Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015637

Physical Location & Seq

Genomic Coordinates Forward (+)

52493663 .. 52494625

Gene Structure 963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG384600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCGAAGAAAGGAGAAAAGCAACCCCAGGCATCGAAACGAAAACGAAATCCCCGCACAAAAGAAAAACCAGATGCTTCTTTTATATCTTCCACTACTATGGAAATTGATCACTACAAAATACTTGGAGTGAATCGCAACGCGAGCCCGGATGAGGTGAAGAAAGCATACAGGAAACTGGTCATGTTTTGGCACCCTGACAAACACTTGCAGGAAGAAGCTCGAGCTAAGGCCGAGGCCAAGTTCAAGGAAATCAACCAGGCTTACCAGATTCTCAATGACCCTGTGAAACGACACAACTACGATAGTCAGCATGCAGATATAGCCAACTCTAATAGGACGACATCGTCATTTTGGTTTCCTCCTAGTAAGGATGAAAATACTTTTGCTACCATGTTTGGATTTGGTAGTCGGAGGACAGATTCAATGGTGTATAGTCCATTGGAGTGTAGCTTGGAGGAGCTTTATCAGGGTACTACGAAGAAGATGAAGGTGACGAGAGCCGTGACGAATGCTTTTGGGGAGGAGACTATTGTGGAGCAGCCTTTGACAGTCAACATAAAACCTGGTTTCCGGCACGGCACCAAGATAACTTACAAGGTGGAAGCTAACACAGCAGATGTAGGTTTCGTCATCAAAGAGAAACAACATTCCTTGTACGAGAGGCATGTGAATGATCTCATAGTCCACCAGGAGATAACACTGCTGGAGGCGCTCACCGGCGGTAGGACTCTTGATCTGACCACCCTGGATGGAAGGAAGCTCATGGTCCCGTTACCCGATGATGTCATCAGAGCTCCTGGAGATGAAATGGTTGTACCAGGTGAGGGAATGCCAATCTCAAGCCAACCTGGGGTTAAAGGAAACTTGAGGATCAAGTTCAATGTCAAGTTTCCTTCGAGCATCCTCACTGCAGAACAGAAATTGGATTTGAAAAGAGGCTTGGGAGGAGCTTCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

320

Amino Acids

36.08

Weight (kDa)

