC	3 cut(s)	556, 658, 688
Hpy188I	TCNGA	3 cut(s)	414, 741, 794
Hpy188III	TCNNGA	1 cut(s)	734
Hpy8I	GTNNAC	3 cut(s)	556, 658, 688
HpyAV	CCTTC	4 cut(s)	484, 750, 821, 906
HpyCH4III	ACNGT	2 cut(s)	394, 553
HpyCH4V	TGCA	3 cut(s)	211, 317, 914
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 323, 614, 712
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	187, 317, 671, 769
HspAI	GCGC	1 cut(s)	713
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	109, 676, 736, 873
LmnI	GCTCC	3 cut(s)	460, 538, 802
Lsp1109I	GCAGC	2 cut(s)	553, 915
LweI	GCATC	3 cut(s)	41, 64, 353
MabI	ACCWGGT	2 cut(s)	565, 820
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	3 cut(s)	493, 505, 774
MalI	GATC	4 cut(s)	111, 678, 738, 875
MboI	GATC	4 cut(s)	109, 676, 736, 873
MboII	GAAGA	6 cut(s)	19, 81, 172, 227, 493, 496
MhlI	GDGCHC	2 cut(s)	149, 799
MluCI	AATT	2 cut(s)	105, 923
MlyI	GAGTC	1 cut(s)	724
MmeI	TCCRAC	1 cut(s)	392
MslI	CAYNNNNRTG	3 cut(s)	98, 445, 672
MspI	CCGG	3 cut(s)	149, 574, 720
MspR9I	CCNGG	8 cut(s)	29, 149, 260, 567, 692, 801, 822, 852
Mva1269I	GAATGC	2 cut(s)	517, 837
MvaI	CCWGG	7 cut(s)	29, 260, 567, 692, 801, 822, 852
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	144, 323, 614, 712
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	4 cut(s)	109, 676, 736, 873
NlaIII	CATG	4 cut(s)	187, 317, 671, 769
NlaIV	GGNNCC	3 cut(s)	194, 583, 771
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	2 cut(s)	493, 505
NspI	RCATGY	1 cut(s)	317
PaeI	GCATGC	1 cut(s)	317
PaeR7I	CTCGAG	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PctI	GAATGC	2 cut(s)	517, 837
PfeI	GAWTC	3 cut(s)	133, 271, 422
PkrI	GCNGC	2 cut(s)	543, 905
PleI	GAGTC	1 cut(s)	724
PpsI	GAGTC	1 cut(s)	724
Psp124BI	GAGCTC	1 cut(s)	799
Psp6I	CCWGG	7 cut(s)	27, 258, 565, 690, 799, 820, 850
PspGI	CCWGG	7 cut(s)	27, 258, 565, 690, 799, 820, 850
PspN4I	GGNNCC	3 cut(s)	194, 583, 771
PspPI	GGNCC	1 cut(s)	769
PspXI	VCTCGAGB	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	916
RsaI	GTAC	3 cut(s)	475, 659, 819
RsaNI	GTAC	3 cut(s)	474, 658, 818
RseI	CAYNNNNRTG	3 cut(s)	98, 445, 672
SacI	GAGCTC	1 cut(s)	799
SatI	GCNGC	2 cut(s)	542, 904
Sau3AI	GATC	4 cut(s)	109, 676, 736, 873
Sau96I	GGNCC	1 cut(s)	769
SchI	GAGTC	1 cut(s)	724
ScrFI	CCNGG	8 cut(s)	29, 149, 260, 567, 692, 801, 822, 852
SduI	GDGCHC	2 cut(s)	149, 799
SexAI	ACCWGGT	2 cut(s)	565, 820
SfaNI	GCATC	3 cut(s)	41, 64, 353
SfcI	CTRYAG	1 cut(s)	912
Sfr274I	CTCGAG	1 cut(s)	222
SgrAI	CRCCGGYG	1 cut(s)	719
SinI	GGWCC	1 cut(s)	769
SlaI	CTCGAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	3 cut(s)	98, 445, 672
SmlI	CTYRAG	3 cut(s)	222, 841, 868
SmoI	CTYRAG	3 cut(s)	222, 841, 868
SphI	GCATGC	1 cut(s)	317
Sse9I	AATT	2 cut(s)	105, 923
SsiI	CCGC	2 cut(s)	55, 723
SspMI	CTAG	1 cut(s)	366
SstI	GAGCTC	1 cut(s)	799
StyD4I	CCNGG	8 cut(s)	27, 147, 258, 565, 690, 799, 820, 850
TaaI	ACNGT	2 cut(s)	394, 553
TaqI	TCGA	3 cut(s)	35, 223, 899
TasI	AATT	2 cut(s)	105, 923
TfiI	GAWTC	3 cut(s)	133, 271, 422
TscAI	CASTG	3 cut(s)	510, 708, 916
TseFI	GTSAC	2 cut(s)	493, 505
TseI	GCWGC	2 cut(s)	541, 903
Tsp45I	GTSAC	2 cut(s)	493, 505
TspDTI	ATGAA	3 cut(s)	390, 503, 822
TspGWI	ACGGA	2 cut(s)	643, 945
TspRI	CASTG	3 cut(s)	510, 708, 916
VpaK11BI	GGWCC	1 cut(s)	769
XceI	RCATGY	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	222
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.