FvH4_5g33050

tRNA-specific 2-thiouridylase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
23871359 .. 23877839
6481 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g33050.t3

Sequence Viewer

Length: 1455 bp
ATGAAAGCAATGCTTCGAGTCACACCAATGGCAATGACCTCTCTCCTCTCCCACATCACCTCTCTACCTCTCCCTCTCAAACGCCCTTCCTCTCTTTCCTCTCACTCTCCAAAACCCACCAAAACCCTCTTCCTCAAATCCTTCTCCATCTCCGCTGCAATTTCCCAAAACCCAGAGCCTCCTCCCAACAGCATCAATGTTGACATTGGGTCTTACTTGTCCTGTTCCATGCCCCATAAGAAGCCCCTTAAAGTTGCCGTCTTGCTCAGCGGCGGTGTCGACAGCAGTGTCGCTCTCCGCCTCCTCCACGCCGCCGGTCACTCCTGCACCGCCTTCTACCTCAAAATTTGGTTTCAAGAAGGCTTTGAGAACTTTTGGTCAGAATGCCCATGGGAAGAAGATTTGAATTATGCAAAAGCTGTCTGTAATCAGGTTGATGTGCCGCTAGAAGTTGTACATTTGACAGATGAATATTGGAAAAATGTGGTGTCCTACATTATTGAAGAGTATCGATGTGGCCGAACTCCTAACCCAGACGTTCTTTGCAATACAAGAATAAAATTTGGTGTCTTCATGGATGCCATTGACAGTATGGAGTTTGACTATGTTGCTAGTGGACATTATGCAAAAGTTGTCCACCTATCTGCAGATCAAACGGATAAGGATTCTGTTTTGGAATTATCACAAGACATGGTCAAGGATCAGACATACTTCCTTTCACATCTTTCTCAGGACCAGCTTAAGAAGTTAATATTTCCACTTGGTTGTCTGTCGAAGGATAAAGTTCGTAAACTTGCCACAAAGTTTGATCTGCCTAATAAAGAGAGAAAGGACTCTCAAGGAATTTGCTTTCTTGGTAAGGTTAGGTTCAGTGAATTTATTGGAAAGCACATAGGGGAGAAGGAAGGTGTCATATTGGAAGCAGAGACAGGAGATCTCCTTGGAAAACATCGAGGCTTTTGGTTCTACACAATCGGTCAACGTCAAGGTCTGCGCCTCCCAGGAGGACCCTGGTATGTAGTTGAGAAGGATATAAAACACAATGTGGTTTTTGTGTCAAGAAATTACTATTCAGTTGACAAAAGAAGGCGCTTGTTTCGTGTGGGATCCTTGAAATGGCTACATGGGTCTCCCCCAGCCCAGATCAGTCAGCTACAGTGCAAGGTCAGACATGGGCCTCGATTTTGCAATTGTACCGTAAAAATTGAACATGGTGAAGATGGCAATGAAGATGTGGCAGTTGTCAGCTTATCTGAAGATGATCAGGGCCTAGCAGCGGGGCAGTTTGCAGCTTTCTACCAGGGAAGAACCTGCTTAGGCTCCGGAGTAATTTTGGAGTCTTGGGATGATCAGGGTTTTCCCGTATGTACAAAAGCTCTTGAAAATGCTAGGATGGAAGACAAATCTCTTCTTGGGAAACCGGTTAAGATCAAATTTATACCGGAGGCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

485

Amino Acids

54.32

Weight (kDa)

8.27

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_Me_trans PF03054 84 - 287 3.2e-79 tRNA methyl transferase HUP domain
tRNA_Me_trans_M PF20259 292 - 354 2.9e-25 tRNA methyl transferase PRC-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 287
Acc36I ACCTGC 1 cut(s) 1319
AccI GTMKAC 1 cut(s) 279
AccIII TCCGGA 1 cut(s) 1322
AciI CCGC 8 cut(s) 153, 270, 273, 298, 312, 330, 443, 1277
