pycom03g13370

tRNA-specific 2-thiouridylase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
14376863 .. 14382596
5734 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g13370.4

Sequence Viewer

Length: 1383 bp
ATGGCGAGAGTAATACCAGTGGCTATGGCGGCCTCTTTACTCCCCCACATCACTTCCCTCTCTCTCCCTCTCAAGCCCTATCTCTCGCTGACAAGTCTCCTCTTCCTCAAACCCTTCTCTCGCTCGTGCGCCGACAGCTCCCCCCGCTCCGTCAACTGCTTCGCCGTTCCCCAAACTCCACGCCCTCCAAACAGCTTGAATGGAGATGTTGGCCCTTACTTGTCCTGTTCTATGCCTCATCAGAGCCTTAAAGTCGCCGTCTTGCTTAGCGGCGGTGTCGATAGCAGTGTCGCCCTCCGCCTCCTCCATGCCGCCGGTCACTCCTGCACCGCCTTCTACCTCAAAATTTGGTTCCAAGAAGACTTTGAGAACTTTTGGTCAGAATGCCCATGGGAAGAAGATTTGAAGTATGCAAATGCTGTCTGCAATCAGGTTGATGTCCCACTCGAAGTCGTGCATTTGACGGATGAATATTGGAAGAATGTGGTATCCTACATTATTGAAGAGTATCAATGTGGCAGAACTCCTAACCCAGATGTTCTTTGCAATACAAGAATAAAGTTTGGTTCATTCATGGATGCCATCAGCAGTATGAAGTTTGATCGTGTGGCATCTGGGCATTACGCAAATGTTGTCCACCCACCTGCAAGTCAAACGGACAAGGATTCGGTTCTAGAACTATCACAAGATATGGTGAAGGATCAGACATACTTCCTTTCACATCTTTCTCAGGCCCAGCTTAAGAGGTTAATATTCCCACTTGGTTGTCTGTCAAAGGATGAAGTTCGCAAACTTGCAACAAAGTTTGATCTGCCTAACAAAGACAGAAAGGATTCACAAGGAATATGCTTTCTAGGGAAGATCAAGTTCAATGAATTTATCGCAAGACACATAGGGGAGAACAAAGGTGTCATATTGGAAGCTGAGTCGGGAGATTTCCTAGGAAATCATCGGGGGTTTTGGTTCTACACAATTGGTCAACGACAAGGTCTACGCCTTCCTGGAGGACCCTGGTATGTTGTTGAGAAGGATATAAAAAACAATGTAGTTTTTGTGTCAAGAAATTACTTTTCAGACGAAAAAAGAAGGCGCCTGTTTCGTGTTGGCTCCTTGAAATGGCTAAATGGTCTGCCCCCAAACCAGATCAGTCAGCTAGAGTGTAAGGTTAGGCATGGGCCTGCTTTTTGTAATTGTAGCTTAATAATGGAACCCGGTGAAGATGGTCACGAAGATGTTGCAGTTGTCCATTTATCTCAAGATGATCAAGGCCTGGCAGCCGGGCAGTTTGCAGCCTTCTACCGGGGAAGAACCTGCTTGGGCTCCGGTGTAATTTTGGAGTCTTGGGATCGATCAAGGTTTTCCCGTGTGTGCAAGAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

461

Amino Acids

51.64

Weight (kDa)

