tRNA-specific 2-thiouridylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G51310 |
| fragaria_vesca | FvH4_5g33050 FvH4_5g33050 FvH4_5g33050 |
| malus_domestica | MD03G1176400.v1.1 MD11G1196700.v1.1 |
| prunus_persica | Prupe.5G028600_v2.0.a1 Prupe.5G028600_v2.0.a1 |
| pyrus_communis | pycom03g13370 pycom11g16970 |
| rosa_chinensis | RchiOBHm_Chr7g0231131 |
| rosa_laevigata | RLG00000001432 |
| rosa_multiflora | Rmu_co8502733.1_g000001 Rmu_sc0012403.1_g000009 |
| rosa_roxburghii | Rroxscaffold_1G00030590 Rroxscaffold_5G00347570 |
| rosa_rugosa | Rorug07G0264900 |
| rosa_samantha | Rh7AG417700 Rh7BG393900 Rh7CG437700 Rh7DG411700 |
| rosa_wichuraiana | Rw7G034590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 344 |
| AclWI | GGATC | 1 cut(s) | 135 |
| AcsI | RAATTY | 2 cut(s) | 270, 311 |
| AgsI | TTSAA | 1 cut(s) | 449 |
| AluBI | AGCT | 1 cut(s) | 166 |
| AluI | AGCT | 1 cut(s) | 166 |
| AlwI | GGATC | 1 cut(s) | 135 |
| Ama87I | CYCGRG | 1 cut(s) | 156 |
| ApeKI | GCWGC | 1 cut(s) | 386 |
| ApoI | RAATTY | 2 cut(s) | 270, 311 |
| AseI | ATTAAT | 1 cut(s) | 176 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 259 |
| AspLEI | GCGC | 1 cut(s) | 345 |
| AspS9I | GGNCC | 1 cut(s) | 160 |
| AsuHPI | GGTGA | 2 cut(s) | 133, 377 |
| AvaI | CYCGRG | 1 cut(s) | 156 |
| AvaII | GGWCC | 1 cut(s) | 160 |
| BbsI | GAAGAC | 1 cut(s) | 120 |
| BbvI | GCAGC | 1 cut(s) | 373 |
| BccI | CCATC | 2 cut(s) | 17, 76 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 404, 438 |
| BfmI | CTRYAG | 1 cut(s) | 72 |
| BisI | GCNGC | 1 cut(s) | 387 |
| BlsI | GCNGC | 1 cut(s) | 388 |
| Bme18I | GGWCC | 1 cut(s) | 160 |
| BmeT110I | CYCGRG | 1 cut(s) | 156 |
| BmgT120I | GGNCC | 1 cut(s) | 160 |
| BmiI | GGNNCC | 1 cut(s) | 161 |
| BoxI | GACNNNNGTC | 1 cut(s) | 405 |
| BpiI | GAAGAC | 1 cut(s) | 120 |
| Bse3DI | GCAATG | 1 cut(s) | 432 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseMI | GCAATG | 1 cut(s) | 432 |
| BseXI | GCAGC | 1 cut(s) | 373 |
| BsiHKCI | CYCGRG | 1 cut(s) | 156 |
| BslFI | GGGAC | 2 cut(s) | 173, 336 |
| BsmFI | GGGAC | 2 cut(s) | 173, 336 |
| BsmI | GAATGC | 1 cut(s) | 389 |
| BsoBI | CYCGRG | 1 cut(s) | 156 |
| Bsp143I | GATC | 3 cut(s) | 76, 127, 235 |
| BspLI | GGNNCC | 1 cut(s) | 161 |
| BspMAI | CTGCAG | 1 cut(s) | 76 |
| BspPI | GGATC | 1 cut(s) | 135 |
| BsrDI | GCAATG | 1 cut(s) | 432 |
| BssMI | GATC | 3 cut(s) | 76, 127, 235 |
| Bst4CI | ACNGT | 1 cut(s) | 331 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstHHI | GCGC | 1 cut(s) | 345 |
| BstKTI | GATC | 3 cut(s) | 79, 130, 238 |
| BstMBI | GATC | 3 cut(s) | 76, 127, 235 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 405 |
| BstSFI | CTRYAG | 1 cut(s) | 72 |
| BstV1I | GCAGC | 1 cut(s) | 373 |
| BstV2I | GAAGAC | 1 cut(s) | 120 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| CfoI | GCGC | 1 cut(s) | 345 |
| Cfr13I | GGNCC | 1 cut(s) | 160 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 214, 249 |
| CviAII | CATG | 2 cut(s) | 118, 455 |
| CviJI | RGCY | 3 cut(s) | 166, 386, 464 |
| CviKI_1 | RGCY | 3 cut(s) | 166, 386, 464 |
| DpnI | GATC | 3 cut(s) | 78, 129, 237 |
