Rh7BG372400

DnaJ homolog subfamily B member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015637
Physical Location & Seq
Forward (+)
40002750 .. 40003085
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG372400.1

Sequence Viewer

Length: 336 bp
ATGTTTGGATTTGGTAGTCCATTGGAATGTAGCTTAGAGGAGCTTTATCAATTTACTAAGAAGAAGATGAAGGTGACAAGAGCCGTGACAGTCAACATAAAACCCGGTTTCCGGCTAGGCACCAAGATAACTTACAAGGTGGAAGCTAACACTGCAGATGTAGGTTTTGTCATCAAAGAGAAACAACATTTCGTGTACGAGAGGCATAGGAATGATCTCATAGTCCACCAGGTGATAACACTGATGGAGGCGCTCACCGGCGGTAGGACTCTTAATCTGACCATCAATAGCGGATCCAGGATCCGAATATGTGGTTGGTTGGATTTAAGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C

Protein Analysis

111

Amino Acids

12.59

Weight (kDa)

9.59

Isoelectric Point (pI)

23.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 7 - 100 2.4e-14 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 119
AciI CCGC 2 cut(s) 261, 291
AclWI GGATC 4 cut(s) 288, 295, 301, 308
AdeI CACNNNGTG 1 cut(s) 232
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 111, 264
AjnI CCWGG 2 cut(s) 228, 296
AjuI GAANNNNNNNTTGG 2 cut(s) 298, 330
AluBI AGCT 3 cut(s) 33, 43, 146
AluI AGCT 3 cut(s) 33, 43, 146
AlwI GGATC 4 cut(s) 288, 295, 301, 308
AspLEI GCGC 1 cut(s) 253
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 3 cut(s) 85, 244, 247
BamHI GGATCC 2 cut(s) 293, 300
BanI GGYRCC 1 cut(s) 119
BccI CCATC 2 cut(s) 238, 290
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 2 cut(s) 230, 298
BcnI CCSGG 1 cut(s) 105
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 254
Bme1390I CCNGG 3 cut(s) 105, 230, 298
BmiI GGNNCC 3 cut(s) 121, 295, 302
BmrFI CCNGG 3 cut(s) 105, 230, 298
BpuMI CCSGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 264
Bse118I RCCGGY 1 cut(s) 257
BseBI CCWGG 2 cut(s) 230, 298
BseLI CCNNNNNNNGG 2 cut(s) 111, 264
BseRI GAGGAG 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 119
BsiSI CCGG 3 cut(s) 105, 112, 258
BslI CCNNNNNNNGG 2 cut(s) 111, 264
Bsp143I GATC 3 cut(s) 214, 293, 300
BspACI CCGC 2 cut(s) 261, 291
BspLI GGNNCC 3 cut(s) 121, 295, 302
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 4 cut(s) 288, 295, 301, 308
BspT107I GGYRCC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 257
BssMI GATC 3 cut(s) 214, 293, 300
Bst2UI CCWGG 2 cut(s) 230, 298
Bst4CI ACNGT 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 34, 57
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 3 cut(s) 217, 296, 303
BstMBI GATC 3 cut(s) 214, 293, 300
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 2 cut(s) 230, 298
BstSCI CCNGG 3 cut(s) 103, 228, 296
BstSFI CTRYAG 1 cut(s) 153
BstX2I RGATCY 2 cut(s) 293, 300
BstYI RGATCY 2 cut(s) 293, 300
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 239
CfoI GCGC 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 257
CsiI ACCWGGT 1 cut(s) 228
Csp6I GTAC 1 cut(s) 196
CviJI RGCY 5 cut(s) 33, 43, 83, 115, 146
CviKI_1 RGCY 5 cut(s) 33, 43, 83, 115, 146
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 34, 57
DpnI GATC 3 cut(s) 216, 295, 302
DpnII GATC 3 cut(s) 214, 293, 300
DraIII CACNNNGTG 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 228, 296
FaiI YATR 5 cut(s) 98, 207, 221, 310, 334
FspBI CTAG 1 cut(s) 116
GlaI GCGC 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 254
HapII CCGG 3 cut(s) 105, 112, 258
HhaI GCGC 1 cut(s) 253
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 1 cut(s) 268
HpaII CCGG 3 cut(s) 105, 112, 258
HphI GGTGA 3 cut(s) 85, 244, 247
Hpy166II GTNNAC 3 cut(s) 94, 196, 226
Hpy188I TCNGA 2 cut(s) 279, 305
Hpy8I GTNNAC 3 cut(s) 94, 196, 226
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 155, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 34, 57
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 3 cut(s) 214, 293, 300
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 7 cut(s) 118, 125, 215, 242, 271, 283, 310
MabI ACCWGGT 1 cut(s) 228
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 73, 85
MalI GATC 3 cut(s) 216, 295, 302
MboI GATC 3 cut(s) 214, 293, 300
MboII GAAGA 2 cut(s) 73, 76
MflI RGATCY 2 cut(s) 293, 300
MluCI AATT 1 cut(s) 50
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 3 cut(s) 31, 195, 241
MseI TTAA 2 cut(s) 273, 326
MslI CAYNNNNRTG 2 cut(s) 25, 210
MspI CCGG 3 cut(s) 105, 112, 258
MspR9I CCNGG 3 cut(s) 105, 230, 298
MvaI CCWGG 2 cut(s) 230, 298
MwoI GCNNNNNNNGC 1 cut(s) 152
NciI CCSGG 1 cut(s) 105
NdeII GATC 3 cut(s) 214, 293, 300
NlaIV GGNNCC 3 cut(s) 121, 295, 302
NmuCI GTSAC 2 cut(s) 73, 85
PfoI TCCNGGA 1 cut(s) 296
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
Psp6I CCWGG 2 cut(s) 228, 296
PspGI CCWGG 2 cut(s) 228, 296
PspN4I GGNNCC 3 cut(s) 121, 295, 302
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 2 cut(s) 293, 300
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 2 cut(s) 25, 210
SaqAI TTAA 2 cut(s) 273, 326
Sau3AI GATC 3 cut(s) 214, 293, 300
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 3 cut(s) 105, 230, 298
SetI ASST 7 cut(s) 35, 45, 75, 141, 148, 166, 234
SexAI ACCWGGT 1 cut(s) 228
SfcI CTRYAG 1 cut(s) 153
SgrAI CRCCGGYG 1 cut(s) 257
SmiMI CAYNNNNRTG 2 cut(s) 25, 210
Sse9I AATT 1 cut(s) 50
SsiI CCGC 2 cut(s) 261, 291
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 3 cut(s) 103, 228, 296
TaaI ACNGT 1 cut(s) 91
TasI AATT 1 cut(s) 50
Tru1I TTAA 2 cut(s) 273, 326
Tru9I TTAA 2 cut(s) 273, 326
TscAI CASTG 2 cut(s) 157, 246
TseFI GTSAC 2 cut(s) 73, 85
Tsp45I GTSAC 2 cut(s) 73, 85
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 2 cut(s) 157, 246
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.