8.11

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 652
Acc36I ACCTGC 2 cut(s) 652, 1319
AccB1I GGYRCC 1 cut(s) 1089
AccBSI CCGCTC 1 cut(s) 147
AccI GTMKAC 1 cut(s) 991
AciI CCGC 7 cut(s) 29, 145, 270, 273, 298, 312, 330
AclWI GGATC 2 cut(s) 708, 1353
AcsI RAATTY 2 cut(s) 345, 875
AcyI GRCGYC 1 cut(s) 1090
AfiI CCNNNNNNNGG 2 cut(s) 1116, 1299
AflII CTTAAG 1 cut(s) 740
AgsI TTSAA 5 cut(s) 199, 406, 503, 871, 1114
AjnI CCWGG 3 cut(s) 1000, 1010, 1269
AluBI AGCT 6 cut(s) 138, 195, 739, 923, 1153, 1197
AluI AGCT 6 cut(s) 138, 195, 739, 923, 1153, 1197
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 2 cut(s) 708, 1353
AoxI GGCC 5 cut(s) 30, 211, 732, 1175, 1267
ApeKI GCWGC 2 cut(s) 1274, 1289
ApoI RAATTY 2 cut(s) 345, 875
Asp700I GAANNNNTTC 1 cut(s) 832
AspA2I CCTAGG 1 cut(s) 940
AspLEI GCGC 2 cut(s) 131, 1092
AspS9I GGNCC 4 cut(s) 212, 733, 1007, 1175
AsuC2I CCSGG 3 cut(s) 1212, 1279, 1301
AsuHPI GGTGA 2 cut(s) 706, 1226
AvaII GGWCC 1 cut(s) 1007
AvrII CCTAGG 1 cut(s) 940
BanI GGYRCC 1 cut(s) 1089
BanII GRGCYC 2 cut(s) 1322, 1379
BauI CACGAG 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 1286, 1301
BccI CCATC 2 cut(s) 590, 1214
BceAI ACGGC 2 cut(s) 149, 242
BcgI CGANNNNNNTGC 2 cut(s) 1217, 1251
BciT130I CCWGG 3 cut(s) 1002, 1012, 1271
BciVI GTATCC 1 cut(s) 499
BclI TGATCA 1 cut(s) 1261
BcnI CCSGG 3 cut(s) 1212, 1279, 1301
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 4 cut(s) 674, 854, 941, 1154
BfoI RGCGCY 1 cut(s) 1093
BfrI CTTAAG 1 cut(s) 740
BfuAI ACCTGC 2 cut(s) 652, 1319
BfuI GTATCC 1 cut(s) 499
BisI GCNGC 5 cut(s) 30, 271, 312, 1275, 1290
BlnI CCTAGG 1 cut(s) 940
BlpI GCTNAGC 1 cut(s) 266
BlsI GCNGC 5 cut(s) 31, 272, 313, 1276, 1291
Bme1390I CCNGG 6 cut(s) 1002, 1012, 1212, 1271, 1279, 1301
Bme18I GGWCC 1 cut(s) 1007
BmgT120I GGNCC 4 cut(s) 212, 733, 1007, 1175
BmiI GGNNCC 6 cut(s) 353, 1009, 1091, 1108, 1209, 1321
BmrFI CCNGG 6 cut(s) 1002, 1012, 1212, 1271, 1279, 1301
BmsI GCATC 2 cut(s) 568, 620
BpiI GAAGAC 1 cut(s) 366
BpmI CTGGAG 1 cut(s) 1023
Bpu1102I GCTNAGC 1 cut(s) 266
BpuEI CTTGAG 2 cut(s) 56, 1239
BpuMI CCSGG 3 cut(s) 1212, 1279, 1301
Bsa29I ATCGAT 1 cut(s) 1348
BsaHI GRCGYC 1 cut(s) 1090
BsaJI CCNNGG 4 cut(s) 389, 940, 1010, 1300
BsaWI WCCGGW 1 cut(s) 1322
Bsc4I CCNNNNNNNGG 2 cut(s) 1116, 1299
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 3 cut(s) 1002, 1012, 1271
BseCI ATCGAT 1 cut(s) 1348
BseDI CCNNGG 4 cut(s) 389, 940, 1010, 1300
BseGI GGATG 3 cut(s) 472, 583, 784
BseLI CCNNNNNNNGG 2 cut(s) 1116, 1299
BseMII CTCAG 2 cut(s) 743, 915
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 2 cut(s) 89, 293
BseXI GCAGC 2 cut(s) 1286, 1301
BseYI CCCAGC 1 cut(s) 735
BsgI GTGCAG 1 cut(s) 310
BshFI GGCC 5 cut(s) 32, 213, 734, 1177, 1269
BshNI GGYRCC 1 cut(s) 1089
BshVI ATCGAT 1 cut(s) 1348
BsiSI CCGG 5 cut(s) 315, 1212, 1278, 1300, 1323