9.36

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	37 - 102	4.2e-25	DnaJ domain
DnaJ_C	PF01556	147 - 299	4e-30	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31340
rosa_chinensis	RchiOBHm_Chr7g0226561
rosa_laevigata	RLG00000001715 RLG00000001717
rosa_multiflora	Rmu_sc0001423.1_g000007 Rmu_sc0001423.1_g000017
rosa_roxburghii	Rroxscaffold_3G00232700
rosa_rugosa	Rorug07G0238400
rosa_samantha	Rh7AG385600 Rh7AG385900 Rh7BG372400 Rh7BG372600 Rh7CG404800 Rh7CG405200 Rh7DG384600
rosa_wichuraiana	Rw7G032400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	346
AccB1I	GGYRCC	2 cut(s)	192, 581
AccII	CGCG	1 cut(s)	143
AciI	CCGC	2 cut(s)	55, 723
AclWI	GGATC	1 cut(s)	881
AfaI	GTAC	3 cut(s)	475, 659, 819
AfiI	CCNNNNNNNGG	4 cut(s)	154, 726, 827, 853
AgsI	TTSAA	4 cut(s)	247, 426, 883, 934
AjnI	CCWGG	8 cut(s)	27, 258, 565, 690, 747, 799, 820, 850
AjuI	GAANNNNNNNTTGG	2 cut(s)	926, 958
AluBI	AGCT	8 cut(s)	221, 227, 453, 463, 608, 763, 797, 953
AluI	AGCT	8 cut(s)	221, 227, 453, 463, 608, 763, 797, 953
Alw21I	GWGCWC	1 cut(s)	799
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	1 cut(s)	881
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	2 cut(s)	231, 237
ApeKI	GCWGC	1 cut(s)	541
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	1 cut(s)	769
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	4 cut(s)	169, 505, 709, 836
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	769
BanI	GGYRCC	2 cut(s)	192, 581
BanII	GRGCYC	2 cut(s)	149, 799
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
Bbv12I	GWGCWC	1 cut(s)	799
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	1 cut(s)	746
BceAI	ACGGC	2 cut(s)	488, 595
BciT130I	CCWGG	8 cut(s)	29, 260, 567, 692, 749, 801, 822, 852
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	912
BfoI	RGCGCY	1 cut(s)	716
BisI	GCNGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	543
Bme1390I	CCNGG	9 cut(s)	29, 149, 260, 567, 692, 749, 801, 822, 852
Bme18I	GGWCC	1 cut(s)	769
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	769
BmiI	GGNNCC	3 cut(s)	194, 583, 771
BmrFI	CCNGG	9 cut(s)	29, 149, 260, 567, 692, 749, 801, 822, 852
BmsI	GCATC	3 cut(s)	41, 64, 912
BpmI	CTGGAG	2 cut(s)	728, 822
Bpu10I	CCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	826, 889
BpuMI	CCSGG	1 cut(s)	149
BsaJI	CCNNGG	4 cut(s)	27, 234, 747, 851
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 726, 827, 853
Bse118I	RCCGGY	1 cut(s)	719
Bse1I	ACTGG	1 cut(s)	183
BseBI	CCWGG	8 cut(s)	29, 260, 567, 692, 749, 801, 822, 852
BseDI	CCNNGG	4 cut(s)	27, 234, 747, 851
BseGI	GGATG	4 cut(s)	157, 379, 757, 903
BseLI	CCNNNNNNNGG	4 cut(s)	154, 726, 827, 853
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	3 cut(s)	473, 539, 963
BseXI	GCAGC	1 cut(s)	553
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	233, 239
BshNI	GGYRCC	2 cut(s)	192, 581
BsiHKAI	GWGCWC	1 cut(s)	799
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	3 cut(s)	149, 574, 720
BslFI	GGGAC	1 cut(s)	755
BslI	CCNNNNNNNGG	4 cut(s)	154, 726, 827, 853
BsmAI	GTCTC	1 cut(s)	521
BsmFI	GGGAC	1 cut(s)	755
BsmI	GAATGC	2 cut(s)	517, 837
BsnI	GGCC	2 cut(s)	233, 239