AclWI GGATC 3 cut(s) 708, 1101, 1114
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 5 cut(s) 345, 560, 843, 875, 1433
AcuI CTGAAG 1 cut(s) 1275
AdeI CACNNNGTG 1 cut(s) 1045
AfaI GTAC 3 cut(s) 456, 1195, 1369
AfiI CCNNNNNNNGG 2 cut(s) 1116, 1276
AflII CTTAAG 1 cut(s) 740
AgeI ACCGGT 1 cut(s) 1420
AgsI TTSAA 6 cut(s) 356, 406, 503, 1114, 1208, 1382
AhdI GACNNNNNGTC 1 cut(s) 208
AjnI CCWGG 3 cut(s) 1000, 1010, 1299
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 6 cut(s) 419, 739, 1153, 1248, 1292, 1376
AluI AGCT 6 cut(s) 419, 739, 1153, 1248, 1292, 1376
Alw26I GTCTC 2 cut(s) 920, 1134
AlwI GGATC 3 cut(s) 708, 1101, 1114
Aor13HI TCCGGA 1 cut(s) 1322
AoxI GGCC 3 cut(s) 517, 1175, 1267
ApeKI GCWGC 3 cut(s) 155, 1274, 1289
ApoI RAATTY 5 cut(s) 345, 560, 843, 875, 1433
AsiGI ACCGGT 1 cut(s) 1420
AspLEI GCGC 2 cut(s) 996, 1092
AspS9I GGNCC 4 cut(s) 733, 1007, 1175, 1267
AsuHPI GGTGA 2 cut(s) 49, 1226
AvaII GGWCC 2 cut(s) 733, 1007
BamHI GGATCC 1 cut(s) 1106
BbsI GAAGAC 2 cut(s) 562, 1404
BbvI GCAGC 3 cut(s) 142, 1286, 1301
BccI CCATC 3 cut(s) 155, 1214, 1387
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 3 cut(s) 1002, 1012, 1301
BclI TGATCA 2 cut(s) 1261, 1348
BcoDI GTCTC 2 cut(s) 920, 1134
BfaI CTAG 4 cut(s) 446, 612, 1271, 1389
BfmI CTRYAG 2 cut(s) 645, 1154
BfoI RGCGCY 1 cut(s) 1093
BfrI CTTAAG 1 cut(s) 740
BfuAI ACCTGC 1 cut(s) 1319
BglII AGATCT 1 cut(s) 934
BisI GCNGC 6 cut(s) 156, 271, 312, 443, 1275, 1290
BlpI GCTNAGC 1 cut(s) 266
BlsI GCNGC 6 cut(s) 157, 272, 313, 444, 1276, 1291
Bme1390I CCNGG 3 cut(s) 1002, 1012, 1301
Bme18I GGWCC 2 cut(s) 733, 1007
BmeRI GACNNNNNGTC 1 cut(s) 208
BmgT120I GGNCC 4 cut(s) 733, 1007, 1175, 1267
BmiI GGNNCC 3 cut(s) 1009, 1108, 1321
BmrFI CCNGG 3 cut(s) 1002, 1012, 1301
BmsI GCATC 2 cut(s) 201, 568
BpiI GAAGAC 2 cut(s) 562, 1404
Bpu10I CCTNAGC 1 cut(s) 1315
Bpu1102I GCTNAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 822
Bsa29I ATCGAT 1 cut(s) 511
BsaI GGTCTC 1 cut(s) 1134
BsaJI CCNNGG 5 cut(s) 389, 940, 1000, 1010, 1300
BsaWI WCCGGW 3 cut(s) 1322, 1420, 1441
Bsc4I CCNNNNNNNGG 2 cut(s) 1116, 1276
Bse118I RCCGGY 2 cut(s) 314, 1420
Bse3DI GCAATG 3 cut(s) 15, 39, 1231
