Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001423.1

Orthogroup ID

OG0015637

Physical Location & Seq

Genomic Coordinates Reverse (-)

92777 .. 95588

Gene Structure 2812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001423.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgaaggtgacaagagccgtgacagtcaacataaaacccagtttaggcaccaagataacttacaaggtggaagctaacactgcagatgtaggttttctcatcaaagagaaacaacatttcgtatacgagaggcaaaggaatgatctcatagtccaccaggtgataacaccgatggaggcgctcaccggcgataggactcttaatttgaccatcaatagcggatccagaatccgaatatgtgatcacctctacaaaatttcagccaaattggtgatcgttcagttacatacctatacttgggggtttttcctcttgattttggattgggctgaccaccctggacggaaggaagctcttggtcccattaccgatgatatcatgagagctcgtagggatgaaatggttgtaccaggtgagggaatgccaatctcaagccaacgtggggtgaaagaaaacttgaggatccagttcaatgtcaagtttcctacgagcagcctcactgttgaacagaaattggatttgaaaagaggcttgggaggagcttcattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

183

Amino Acids

20.7

Weight (kDa)

9.64

Isoelectric Point (pI)

16.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31340
rosa_chinensis	RchiOBHm_Chr7g0226561
rosa_laevigata	RLG00000001715 RLG00000001717
rosa_multiflora	Rmu_sc0001423.1_g000007 Rmu_sc0001423.1_g000017
rosa_roxburghii	Rroxscaffold_3G00232700
rosa_rugosa	Rorug07G0238400
rosa_samantha	Rh7AG385600 Rh7AG385900 Rh7BG372400 Rh7BG372600 Rh7CG404800 Rh7CG405200 Rh7DG384600
rosa_wichuraiana	Rw7G032400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	4 cut(s)	216, 229, 457, 470
AcsI	RAATTY	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	160
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	5 cut(s)	44, 192, 297, 416, 442
AgsI	TTSAA	3 cut(s)	472, 506, 523
AjnI	CCWGG	3 cut(s)	156, 337, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	515, 547
AluBI	AGCT	4 cut(s)	74, 353, 386, 542
AluI	AGCT	4 cut(s)	74, 353, 386, 542
Alw21I	GWGCWC	1 cut(s)	388
AlwI	GGATC	4 cut(s)	216, 229, 457, 470
ApeKI	GCWGC	1 cut(s)	492
ApoI	RAATTY	1 cut(s)	255
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	7 cut(s)	19, 172, 175, 236, 283, 425, 457
AvaII	GGWCC	1 cut(s)	359
BamHI	GGATCC	2 cut(s)	221, 462
BanI	GGYRCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	1 cut(s)	504
BccI	CCATC	2 cut(s)	166, 218
BceAI	ACGGC	1 cut(s)	2
BciT130I	CCWGG	3 cut(s)	158, 339, 411
BclI	TGATCA	1 cut(s)	241
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	182
BisI	GCNGC	1 cut(s)	493
BlsI	GCNGC	1 cut(s)	494
Bme1390I	CCNGG	3 cut(s)	158, 339, 411
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	4 cut(s)	49, 223, 361, 464
BmrFI	CCNGG	3 cut(s)	158, 339, 411
BmrI	ACTGGG	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	33
BpuEI	CTTGAG	2 cut(s)	415, 478
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 192, 297, 416, 442
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	39, 466
BseBI	CCWGG	3 cut(s)	158, 339, 411
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	5 cut(s)	44, 192, 297, 416, 442
BseNI	ACTGG	2 cut(s)	39, 466
BseRI	GAGGAG	1 cut(s)	552
BseXI	GCAGC	1 cut(s)	504
BshNI	GGYRCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	5 cut(s)	44, 192, 297, 416, 442
BsmFI	GGGAC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	5 cut(s)	142, 221, 241, 273, 462
BspACI	CCGC	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	4 cut(s)	49, 223, 361, 464
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	4 cut(s)	216, 229, 457, 470
BspT107I	GGYRCC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	39, 466
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	5 cut(s)	142, 221, 241, 273, 462
BssNAI	GTATAC	1 cut(s)	124
Bst1107I	GTATAC	1 cut(s)	124
Bst2UI	CCWGG	3 cut(s)	158, 339, 411
Bst4CI	ACNGT	2 cut(s)	25, 502
BstF5I	GGATG	1 cut(s)	400
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	5 cut(s)	145, 224, 244, 276, 465
BstMBI	GATC	5 cut(s)	142, 221, 241, 273, 462
