Rh7AG385600

DnaJ homolog subfamily B member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015637
Physical Location & Seq
Forward (+)
50531603 .. 50531932
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG385600.1

Sequence Viewer

Length: 330 bp
ATGTTTGGATTTGGTAGTCCATTGGAATGTAGCTTGGAGGAGCTTTATCAATTTACTAAGAAGAAGATGAAGGTAACAAGAGCCGTGATAGTCAACATAAAACCCGGTTTAGGCACCAAGACAACTTACAAGGTGGAAGCTAACACTGCAGATGTAGGTTTTCTCATCAAAGAGAAACAACATTTCGTGTACGAGAGGCATAGGAATGATCTCATAGTCCACCAGGTGATAACACTGCTGGAGGCGCTCACCGGTGGTAGGACTCTTAATCTGACCATCAATAGCGGATCCAGAATCCGAATATGTGGTTGGTTGGATTTAAGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C

Protein Analysis

109

Amino Acids

12.28

Weight (kDa)

9.43

Isoelectric Point (pI)

24.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 7 - 98 9.9e-10 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AciI CCGC 1 cut(s) 285
AclWI GGATC 2 cut(s) 282, 295
AdeI CACNNNGTG 1 cut(s) 226
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 110, 258
AgeI ACCGGT 1 cut(s) 251
AjnI CCWGG 1 cut(s) 222
AjuI GAANNNNNNNTTGG 2 cut(s) 292, 324
AluBI AGCT 3 cut(s) 33, 43, 140
AluI AGCT 3 cut(s) 33, 43, 140
AlwI GGATC 2 cut(s) 282, 295
AsiGI ACCGGT 1 cut(s) 251
AspLEI GCGC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 238, 241
BamHI GGATCC 1 cut(s) 287
BanI GGYRCC 1 cut(s) 113
BccI CCATC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 224
BcnI CCSGG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 248
Bme1390I CCNGG 2 cut(s) 105, 224
BmiI GGNNCC 2 cut(s) 115, 289
BmrFI CCNGG 2 cut(s) 105, 224
BpmI CTGGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 251
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 258
Bse118I RCCGGY 1 cut(s) 251
BseBI CCWGG 1 cut(s) 224
BseLI CCNNNNNNNGG 2 cut(s) 110, 258
BseRI GAGGAG 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 113
BshTI ACCGGT 1 cut(s) 251
BsiSI CCGG 2 cut(s) 105, 252
BslI CCNNNNNNNGG 2 cut(s) 110, 258
Bsp143I GATC 2 cut(s) 208, 287
BspACI CCGC 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 115, 289
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 2 cut(s) 282, 295
BspT107I GGYRCC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssMI GATC 2 cut(s) 208, 287
Bst2UI CCWGG 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 2 cut(s) 211, 290
BstMBI GATC 2 cut(s) 208, 287
BstMWI GCNNNNNNNGC 2 cut(s) 146, 244
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 2 cut(s) 103, 222
BstSFI CTRYAG 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BtsI GCAGTG 2 cut(s) 144, 233
BtsIMutI CAGTG 2 cut(s) 144, 233
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 251
CsiI ACCWGGT 1 cut(s) 222
Csp6I GTAC 1 cut(s) 190
CspAI ACCGGT 1 cut(s) 251
CviJI RGCY 4 cut(s) 33, 43, 83, 140
CviKI_1 RGCY 4 cut(s) 33, 43, 83, 140
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 57
DpnI GATC 2 cut(s) 210, 289
DpnII GATC 2 cut(s) 208, 287
DraIII CACNNNGTG 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 222
FaiI YATR 5 cut(s) 98, 201, 215, 304, 328
GlaI GCGC 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 260
HaeII RGCGCY 1 cut(s) 248
HapII CCGG 2 cut(s) 105, 252
HhaI GCGC 1 cut(s) 247
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 2 cut(s) 262, 294
HpaII CCGG 2 cut(s) 105, 252
HphI GGTGA 2 cut(s) 238, 241
Hpy166II GTNNAC 3 cut(s) 94, 190, 220
Hpy188I TCNGA 2 cut(s) 273, 299
Hpy188III TCNNGA 1 cut(s) 291
Hpy8I GTNNAC 3 cut(s) 94, 190, 220
HpyAV CCTTC 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 149, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 244
HpyF3I CTNAG 1 cut(s) 57
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 2 cut(s) 208, 287
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 6 cut(s) 118, 209, 224, 236, 265, 304
MabI ACCWGGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 210, 289
MboI GATC 2 cut(s) 208, 287
MboII GAAGA 2 cut(s) 73, 76
MflI RGATCY 1 cut(s) 287
MluCI AATT 1 cut(s) 50
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 3 cut(s) 31, 189, 235
MseI TTAA 2 cut(s) 267, 320
MslI CAYNNNNRTG 2 cut(s) 25, 204
MspI CCGG 2 cut(s) 105, 252
MspR9I CCNGG 2 cut(s) 105, 224
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 146, 244
NciI CCSGG 1 cut(s) 105
NdeII GATC 2 cut(s) 208, 287
NlaIV GGNNCC 2 cut(s) 115, 289
PfeI GAWTC 1 cut(s) 294
PinAI ACCGGT 1 cut(s) 251
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 115, 289
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 25, 204
SaqAI TTAA 2 cut(s) 267, 320
Sau3AI GATC 2 cut(s) 208, 287
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 105, 224
SetI ASST 7 cut(s) 35, 45, 75, 135, 142, 160, 228
SexAI ACCWGGT 1 cut(s) 222
SfcI CTRYAG 1 cut(s) 147
SgrAI CRCCGGYG 1 cut(s) 251
SmiMI CAYNNNNRTG 2 cut(s) 25, 204
Sse9I AATT 1 cut(s) 50
SsiI CCGC 1 cut(s) 285
StyD4I CCNGG 2 cut(s) 103, 222
TasI AATT 1 cut(s) 50
TfiI GAWTC 1 cut(s) 294
Tru1I TTAA 2 cut(s) 267, 320
Tru9I TTAA 2 cut(s) 267, 320
TscAI CASTG 2 cut(s) 151, 240
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 2 cut(s) 151, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.