BseAI TCCGGA 1 cut(s) 1322
BseBI CCWGG 3 cut(s) 1002, 1012, 1301
BseCI ATCGAT 1 cut(s) 511
BseDI CCNNGG 5 cut(s) 389, 940, 1000, 1010, 1300
BseGI GGATG 3 cut(s) 583, 1351, 1398
BseLI CCNNNNNNNGG 2 cut(s) 1116, 1276
BseMI GCAATG 3 cut(s) 15, 39, 1231
BseMII CTCAG 2 cut(s) 280, 743
BseRI GAGGAG 3 cut(s) 35, 171, 293
BseXI GCAGC 3 cut(s) 142, 1286, 1301
BseYI CCCAGC 1 cut(s) 1135
BsgI GTGCAG 1 cut(s) 310
BshFI GGCC 3 cut(s) 519, 1177, 1269
BshTI ACCGGT 1 cut(s) 1420
BshVI ATCGAT 1 cut(s) 511
BsiSI CCGG 4 cut(s) 315, 1323, 1421, 1442
BslI CCNNNNNNNGG 2 cut(s) 1116, 1276
BsmAI GTCTC 2 cut(s) 920, 1134
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 3 cut(s) 519, 1177, 1269
Bso31I GGTCTC 1 cut(s) 1134
Bsp13I TCCGGA 1 cut(s) 1322
Bsp1407I TGTACA 2 cut(s) 454, 1367
Bsp143I GATC 9 cut(s) 649, 700, 808, 934, 1106, 1143, 1261, 1348, 1428
Bsp1720I GCTNAGC 1 cut(s) 266
Bsp19I CCATGG 1 cut(s) 389
BspACI CCGC 8 cut(s) 153, 270, 273, 298, 312, 330, 443, 1277
BspANI GGCC 3 cut(s) 519, 1177, 1269
BspCNI CTCAG 2 cut(s) 279, 742
BspDI ATCGAT 1 cut(s) 511
BspEI TCCGGA 1 cut(s) 1322
BspLI GGNNCC 3 cut(s) 1009, 1108, 1321
BspMAI CTGCAG 1 cut(s) 649
BspMI ACCTGC 1 cut(s) 1319
BspPI GGATC 3 cut(s) 708, 1101, 1114
BspTI CTTAAG 1 cut(s) 740
BspTNI GGTCTC 1 cut(s) 1134
BsrDI GCAATG 3 cut(s) 15, 39, 1231
BsrFI RCCGGY 2 cut(s) 314, 1420
BsrGI TGTACA 2 cut(s) 454, 1367
BssAI RCCGGY 2 cut(s) 314, 1420
BssECI CCNNGG 5 cut(s) 389, 940, 1000, 1010, 1300
BssMI GATC 9 cut(s) 649, 700, 808, 934, 1106, 1143, 1261, 1348, 1428
BssT1I CCWWGG 2 cut(s) 389, 940
Bst2UI CCWGG 3 cut(s) 1002, 1012, 1301
Bst4CI ACNGT 3 cut(s) 590, 1158, 1198
Bst6I CTCTTC 3 cut(s) 134, 498, 1413
BstAFI CTTAAG 1 cut(s) 740
BstAUI TGTACA 2 cut(s) 454, 1367
BstDEI CTNAG 3 cut(s) 266, 729, 1315
BstDSI CCRYGG 1 cut(s) 389
BstF5I GGATG 3 cut(s) 583, 1351, 1398
BstH2I RGCGCY 1 cut(s) 1093
BstHHI GCGC 2 cut(s) 996, 1092
BstKTI GATC 9 cut(s) 652, 703, 811, 937, 1109, 1146, 1264, 1351, 1431
BstMAI GTCTC 2 cut(s) 920, 1134
BstMBI GATC 9 cut(s) 649, 700, 808, 934, 1106, 1143, 1261, 1348, 1428
BstNI CCWGG 3 cut(s) 1002, 1012, 1301
BstSCI CCNGG 3 cut(s) 1000, 1010, 1299