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	3 cut(s)	158, 339, 411
BstSCI	CCNGG	3 cut(s)	156, 337, 409
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	504
BstX2I	RGATCY	2 cut(s)	221, 462
BstYI	RGATCY	2 cut(s)	221, 462
BstZ17I	GTATAC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	400
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 498
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	359
CsiI	ACCWGGT	2 cut(s)	156, 409
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	1 cut(s)	379
CviQI	GTAC	1 cut(s)	407
DpnI	GATC	5 cut(s)	144, 223, 243, 275, 464
DpnII	GATC	5 cut(s)	142, 221, 241, 273, 462
DraIII	CACNNNGTG	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	388
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	386
EcoRII	CCWGG	3 cut(s)	156, 337, 409
EcoRV	GATATC	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	388
FaeI	CATG	1 cut(s)	382
FaiI	YATR	7 cut(s)	32, 124, 149, 238, 288, 294, 380
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	1 cut(s)	378
FbaI	TGATCA	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	493
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	1 cut(s)	493
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	493
HaeII	RGCGCY	1 cut(s)	182
HapII	CCGG	1 cut(s)	186
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	2 cut(s)	196, 228
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	7 cut(s)	19, 172, 175, 236, 283, 425, 457
Hpy166II	GTNNAC	3 cut(s)	28, 124, 154
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	3 cut(s)	225, 313, 379
Hpy8I	GTNNAC	3 cut(s)	28, 124, 154
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	2 cut(s)	25, 502
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	5 cut(s)	142, 221, 241, 273, 462
LmnI	GCTCC	1 cut(s)	539
Lsp1109I	GCAGC	1 cut(s)	504
MabI	ACCWGGT	2 cut(s)	156, 409
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	3 cut(s)	7, 19, 282
MalI	GATC	5 cut(s)	144, 223, 243, 275, 464
MboI	GATC	5 cut(s)	142, 221, 241, 273, 462
MflI	RGATCY	2 cut(s)	221, 462
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	4 cut(s)	202, 255, 266, 512
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	9 cut(s)	123, 169, 257, 320, 409, 453, 506, 521, 530
MseI	TTAA	1 cut(s)	201
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	3 cut(s)	158, 339, 411
Mva1269I	GAATGC	1 cut(s)	426
MvaI	CCWGG	3 cut(s)	158, 339, 411
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	5 cut(s)	142, 221, 241, 273, 462
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	4 cut(s)	49, 223, 361, 464
NmuCI	GTSAC	2 cut(s)	7, 19
PagI	TCATGA	1 cut(s)	378
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	494
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	388
Psp6I	CCWGG	3 cut(s)	156, 337, 409
PspGI	CCWGG	3 cut(s)	156, 337, 409
PspN4I	GGNNCC	4 cut(s)	49, 223, 361, 464
PspPI	GGNCC	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	221, 462
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	493
Sau3AI	GATC	5 cut(s)	142, 221, 241, 273, 462
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	3 cut(s)	158, 339, 411
SduI	GDGCHC	1 cut(s)	388
SexAI	ACCWGGT	2 cut(s)	156, 409
SfcI	CTRYAG	1 cut(s)	81
SgrAI	CRCCGGYG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	430, 457
SmoI	CTYRAG	2 cut(s)	430, 457
Sse9I	AATT	4 cut(s)	202, 255, 266, 512
SsiI	CCGC	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	3 cut(s)	156, 337, 409
TaaI	ACNGT	2 cut(s)	25, 502
TaiI	ACGT	1 cut(s)	442
TasI	AATT	4 cut(s)	202, 255, 266, 512
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	85, 505
TseFI	GTSAC	2 cut(s)	7, 19
TseI	GCWGC	1 cut(s)	492
Tsp45I	GTSAC	2 cut(s)	7, 19
TspDTI	ATGAA	3 cut(s)	17, 411, 534
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	2 cut(s)	85, 505
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.