BsoBI	CYCGRG	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	149, 799
Bsp143I	GATC	4 cut(s)	109, 676, 736, 873
BspACI	CCGC	2 cut(s)	55, 723
BspANI	GGCC	2 cut(s)	233, 239
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	3 cut(s)	194, 583, 771
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	1 cut(s)	881
BspT107I	GGYRCC	2 cut(s)	192, 581
BsrFI	RCCGGY	1 cut(s)	719
BsrI	ACTGG	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	719
BssECI	CCNNGG	4 cut(s)	27, 234, 747, 851
BssMI	GATC	4 cut(s)	109, 676, 736, 873
Bst2UI	CCWGG	8 cut(s)	29, 260, 567, 692, 749, 801, 822, 852
Bst4CI	ACNGT	1 cut(s)	553
BstC8I	GCNNGC	2 cut(s)	145, 315
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	4 cut(s)	157, 379, 757, 903
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	716
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	4 cut(s)	112, 679, 739, 876
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	4 cut(s)	109, 676, 736, 873
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 323, 614, 712
BstNI	CCWGG	8 cut(s)	29, 260, 567, 692, 749, 801, 822, 852
BstNSI	RCATGY	2 cut(s)	317, 671
BstSCI	CCNGG	9 cut(s)	27, 147, 258, 565, 690, 747, 799, 820, 850
BstSFI	CTRYAG	1 cut(s)	912
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	233, 239
BtsCI	GGATG	4 cut(s)	157, 379, 757, 903
BtsI	GCAGTG	2 cut(s)	701, 909
BtsIMutI	CAGTG	2 cut(s)	701, 909
Cac8I	GCNNGC	2 cut(s)	145, 315
CfoI	GCGC	1 cut(s)	715
Cfr10I	RCCGGY	1 cut(s)	719
Cfr13I	GGNCC	1 cut(s)	769
CsiI	ACCWGGT	2 cut(s)	565, 820
Csp6I	GTAC	3 cut(s)	474, 658, 818
CviAII	CATG	5 cut(s)	184, 314, 394, 668, 766
CviQI	GTAC	3 cut(s)	474, 658, 818
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	4 cut(s)	111, 678, 738, 875
DpnII	GATC	4 cut(s)	109, 676, 736, 873
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
Ecl136II	GAGCTC	1 cut(s)	797
Eco24I	GRGCYC	2 cut(s)	149, 799
Eco47I	GGWCC	1 cut(s)	769
Eco53kI	GAGCTC	1 cut(s)	797
Eco88I	CYCGRG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	797
EcoRII	CCWGG	8 cut(s)	27, 258, 565, 690, 747, 799, 820, 850
EcoT38I	GRGCYC	2 cut(s)	149, 799
FaeI	CATG	5 cut(s)	187, 317, 397, 671, 769
FaqI	GGGAC	1 cut(s)	755
FatI	CATG	5 cut(s)	183, 313, 393, 667, 765
FauI	CCCGC	1 cut(s)	62
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	542
FokI	GGATG	4 cut(s)	164, 386, 764, 890
FriOI	GRGCYC	2 cut(s)	149, 799
Fsp4HI	GCNGC	1 cut(s)	542
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	1 cut(s)	542
GsuI	CTGGAG	2 cut(s)	728, 822
HaeII	RGCGCY	1 cut(s)	716
HaeIII	GGCC	2 cut(s)	233, 239
HapII	CCGG	3 cut(s)	149, 574, 720
HhaI	GCGC	1 cut(s)	715
Hin1II	CATG	5 cut(s)	187, 317, 397, 671, 769
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	4 cut(s)	133, 271, 422, 730
HpaII	CCGG	3 cut(s)	149, 574, 720
HphI	GGTGA	4 cut(s)	169, 505, 709, 836
Hpy166II	GTNNAC	2 cut(s)	556, 688
Hpy188I	TCNGA	3 cut(s)	414, 741, 794
Hpy188III	TCNNGA	1 cut(s)	734
Hpy8I	GTNNAC	2 cut(s)	556, 688
HpyAV	CCTTC	3 cut(s)	484, 750, 906
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4V	TGCA	3 cut(s)	211, 317, 914
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 323, 614, 712
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	5 cut(s)	187, 317, 397, 671, 769