BstSFI CTRYAG 2 cut(s) 645, 1154
BstV1I GCAGC 3 cut(s) 142, 1286, 1301
BstV2I GAAGAC 2 cut(s) 562, 1404
BstX2I RGATCY 2 cut(s) 934, 1106
BstYI RGATCY 2 cut(s) 934, 1106
Bsu15I ATCGAT 1 cut(s) 511
BsuRI GGCC 3 cut(s) 519, 1177, 1269
BsuTUI ATCGAT 1 cut(s) 511
BtgI CCRYGG 1 cut(s) 389
BtsCI GGATG 3 cut(s) 583, 1351, 1398
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 3 cut(s) 292, 877, 1163
BveI ACCTGC 1 cut(s) 1319
CfoI GCGC 2 cut(s) 996, 1092
Cfr10I RCCGGY 2 cut(s) 314, 1420
Cfr13I GGNCC 4 cut(s) 733, 1007, 1175, 1267
ClaI ATCGAT 1 cut(s) 511
Csp6I GTAC 3 cut(s) 455, 1194, 1368
CspAI ACCGGT 1 cut(s) 1420
CspCI CAANNNNNGTGG 2 cut(s) 787, 822
CviAII CATG 7 cut(s) 229, 390, 574, 691, 1124, 1172, 1211
CviQI GTAC 3 cut(s) 455, 1194, 1368
DdeI CTNAG 3 cut(s) 266, 729, 1315
DpnI GATC 9 cut(s) 651, 702, 810, 936, 1108, 1145, 1263, 1350, 1430
DpnII GATC 9 cut(s) 649, 700, 808, 934, 1106, 1143, 1261, 1348, 1428
DraIII CACNNNGTG 1 cut(s) 1045
DrdI GACNNNNNNGTC 1 cut(s) 287
DriI GACNNNNNGTC 1 cut(s) 208
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 517
Eam1104I CTCTTC 3 cut(s) 134, 498, 1413
Eam1105I GACNNNNNGTC 1 cut(s) 208
EarI CTCTTC 3 cut(s) 134, 498, 1413
EciI GGCGGA 1 cut(s) 287
Eco130I CCWWGG 2 cut(s) 389, 940
Eco31I GGTCTC 1 cut(s) 1134
Eco47I GGWCC 2 cut(s) 733, 1007
Eco57I CTGAAG 1 cut(s) 1275
EcoO109I RGGNCCY 2 cut(s) 1007, 1267
EcoRII CCWGG 3 cut(s) 1000, 1010, 1299
EcoT14I CCWWGG 2 cut(s) 389, 940
ErhI CCWWGG 2 cut(s) 389, 940
FaeI CATG 7 cut(s) 232, 393, 577, 694, 1127, 1175, 1214
FalI AAGNNNNNCTT 1 cut(s) 29
FatI CATG 7 cut(s) 228, 389, 573, 690, 1123, 1171, 1210
FauI CCCGC 1 cut(s) 1270
FbaI TGATCA 2 cut(s) 1261, 1348
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 6 cut(s) 156, 271, 312, 443, 1275, 1290
FokI GGATG 3 cut(s) 590, 1358, 1405
Fsp4HI GCNGC 6 cut(s) 156, 271, 312, 443, 1275, 1290
FspBI CTAG 4 cut(s) 446, 612, 1271, 1389
GlaI GCGC 2 cut(s) 995, 1091
GluI GCNGC 6 cut(s) 156, 271, 312, 443, 1275, 1290
GsaI CCCAGC 1 cut(s) 1139
HaeII RGCGCY 1 cut(s) 1093
HaeIII GGCC 3 cut(s) 519, 1177, 1269
HapII CCGG 4 cut(s) 315, 1323, 1421, 1442
HhaI GCGC 2 cut(s) 996, 1092
