Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015637

Physical Location & Seq

Genomic Coordinates Reverse (-)

21915580 .. 21916634

Gene Structure 1055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0238400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAGATCACAAAGCAATTGCTTCTGATCGAAGGTAAGGAGAAGAACATGGTCTACTCACCACTGTCTATTCACGTGGTTTTGTGCATGATAGCTGCTGGGACAAAGGGTCCAGCCATGGACCAGTTGCTCTCTTTCCTCAAGTCCAAGTTCATCAGCGAGCTTAATGACCTCGCCTCCAATTTGGTCCCTCTGGTCTTTGAGGACGGATCGCCAAGTGGCGGGCCTCGCTTGTCATTCGCCAATAGCATTTGGTTAGAGGAATCTGTCTCTATCAAGACTTCTTTCAAAGAAGTGGTGGACTTTTCTTACAAGGCAGCCTTGAAACAAGTAGATTTTAAGGCCAAATATGAAAAAGTGCGATGTGAAGTGAATTCATGGGTGGAGAAGGAGACCAATGGCCTTATCAAAGACATTATTCCTAAATGTTGGAAGGAGCAGTATGTACGTGCCTTTGACGGCTTCAAAGTGTTAAGGCTTCCTTATGAACAAGGCCTAGACTACGAGAGGCGGTTCTCAATGTATGTGTTTCTTCCAAATGCAAGAGATGGACTGCCAGCTTTGGTTGAGAGAGTTTCTTCTGAGTCTGGGTTTCTAGATCGGCATATTCCCAATAAATGTGTTCCAGTTCGTAGATTTTTAATCCCAAAGTTTAAGATCTGTTCTTACTTTGACTACATCAAGGTTCTGGAAAAGTTGGGATTGAAGACTTTCAAGTTGCCTTGTTTGACAGAAATGGTGGAAGGCAAGGCCCTATTTGTTAAAAATATACACCACAAATCTTTCATTGAAGTTATTGAAGAAGGCACAGAAGCTGCTGCAGCTATTGTTAAATGTGGGGGATCTAGGAAACCTCCTCCTCGGATAGATTTTGAAGCAGATCACCAGAAAAAGTCAGAGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

302

Amino Acids

34.38

Weight (kDa)

