Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015637

Physical Location & Seq

Genomic Coordinates Reverse (-)

19554509 .. 19556411

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001717

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTTGGATTTGGTAGTCGGAGGATAGATTCAATTGTATGTAGTCCATTGGAATGTAGCTTGGAGGAGCTTTATCAAGTTACTAAGAAGAAGATGAAGGTGACGAGAGCCGTGACAGTCAACATGAAACCTGGTTTCCGGCTAGGCACCAAGATAACTTACAAGGTGGAAGCTAACACTGCAGATGAGATAACACTGATGGAGGCGCTCACCGACGGTAGGACTCTTAATCTAACCACCAATGGCGGATGGTTGGCTGATATTAGTTACATACCTATACTTGGGGGGTTTTTCCTCTTGATTTTGGGTTGGGCTATCCCATTGACTGCATACACGCCCATTGACCACCCTGGATGGAAGGAAGCTCATGGTTCCATTACCGATGATGTCATGAAAGCTCTTGGGTATGAAATGGTTGTACCAGCTGAGGGAATGCCAATCTCAAGCCAACGTGGGGTGAAAGAAAAATGGAGGATCAAGTTCAATGTCAAGTTTCCTTCGAGCAGCCTCACTGCAGTACAGAAATTGGATTTGAAAAGAGGCTTGGGAGGAGCTTCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

188

Amino Acids

20.62

Weight (kDa)