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 2 cut(s) 1116, 1299
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 5 cut(s) 32, 213, 734, 1177, 1269
Bsp1286I GDGCHC 2 cut(s) 1322, 1379
Bsp143I GATC 8 cut(s) 601, 700, 808, 861, 1143, 1261, 1345, 1349
Bsp1720I GCTNAGC 1 cut(s) 266
Bsp19I CCATGG 1 cut(s) 389
BspACI CCGC 7 cut(s) 29, 145, 270, 273, 298, 312, 330
BspANI GGCC 5 cut(s) 32, 213, 734, 1177, 1269
BspCNI CTCAG 2 cut(s) 742, 916
BspDI ATCGAT 1 cut(s) 1348
BspLI GGNNCC 6 cut(s) 353, 1009, 1091, 1108, 1209, 1321
BspMI ACCTGC 2 cut(s) 652, 1319
BspPI GGATC 2 cut(s) 708, 1353
BspT107I GGYRCC 1 cut(s) 1089
BspTI CTTAAG 1 cut(s) 740
BsrBI CCGCTC 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 4 cut(s) 389, 940, 1010, 1300
BssMI GATC 8 cut(s) 601, 700, 808, 861, 1143, 1261, 1345, 1349
BssNI GRCGYC 1 cut(s) 1090
BssSI CACGAG 1 cut(s) 124
BssT1I CCWWGG 2 cut(s) 389, 940
Bst2BI CACGAG 1 cut(s) 124
Bst2UI CCWGG 3 cut(s) 1002, 1012, 1271
Bst6I CTCTTC 2 cut(s) 107, 498
BstACI GRCGYC 1 cut(s) 1090
BstAFI CTTAAG 1 cut(s) 740
BstC8I GCNNGC 1 cut(s) 1179
BstDEI CTNAG 3 cut(s) 266, 729, 924
BstDSI CCRYGG 1 cut(s) 389
BstF5I GGATG 3 cut(s) 472, 583, 784
BstH2I RGCGCY 1 cut(s) 1093
BstHHI GCGC 2 cut(s) 131, 1092
BstKTI GATC 8 cut(s) 604, 703, 811, 864, 1146, 1264, 1348, 1352
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 8 cut(s) 601, 700, 808, 861, 1143, 1261, 1345, 1349
BstMWI GCNNNNNNNGC 3 cut(s) 29, 135, 144
BstNI CCWGG 3 cut(s) 1002, 1012, 1271
BstSCI CCNGG 6 cut(s) 1000, 1010, 1210, 1269, 1277, 1299
BstV1I GCAGC 2 cut(s) 1286, 1301
BstV2I GAAGAC 1 cut(s) 366
Bsu15I ATCGAT 1 cut(s) 1348
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 5 cut(s) 32, 213, 734, 1177, 1269
BsuTUI ATCGAT 1 cut(s) 1348
BtgI CCRYGG 1 cut(s) 389
BtsCI GGATG 3 cut(s) 472, 583, 784
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 2 cut(s) 24, 292
BveI ACCTGC 2 cut(s) 652, 1319
Cac8I GCNNGC 1 cut(s) 1179
CfoI GCGC 2 cut(s) 131, 1092
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 4 cut(s) 212, 733, 1007, 1175
ClaI ATCGAT 1 cut(s) 1348
CviAII CATG 4 cut(s) 308, 390, 574, 1172
DdeI CTNAG 3 cut(s) 266, 729, 924
DinI GGCGCC 1 cut(s) 1091
DpnI GATC 8 cut(s) 603, 702, 810, 863, 1145, 1263, 1347, 1351
DpnII GATC 8 cut(s) 601, 700, 808, 861, 1143, 1261, 1345, 1349
Eam1104I CTCTTC 2 cut(s) 107, 498
EarI CTCTTC 2 cut(s) 107, 498
EciI GGCGGA 1 cut(s) 287
Eco130I CCWWGG 2 cut(s) 389, 940
Eco147I AGGCCT 1 cut(s) 1269
Eco24I GRGCYC 2 cut(s) 1322, 1379
Eco47I GGWCC 1 cut(s) 1007
EcoO109I RGGNCCY 1 cut(s) 1007
EcoRII CCWGG 3 cut(s) 1000, 1010, 1269
EcoT14I CCWWGG 2 cut(s) 389, 940
EcoT38I GRGCYC 2 cut(s) 1322, 1379
EgeI GGCGCC 1 cut(s) 1091
EheI GGCGCC 1 cut(s) 1091
ErhI CCWWGG 2 cut(s) 389, 940
FaeI CATG 4 cut(s) 311, 393, 577, 1175
FaqI GGGAC 1 cut(s) 425
FatI CATG 4 cut(s) 307, 389, 573, 1171
FauI CCCGC 1 cut(s) 152