8.97

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	11 - 142	1.5e-26	Serpin (serine protease inhibitor)
Serpin	PF00079	151 - 295	2.8e-22	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31340
rosa_chinensis	RchiOBHm_Chr7g0226561
rosa_laevigata	RLG00000001715 RLG00000001717
rosa_multiflora	Rmu_sc0001423.1_g000007 Rmu_sc0001423.1_g000017
rosa_roxburghii	Rroxscaffold_3G00232700
rosa_rugosa	Rorug07G0238400
rosa_samantha	Rh7AG385600 Rh7AG385900 Rh7BG372400 Rh7BG372600 Rh7CG404800 Rh7CG405200 Rh7DG384600
rosa_wichuraiana	Rw7G032400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	2 cut(s)	222, 511
AclWI	GGATC	2 cut(s)	217, 850
AcsI	RAATTY	1 cut(s)	373
AcvI	CACGTG	1 cut(s)	76
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	8 cut(s)	289, 325, 466, 706, 715, 791, 800, 875
AhdI	GACNNNNNGTC	1 cut(s)	108
AluBI	AGCT	5 cut(s)	95, 163, 560, 815, 824
AluI	AGCT	5 cut(s)	95, 163, 560, 815, 824
Alw26I	GTCTC	2 cut(s)	274, 386
AlwI	GGATC	2 cut(s)	217, 850
AlwNI	CAGNNNCTG	1 cut(s)	815
AoxI	GGCC	5 cut(s)	224, 342, 400, 493, 750
ApeKI	GCWGC	5 cut(s)	95, 317, 815, 818, 821
ApoI	RAATTY	1 cut(s)	373
Asp700I	GAANNNNTTC	1 cut(s)	710
AspS9I	GGNCC	5 cut(s)	110, 121, 187, 224, 751
AsuHPI	GGTGA	2 cut(s)	51, 875
AvaII	GGWCC	3 cut(s)	110, 121, 187
BbrPI	CACGTG	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	713
BbvI	GCAGC	5 cut(s)	82, 329, 802, 805, 833
BccI	CCATC	1 cut(s)	542
BceAI	ACGGC	1 cut(s)	475
BcoDI	GTCTC	2 cut(s)	274, 386
BfaI	CTAG	3 cut(s)	497, 596, 846
BfmI	CTRYAG	1 cut(s)	819
BglII	AGATCT	1 cut(s)	657
BisI	GCNGC	5 cut(s)	96, 318, 816, 819, 822
BlsI	GCNGC	5 cut(s)	97, 319, 817, 820, 823
Bme18I	GGWCC	3 cut(s)	110, 121, 187
BmeRI	GACNNNNNGTC	1 cut(s)	108
BmgT120I	GGNCC	5 cut(s)	110, 121, 187, 224, 751
BmiI	GGNNCC	2 cut(s)	111, 189
BpiI	GAAGAC	1 cut(s)	713
BpuEI	CTTGAG	1 cut(s)	125
BsaAI	YACGTR	2 cut(s)	76, 449
BsaI	GGTCTC	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	117, 860
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	124, 626
BseDI	CCNNGG	2 cut(s)	117, 860
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	2 cut(s)	124, 626
BseRI	GAGGAG	2 cut(s)	846, 849
BseXI	GCAGC	5 cut(s)	82, 329, 802, 805, 833
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	5 cut(s)	226, 344, 402, 495, 752
BslFI	GGGAC	2 cut(s)	115, 173
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	2 cut(s)	274, 386
BsmFI	GGGAC	2 cut(s)	115, 173
BsnI	GGCC	5 cut(s)	226, 344, 402, 495, 752
Bso31I	GGTCTC	1 cut(s)	386
Bsp143I	GATC	7 cut(s)	6, 27, 209, 598, 657, 842, 880
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	2 cut(s)	222, 511
BspANI	GGCC	5 cut(s)	226, 344, 402, 495, 752
BspCNI	CTCAG	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	111, 189
BspMAI	CTGCAG	1 cut(s)	823
BspPI	GGATC	2 cut(s)	217, 850
BspTNI	GGTCTC	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	124, 626
BssECI	CCNNGG	2 cut(s)	117, 860
BssMI	GATC	7 cut(s)	6, 27, 209, 598, 657, 842, 880
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	66
BstBAI	YACGTR	2 cut(s)	76, 449
BstC8I	GCNNGC	3 cut(s)	161, 224, 558
BstDEI	CTNAG	1 cut(s)	582
BstDSI	CCRYGG	1 cut(s)	117
BstKTI	GATC	7 cut(s)	9, 30, 212, 601, 660, 845, 883
BstMAI	GTCTC	2 cut(s)	274, 386
BstMBI	GATC	7 cut(s)	6, 27, 209, 598, 657, 842, 880
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 821
BstSFI	CTRYAG	1 cut(s)	819
BstV1I	GCAGC	5 cut(s)	82, 329, 802, 805, 833
BstV2I	GAAGAC	1 cut(s)	713
BstX2I	RGATCY	2 cut(s)	657, 842
BstYI	RGATCY	2 cut(s)	657, 842
BsuRI	GGCC	5 cut(s)	226, 344, 402, 495, 752
BtgI	CCRYGG	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	3 cut(s)	161, 224, 558
CaiI	CAGNNNCTG	1 cut(s)	815
Cfr13I	GGNCC	5 cut(s)	110, 121, 187, 224, 751
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	4 cut(s)	49, 88, 118, 378
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	7 cut(s)	8, 29, 211, 600, 659, 844, 882
DpnII	GATC	7 cut(s)	6, 27, 209, 598, 657, 842, 880
DriI	GACNNNNNGTC	1 cut(s)	108