| DpnII | GATC | 3 cut(s) | 76, 127, 235 |
| Eco47I | GGWCC | 1 cut(s) | 160 |
| Eco88I | CYCGRG | 1 cut(s) | 156 |
| FaeI | CATG | 2 cut(s) | 121, 458 |
| FaiI | YATR | 8 cut(s) | 20, 33, 51, 119, 136, 170, 363, 456 |
| FaqI | GGGAC | 2 cut(s) | 173, 336 |
| FatI | CATG | 2 cut(s) | 117, 454 |
| Fnu4HI | GCNGC | 1 cut(s) | 387 |
| FokI | GGATG | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 1 cut(s) | 387 |
| FspI | TGCGCA | 1 cut(s) | 344 |
| GlaI | GCGC | 1 cut(s) | 344 |
| GluI | GCNGC | 1 cut(s) | 387 |
| HhaI | GCGC | 1 cut(s) | 345 |
| Hin1II | CATG | 2 cut(s) | 121, 458 |
| Hin6I | GCGC | 1 cut(s) | 343 |
| HinP1I | GCGC | 1 cut(s) | 343 |
| HincII | GTYRAC | 1 cut(s) | 400 |
| HindII | GTYRAC | 1 cut(s) | 400 |
| HinfI | GANTC | 3 cut(s) | 92, 260, 406 |
| HphI | GGTGA | 2 cut(s) | 133, 377 |
| Hpy166II | GTNNAC | 4 cut(s) | 44, 64, 218, 400 |
| Hpy188I | TCNGA | 2 cut(s) | 112, 132 |
| Hpy188III | TCNNGA | 1 cut(s) | 158 |
| Hpy8I | GTNNAC | 4 cut(s) | 44, 64, 218, 400 |
| HpyAV | CCTTC | 3 cut(s) | 118, 365, 454 |
| HpyCH4III | ACNGT | 1 cut(s) | 331 |
| HpyCH4V | TGCA | 6 cut(s) | 38, 53, 74, 389, 437, 469 |
| Hsp92II | CATG | 2 cut(s) | 121, 458 |
| HspAI | GCGC | 1 cut(s) | 343 |
| Kzo9I | GATC | 3 cut(s) | 76, 127, 235 |
| LpnPI | CCDG | 2 cut(s) | 176, 411 |
| Lsp1109I | GCAGC | 1 cut(s) | 373 |
| MalI | GATC | 3 cut(s) | 78, 129, 237 |
| MboI | GATC | 3 cut(s) | 76, 127, 235 |
| MboII | GAAGA | 1 cut(s) | 125 |
| MluCI | AATT | 3 cut(s) | 270, 311, 470 |
| MlyI | GAGTC | 1 cut(s) | 415 |
| MnlI | CCTC | 5 cut(s) | 327, 345, 384, 409, 479 |
| MroXI | GAANNNNTTC | 1 cut(s) | 259 |
| MseI | TTAA | 4 cut(s) | 176, 326, 420, 490 |
| Mva1269I | GAATGC | 1 cut(s) | 389 |
| NdeII | GATC | 3 cut(s) | 76, 127, 235 |
| NlaIII | CATG | 2 cut(s) | 121, 458 |
| NlaIV | GGNNCC | 1 cut(s) | 161 |
| NsbI | TGCGCA | 1 cut(s) | 344 |
| PctI | GAATGC | 1 cut(s) | 389 |
| PdmI | GAANNNNTTC | 1 cut(s) | 259 |
| PfeI | GAWTC | 2 cut(s) | 92, 260 |
| PkrI | GCNGC | 1 cut(s) | 388 |
| PleI | GAGTC | 1 cut(s) | 414 |
| PpsI | GAGTC | 1 cut(s) | 414 |
| PshAI | GACNNNNGTC | 1 cut(s) | 405 |
| PshBI | ATTAAT | 1 cut(s) | 176 |
| PspN4I | GGNNCC | 1 cut(s) | 161 |
| PspPI | GGNCC | 1 cut(s) | 160 |
| PstI | CTGCAG | 1 cut(s) | 76 |
| SaqAI | TTAA | 4 cut(s) | 176, 326, 420, 490 |
| SatI | GCNGC | 1 cut(s) | 387 |
| Sau3AI | GATC | 3 cut(s) | 76, 127, 235 |
| Sau96I | GGNCC | 1 cut(s) | 160 |
| SchI | GAGTC | 1 cut(s) | 415 |
| SetI | ASST | 4 cut(s) | 168, 326, 420, 490 |
| SfcI | CTRYAG | 1 cut(s) | 72 |
| SinI | GGWCC | 1 cut(s) | 160 |
| Sse9I | AATT | 3 cut(s) | 270, 311, 470 |
| SspI | AATATT | 1 cut(s) | 180 |
| TaaI | ACNGT | 1 cut(s) | 331 |
| TasI | AATT | 3 cut(s) | 270, 311, 470 |
| TfiI | GAWTC | 2 cut(s) | 92, 260 |
| Tru1I | TTAA | 4 cut(s) | 176, 326, 420, 490 |
| Tru9I | TTAA | 4 cut(s) | 176, 326, 420, 490 |
| TseI | GCWGC | 1 cut(s) | 386 |
| VpaK11BI | GGWCC | 1 cut(s) | 160 |
| VspI | ATTAAT | 1 cut(s) | 176 |
| XapI | RAATTY | 2 cut(s) | 270, 311 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 16 |
| XmnI | GAANNNNTTC | 1 cut(s) | 259 |