Hin1II CATG 7 cut(s) 232, 393, 577, 694, 1127, 1175, 1214
Hin6I GCGC 2 cut(s) 994, 1090
HinP1I GCGC 2 cut(s) 994, 1090
HincII GTYRAC 4 cut(s) 202, 280, 980, 1078
HindII GTYRAC 4 cut(s) 202, 280, 980, 1078
HinfI GANTC 4 cut(s) 18, 665, 833, 1337
HpaII CCGG 4 cut(s) 315, 1323, 1421, 1442
HphI GGTGA 2 cut(s) 49, 1226
Hpy166II GTNNAC 7 cut(s) 202, 280, 617, 637, 791, 980, 1078
Hpy188I TCNGA 4 cut(s) 382, 705, 1169, 1255
Hpy188III TCNNGA 5 cut(s) 356, 731, 1059, 1323, 1379
Hpy8I GTNNAC 7 cut(s) 202, 280, 617, 637, 791, 980, 1078
HpyAV CCTTC 9 cut(s) 96, 151, 343, 353, 769, 895, 899, 1021, 1080
HpyCH4III ACNGT 3 cut(s) 590, 1158, 1198
HpyCH4IV ACGT 2 cut(s) 537, 982
HpyCH4V TGCA 9 cut(s) 158, 327, 413, 546, 626, 647, 1161, 1188, 1289
HpyF3I CTNAG 3 cut(s) 266, 729, 1315
HpySE526I ACGT 2 cut(s) 537, 982
Hsp92II CATG 7 cut(s) 232, 393, 577, 694, 1127, 1175, 1214
HspAI GCGC 2 cut(s) 994, 1090
Kpn2I TCCGGA 1 cut(s) 1322
Ksp22I TGATCA 2 cut(s) 1261, 1348
Kzo9I GATC 9 cut(s) 649, 700, 808, 934, 1106, 1143, 1261, 1348, 1428
LmnI GCTCC 1 cut(s) 1325
Lsp1109I GCAGC 3 cut(s) 142, 1286, 1301
LweI GCATC 2 cut(s) 201, 568
MaeI CTAG 4 cut(s) 446, 612, 1271, 1389
MaeII ACGT 2 cut(s) 537, 982
MaeIII GTNAC 2 cut(s) 19, 317
MalI GATC 9 cut(s) 651, 702, 810, 936, 1108, 1145, 1263, 1350, 1430
MboI GATC 9 cut(s) 649, 700, 808, 934, 1106, 1143, 1261, 1348, 1428
MfeI CAATTG 1 cut(s) 1189
MflI RGATCY 2 cut(s) 934, 1106
MlyI GAGTC 3 cut(s) 27, 827, 1346
MroI TCCGGA 1 cut(s) 1322
MseI TTAA 5 cut(s) 249, 741, 749, 1425, 1453
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 3 cut(s) 155, 270, 1277
MspCI CTTAAG 1 cut(s) 740
MspI CCGG 4 cut(s) 315, 1323, 1421, 1442
MspR9I CCNGG 3 cut(s) 1002, 1012, 1301
MunI CAATTG 1 cut(s) 1189
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 3 cut(s) 1002, 1012, 1301
NcoI CCATGG 1 cut(s) 389
NdeII GATC 9 cut(s) 649, 700, 808, 934, 1106, 1143, 1261, 1348, 1428
NlaIII CATG 7 cut(s) 232, 393, 577, 694, 1127, 1175, 1214
NlaIV GGNNCC 3 cut(s) 1009, 1108, 1321
NmuCI GTSAC 2 cut(s) 19, 317
PcsI WCGNNNNNNNCGW 1 cut(s) 517
PctI GAATGC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 665
PflFI GACNNNGTC 1 cut(s) 692
PinAI ACCGGT 1 cut(s) 1420