Eam1105I	GACNNNNNGTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	117
Eco147I	AGGCCT	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	386
Eco47I	GGWCC	3 cut(s)	110, 121, 187
Eco72I	CACGTG	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	751
EcoRI	GAATTC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	4 cut(s)	52, 91, 121, 381
FalI	AAGNNNNNCTT	4 cut(s)	305, 337, 466, 498
FaqI	GGGAC	2 cut(s)	115, 173
FatI	CATG	4 cut(s)	48, 87, 117, 377
FauI	CCCGC	1 cut(s)	215
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	5 cut(s)	96, 318, 816, 819, 822
Fsp4HI	GCNGC	5 cut(s)	96, 318, 816, 819, 822
FspBI	CTAG	3 cut(s)	497, 596, 846
GluI	GCNGC	5 cut(s)	96, 318, 816, 819, 822
GsaI	CCCAGC	1 cut(s)	102
HaeIII	GGCC	5 cut(s)	226, 344, 402, 495, 752
Hin1II	CATG	4 cut(s)	52, 91, 121, 381
HinfI	GANTC	2 cut(s)	263, 584
HphI	GGTGA	2 cut(s)	51, 875
Hpy166II	GTNNAC	2 cut(s)	55, 301
Hpy188I	TCNGA	4 cut(s)	27, 583, 864, 898
Hpy188III	TCNNGA	3 cut(s)	277, 596, 689
Hpy8I	GTNNAC	2 cut(s)	55, 301
HpyAV	CCTTC	5 cut(s)	26, 382, 427, 737, 797
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4IV	ACGT	2 cut(s)	75, 448
HpyCH4V	TGCA	3 cut(s)	87, 542, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 821
HpyF3I	CTNAG	1 cut(s)	582
HpySE526I	ACGT	2 cut(s)	75, 448
Hsp92II	CATG	4 cut(s)	52, 91, 121, 381
Kzo9I	GATC	7 cut(s)	6, 27, 209, 598, 657, 842, 880
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	9 cut(s)	84, 126, 137, 179, 570, 573, 639, 674, 899
Lsp1109I	GCAGC	5 cut(s)	82, 329, 802, 805, 833
MaeI	CTAG	3 cut(s)	497, 596, 846
MaeII	ACGT	2 cut(s)	75, 448
MalI	GATC	7 cut(s)	8, 29, 211, 600, 659, 844, 882
MboI	GATC	7 cut(s)	6, 27, 209, 598, 657, 842, 880
MboII	GAAGA	5 cut(s)	55, 524, 570, 718, 812
MfeI	CAATTG	1 cut(s)	17
MflI	RGATCY	2 cut(s)	657, 842
MluCI	AATT	3 cut(s)	17, 181, 373
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	410
MroXI	GAANNNNTTC	1 cut(s)	710
MseI	TTAA	7 cut(s)	165, 339, 473, 641, 654, 762, 831
MunI	CAATTG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	228, 821
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	7 cut(s)	6, 27, 209, 598, 657, 842, 880
NlaIII	CATG	4 cut(s)	52, 91, 121, 381
NlaIV	GGNNCC	2 cut(s)	111, 189
PceI	AGGCCT	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	710
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	5 cut(s)	97, 319, 817, 820, 823
PleI	GAGTC	1 cut(s)	592
PmaCI	CACGTG	1 cut(s)	76
PmlI	CACGTG	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	592
Ppu21I	YACGTR	2 cut(s)	76, 449
PspCI	CACGTG	1 cut(s)	76
PspFI	CCCAGC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	111, 189
PspPI	GGNCC	5 cut(s)	110, 121, 187, 224, 751
PsrI	GAACNNNNNNTAC	2 cut(s)	38, 70
PstI	CTGCAG	1 cut(s)	823
PstNI	CAGNNNCTG	1 cut(s)	815
PsuI	RGATCY	2 cut(s)	657, 842
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
SaqAI	TTAA	7 cut(s)	165, 339, 473, 641, 654, 762, 831
SatI	GCNGC	5 cut(s)	96, 318, 816, 819, 822
Sau3AI	GATC	7 cut(s)	6, 27, 209, 598, 657, 842, 880
Sau96I	GGNCC	5 cut(s)	110, 121, 187, 224, 751
SchI	GAGTC	1 cut(s)	593
SfcI	CTRYAG	1 cut(s)	819
SinI	GGWCC	3 cut(s)	110, 121, 187
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	3 cut(s)	17, 181, 373
SseBI	AGGCCT	1 cut(s)	495
SsiI	CCGC	2 cut(s)	222, 511
SspMI	CTAG	3 cut(s)	497, 596, 846
StuI	AGGCCT	1 cut(s)	495
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	66
TaiI	ACGT	2 cut(s)	78, 451
TaqI	TCGA	1 cut(s)	30
TasI	AATT	3 cut(s)	17, 181, 373
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	7 cut(s)	165, 339, 473, 641, 654, 762, 831
Tru9I	TTAA	7 cut(s)	165, 339, 473, 641, 654, 762, 831
TscAI	CASTG	1 cut(s)	69
TseI	GCWGC	5 cut(s)	95, 317, 815, 818, 821
TspDTI	ATGAA	5 cut(s)	142, 366, 366, 501, 775
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	3 cut(s)	110, 121, 187
XapI	RAATTY	1 cut(s)	373
XbaI	TCTAGA	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	710
XspI	CTAG	3 cut(s)	497, 596, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.