HspAI	GCGC	1 cut(s)	713
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	109, 676, 736, 873
LmnI	GCTCC	4 cut(s)	460, 538, 802, 950
Lsp1109I	GCAGC	1 cut(s)	553
LweI	GCATC	3 cut(s)	41, 64, 912
MabI	ACCWGGT	2 cut(s)	565, 820
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	3 cut(s)	493, 505, 774
MalI	GATC	4 cut(s)	111, 678, 738, 875
MboI	GATC	4 cut(s)	109, 676, 736, 873
MboII	GAAGA	6 cut(s)	19, 81, 172, 227, 493, 496
MhlI	GDGCHC	2 cut(s)	149, 799
MluCI	AATT	2 cut(s)	105, 923
MlyI	GAGTC	1 cut(s)	724
MmeI	TCCRAC	1 cut(s)	392
MseI	TTAA	1 cut(s)	858
MslI	CAYNNNNRTG	3 cut(s)	98, 445, 672
MspI	CCGG	3 cut(s)	149, 574, 720
MspR9I	CCNGG	9 cut(s)	29, 149, 260, 567, 692, 749, 801, 822, 852
Mva1269I	GAATGC	2 cut(s)	517, 837
MvaI	CCWGG	8 cut(s)	29, 260, 567, 692, 749, 801, 822, 852
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	144, 323, 614, 712
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	4 cut(s)	109, 676, 736, 873
NlaIII	CATG	5 cut(s)	187, 317, 397, 671, 769
NlaIV	GGNNCC	3 cut(s)	194, 583, 771
NmeAIII	GCCGAG	1 cut(s)	259
NmuCI	GTSAC	2 cut(s)	493, 505
NspI	RCATGY	2 cut(s)	317, 671
PaeI	GCATGC	1 cut(s)	317
PaeR7I	CTCGAG	1 cut(s)	222
PctI	GAATGC	2 cut(s)	517, 837
PfeI	GAWTC	3 cut(s)	133, 271, 422
PflFI	GACNNNGTC	1 cut(s)	346
PfoI	TCCNGGA	1 cut(s)	799
PkrI	GCNGC	1 cut(s)	543
PleI	GAGTC	1 cut(s)	724
PpsI	GAGTC	1 cut(s)	724
Psp124BI	GAGCTC	1 cut(s)	799
Psp6I	CCWGG	8 cut(s)	27, 258, 565, 690, 747, 799, 820, 850
PspGI	CCWGG	8 cut(s)	27, 258, 565, 690, 747, 799, 820, 850
PspN4I	GGNNCC	3 cut(s)	194, 583, 771
PspPI	GGNCC	1 cut(s)	769
PspXI	VCTCGAGB	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	916
PsyI	GACNNNGTC	1 cut(s)	346
RsaI	GTAC	3 cut(s)	475, 659, 819
RsaNI	GTAC	3 cut(s)	474, 658, 818
RseI	CAYNNNNRTG	3 cut(s)	98, 445, 672
SacI	GAGCTC	1 cut(s)	799
SaqAI	TTAA	1 cut(s)	858
SatI	GCNGC	1 cut(s)	542
Sau3AI	GATC	4 cut(s)	109, 676, 736, 873
Sau96I	GGNCC	1 cut(s)	769
SchI	GAGTC	1 cut(s)	724
ScrFI	CCNGG	9 cut(s)	29, 149, 260, 567, 692, 749, 801, 822, 852
SduI	GDGCHC	2 cut(s)	149, 799
SexAI	ACCWGGT	2 cut(s)	565, 820
SfaNI	GCATC	3 cut(s)	41, 64, 912
SfcI	CTRYAG	1 cut(s)	912
Sfr274I	CTCGAG	1 cut(s)	222
SgrAI	CRCCGGYG	1 cut(s)	719
SinI	GGWCC	1 cut(s)	769
SlaI	CTCGAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	3 cut(s)	98, 445, 672
SmlI	CTYRAG	3 cut(s)	222, 841, 868
SmoI	CTYRAG	3 cut(s)	222, 841, 868
SphI	GCATGC	1 cut(s)	317
Sse9I	AATT	2 cut(s)	105, 923
SsiI	CCGC	2 cut(s)	55, 723
SspMI	CTAG	1 cut(s)	366
SstI	GAGCTC	1 cut(s)	799
StyD4I	CCNGG	9 cut(s)	27, 147, 258, 565, 690, 747, 799, 820, 850
TaaI	ACNGT	1 cut(s)	553
TaqI	TCGA	3 cut(s)	35, 223, 899
TasI	AATT	2 cut(s)	105, 923
TfiI	GAWTC	3 cut(s)	133, 271, 422
Tru1I	TTAA	1 cut(s)	858
Tru9I	TTAA	1 cut(s)	858
TscAI	CASTG	2 cut(s)	708, 916
TseFI	GTSAC	2 cut(s)	493, 505
TseI	GCWGC	1 cut(s)	541
Tsp45I	GTSAC	2 cut(s)	493, 505
TspDTI	ATGAA	3 cut(s)	390, 503, 822
TspRI	CASTG	2 cut(s)	708, 916
Tth111I	GACNNNGTC	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	769
XceI	RCATGY	2 cut(s)	317, 671
XhoI	CTCGAG	1 cut(s)	222
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.