9.2

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g31340
rosa_chinensis	RchiOBHm_Chr7g0226561
rosa_laevigata	RLG00000001715 RLG00000001717
rosa_multiflora	Rmu_sc0001423.1_g000007 Rmu_sc0001423.1_g000017
rosa_roxburghii	Rroxscaffold_3G00232700
rosa_rugosa	Rorug07G0238400
rosa_samantha	Rh7AG385600 Rh7AG385900 Rh7BG372400 Rh7BG372600 Rh7CG404800 Rh7CG405200 Rh7DG384600
rosa_wichuraiana	Rw7G032400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	1 cut(s)	246
AclWI	GGATC	1 cut(s)	482
AfaI	GTAC	2 cut(s)	420, 519
AfiI	CCNNNNNNNGG	4 cut(s)	219, 281, 428, 454
AgsI	TTSAA	3 cut(s)	33, 484, 535
AjnI	CCWGG	2 cut(s)	130, 349
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	7 cut(s)	60, 70, 173, 365, 398, 425, 554
AluI	AGCT	7 cut(s)	60, 70, 173, 365, 398, 425, 554
AlwI	GGATC	1 cut(s)	482
ApeKI	GCWGC	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	208
AsuHPI	GGTGA	3 cut(s)	112, 202, 469
BanI	GGYRCC	1 cut(s)	146
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	516
BccI	CCATC	3 cut(s)	193, 243, 348
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	132, 351
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	2 cut(s)	180, 513
BfoI	RGCGCY	1 cut(s)	209
BisI	GCNGC	1 cut(s)	505
BlsI	GCNGC	1 cut(s)	506
Bme1390I	CCNGG	2 cut(s)	132, 351
BmiI	GGNNCC	2 cut(s)	148, 373
BmrFI	CCNGG	2 cut(s)	132, 351
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	427
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	4 cut(s)	219, 281, 428, 454
BseBI	CCWGG	2 cut(s)	132, 351
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	2 cut(s)	254, 359
BseLI	CCNNNNNNNGG	4 cut(s)	219, 281, 428, 454
BseMII	CTCAG	1 cut(s)	417
BseRI	GAGGAG	2 cut(s)	80, 564
BseXI	GCAGC	1 cut(s)	516
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	4 cut(s)	219, 281, 428, 454
BsmI	GAATGC	1 cut(s)	438
Bsp143I	GATC	1 cut(s)	474
BspACI	CCGC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	418
BspHI	TCATGA	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	148, 373
BspMAI	CTGCAG	2 cut(s)	184, 517
BspPI	GGATC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	132, 351
Bst4CI	ACNGT	2 cut(s)	118, 218
BstDEI	CTNAG	2 cut(s)	84, 426
BstF5I	GGATG	2 cut(s)	254, 359
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	477
BstMBI	GATC	1 cut(s)	474
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	2 cut(s)	132, 351
BstSCI	CCNGG	2 cut(s)	130, 349
BstSFI	CTRYAG	2 cut(s)	180, 513
BstV1I	GCAGC	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	254, 359
BtsI	GCAGTG	2 cut(s)	177, 510
BtsIMutI	CAGTG	3 cut(s)	177, 194, 510
CciI	TCATGA	1 cut(s)	390
CfoI	GCGC	1 cut(s)	208
CsiI	ACCWGGT	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	419, 518
CviAII	CATG	3 cut(s)	124, 368, 391
CviQI	GTAC	2 cut(s)	419, 518
DdeI	CTNAG	2 cut(s)	84, 426
DpnI	GATC	1 cut(s)	476
DpnII	GATC	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	130, 349
FaeI	CATG	3 cut(s)	127, 371, 394
FaiI	YATR	8 cut(s)	40, 125, 272, 278, 331, 369, 392, 408
FatI	CATG	3 cut(s)	123, 367, 390
Fnu4HI	GCNGC	1 cut(s)	505
FokI	GGATG	2 cut(s)	261, 366
Fsp4HI	GCNGC	1 cut(s)	505
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	505
HaeII	RGCGCY	1 cut(s)	209
HapII	CCGG	1 cut(s)	139
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	3 cut(s)	127, 371, 394
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	29, 223
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	3 cut(s)	112, 202, 469
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	298, 391
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	91, 352, 507
HpyCH4III	ACNGT	2 cut(s)	118, 218
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	3 cut(s)	182, 329, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	84, 426
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	3 cut(s)	127, 371, 394
HspAI	GCGC	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	67, 551
LpnPI	CCDG	6 cut(s)	117, 144, 152, 336, 363, 435
Lsp1109I	GCAGC	1 cut(s)	516
MabI	ACCWGGT	1 cut(s)	130
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	4 cut(s)	79, 100, 112, 266
MalI	GATC	1 cut(s)	476
MboI	GATC	1 cut(s)	474
MboII	GAAGA	2 cut(s)	100, 103
MfeI	CAATTG	1 cut(s)	33
MluCI	AATT	2 cut(s)	33, 524
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	9 cut(s)	15, 58, 196, 305, 421, 465, 518, 533, 542
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	52
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	132, 351
MunI	CAATTG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	2 cut(s)	132, 351
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	1 cut(s)	474
NlaIII	CATG	3 cut(s)	127, 371, 394
NlaIV	GGNNCC	2 cut(s)	148, 373
NmuCI	GTSAC	2 cut(s)	100, 112
PagI	TCATGA	1 cut(s)	390
PctI	GAATGC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	506
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	130, 349
PspGI	CCWGG	2 cut(s)	130, 349
PspN4I	GGNNCC	2 cut(s)	148, 373
PstI	CTGCAG	2 cut(s)	184, 517
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	420, 519
RsaNI	GTAC	2 cut(s)	419, 518
RseI	CAYNNNNRTG	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	505
Sau3AI	GATC	1 cut(s)	474
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	132, 351
SexAI	ACCWGGT	1 cut(s)	130
SfcI	CTRYAG	2 cut(s)	180, 513
SmiMI	CAYNNNNRTG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
Sse9I	AATT	2 cut(s)	33, 524
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	130, 349
TaaI	ACNGT	2 cut(s)	118, 218
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	1 cut(s)	500
TasI	AATT	2 cut(s)	33, 524
TatI	WGTACW	1 cut(s)	517
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	3 cut(s)	184, 201, 517
TseFI	GTSAC	2 cut(s)	100, 112
TseI	GCWGC	1 cut(s)	504
Tsp45I	GTSAC	2 cut(s)	100, 112
TspDTI	ATGAA	4 cut(s)	110, 140, 407, 423
TspRI	CASTG	3 cut(s)	184, 201, 517
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.