PkrI GCNGC 6 cut(s) 157, 272, 313, 444, 1276, 1291
PleI GAGTC 3 cut(s) 26, 827, 1345
PpsI GAGTC 3 cut(s) 26, 827, 1345
PpuMI RGGWCCY 1 cut(s) 1007
Psp5II RGGWCCY 1 cut(s) 1007
Psp6I CCWGG 3 cut(s) 1000, 1010, 1299
PspFI CCCAGC 1 cut(s) 1135
PspGI CCWGG 3 cut(s) 1000, 1010, 1299
PspN4I GGNNCC 3 cut(s) 1009, 1108, 1321
PspPI GGNCC 4 cut(s) 733, 1007, 1175, 1267
PspPPI RGGWCCY 1 cut(s) 1007
PstI CTGCAG 1 cut(s) 649
PsuI RGATCY 2 cut(s) 934, 1106
PsyI GACNNNGTC 1 cut(s) 692
RsaI GTAC 3 cut(s) 456, 1195, 1369
RsaNI GTAC 3 cut(s) 455, 1194, 1368
RseI CAYNNNNRTG 1 cut(s) 26
SalI GTCGAC 1 cut(s) 278
SaqAI TTAA 5 cut(s) 249, 741, 749, 1425, 1453
SatI GCNGC 6 cut(s) 156, 271, 312, 443, 1275, 1290
Sau3AI GATC 9 cut(s) 649, 700, 808, 934, 1106, 1143, 1261, 1348, 1428
Sau96I GGNCC 4 cut(s) 733, 1007, 1175, 1267
SchI GAGTC 3 cut(s) 27, 827, 1346
ScrFI CCNGG 3 cut(s) 1002, 1012, 1301
SfaNI GCATC 2 cut(s) 201, 568
SfcI CTRYAG 2 cut(s) 645, 1154
SinI GGWCC 2 cut(s) 733, 1007
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 2 cut(s) 740, 837
SmoI CTYRAG 2 cut(s) 740, 837
SsiI CCGC 8 cut(s) 153, 270, 273, 298, 312, 330, 443, 1277
SspI AATATT 2 cut(s) 473, 753
SspMI CTAG 4 cut(s) 446, 612, 1271, 1389
StyD4I CCNGG 3 cut(s) 1000, 1010, 1299
StyI CCWWGG 2 cut(s) 389, 940
TaaI ACNGT 3 cut(s) 590, 1158, 1198
TaiI ACGT 2 cut(s) 540, 985
TaqI TCGA 6 cut(s) 16, 279, 511, 773, 952, 1180
TaqII GACCGA 1 cut(s) 965
TatI WGTACW 2 cut(s) 454, 1367
TauI GCSGC 3 cut(s) 273, 314, 445
TfiI GAWTC 1 cut(s) 665
Tru1I TTAA 5 cut(s) 249, 741, 749, 1425, 1453
Tru9I TTAA 5 cut(s) 249, 741, 749, 1425, 1453
TscAI CASTG 3 cut(s) 292, 877, 1163
TseFI GTSAC 2 cut(s) 19, 317
TseI GCWGC 3 cut(s) 155, 1274, 1289
Tsp45I GTSAC 2 cut(s) 19, 317
TspDTI ATGAA 4 cut(s) 17, 483, 562, 1242
TspGWI ACGGA 1 cut(s) 671
TspRI CASTG 3 cut(s) 292, 877, 1163
Tth111I GACNNNGTC 1 cut(s) 692
Vha464I CTTAAG 1 cut(s) 740
VpaK11BI GGWCC 2 cut(s) 733, 1007
XapI RAATTY 5 cut(s) 345, 560, 843, 875, 1433
XcmI CCANNNNNNNNNTGG 2 cut(s) 589, 1008
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 4 cut(s) 446, 612, 1271, 1389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.