FbaI TGATCA 1 cut(s) 1261
FblI GTMKAC 1 cut(s) 991
Fnu4HI GCNGC 5 cut(s) 30, 271, 312, 1275, 1290
FokI GGATG 3 cut(s) 479, 590, 791
FriOI GRGCYC 2 cut(s) 1322, 1379
Fsp4HI GCNGC 5 cut(s) 30, 271, 312, 1275, 1290
FspBI CTAG 4 cut(s) 674, 854, 941, 1154
GlaI GCGC 2 cut(s) 130, 1091
GluI GCNGC 5 cut(s) 30, 271, 312, 1275, 1290
GsaI CCCAGC 1 cut(s) 739
GsuI CTGGAG 1 cut(s) 1023
HaeII RGCGCY 1 cut(s) 1093
HaeIII GGCC 5 cut(s) 32, 213, 734, 1177, 1269
HapII CCGG 5 cut(s) 315, 1212, 1278, 1300, 1323
HhaI GCGC 2 cut(s) 131, 1092
Hin1I GRCGYC 1 cut(s) 1090
Hin1II CATG 4 cut(s) 311, 393, 577, 1175
Hin6I GCGC 2 cut(s) 129, 1090
HinP1I GCGC 2 cut(s) 129, 1090
HincII GTYRAC 2 cut(s) 154, 980
HindII GTYRAC 2 cut(s) 154, 980
HinfI GANTC 4 cut(s) 665, 833, 926, 1337
HpaII CCGG 5 cut(s) 315, 1212, 1278, 1300, 1323
HphI GGTGA 2 cut(s) 706, 1226
Hpy166II GTNNAC 4 cut(s) 154, 637, 980, 992
Hpy188I TCNGA 4 cut(s) 243, 382, 705, 1075
Hpy188III TCNNGA 5 cut(s) 674, 930, 1059, 1226, 1256
Hpy8I GTNNAC 4 cut(s) 154, 637, 980, 992
HpyAV CCTTC 7 cut(s) 124, 343, 691, 1007, 1021, 1080, 1303
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 135, 144
HpyF3I CTNAG 3 cut(s) 266, 729, 924
Hsp92I GRCGYC 1 cut(s) 1090
Hsp92II CATG 4 cut(s) 311, 393, 577, 1175
HspAI GCGC 2 cut(s) 129, 1090
KasI GGCGCC 1 cut(s) 1089
Ksp22I TGATCA 1 cut(s) 1261
Kzo9I GATC 8 cut(s) 601, 700, 808, 861, 1143, 1261, 1345, 1349
LmnI GCTCC 4 cut(s) 143, 152, 1112, 1325
Lsp1109I GCAGC 2 cut(s) 1286, 1301
LweI GCATC 2 cut(s) 568, 620
MaeI CTAG 4 cut(s) 674, 854, 941, 1154
MaeIII GTNAC 2 cut(s) 317, 1223
MalI GATC 8 cut(s) 603, 702, 810, 863, 1145, 1263, 1347, 1351
MbiI CCGCTC 1 cut(s) 147
MboI GATC 8 cut(s) 601, 700, 808, 861, 1143, 1261, 1345, 1349
MfeI CAATTG 1 cut(s) 972
MhlI GDGCHC 2 cut(s) 1322, 1379
MluCI AATT 6 cut(s) 345, 875, 972, 1063, 1189, 1329
Mly113I GGCGCC 1 cut(s) 1090
MlyI GAGTC 2 cut(s) 935, 1346
MroXI GAANNNNTTC 1 cut(s) 832
MseI TTAA 4 cut(s) 249, 741, 749, 1199
MslI CAYNNNNRTG 1 cut(s) 1230
MspCI CTTAAG 1 cut(s) 740
MspI CCGG 5 cut(s) 315, 1212, 1278, 1300, 1323
MspR9I CCNGG 6 cut(s) 1002, 1012, 1212, 1271, 1279, 1301
MunI CAATTG 1 cut(s) 972
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 3 cut(s) 1002, 1012, 1271
MwoI GCNNNNNNNGC 3 cut(s) 29, 135, 144
NarI GGCGCC 1 cut(s) 1090
NciI CCSGG 3 cut(s) 1212, 1279, 1301
NcoI CCATGG 1 cut(s) 389
NdeII GATC 8 cut(s) 601, 700, 808, 861, 1143, 1261, 1345, 1349
NlaIII CATG 4 cut(s) 311, 393, 577, 1175
NlaIV GGNNCC 6 cut(s) 353, 1009, 1091, 1108, 1209, 1321
NmuCI GTSAC 2 cut(s) 317, 1223
PaqCI CACCTGC 1 cut(s) 652
PceI AGGCCT 1 cut(s) 1269
PctI GAATGC 1 cut(s) 389
PdmI GAANNNNTTC 1 cut(s) 832
PfeI GAWTC 2 cut(s) 665, 833
PflFI GACNNNGTC 1 cut(s) 987
PfoI TCCNGGA 1 cut(s) 1000
PkrI GCNGC 5 cut(s) 31, 272, 313, 1276, 1291
PleI GAGTC 2 cut(s) 934, 1345
PluTI GGCGCC 1 cut(s) 1093
PpsI GAGTC 2 cut(s) 934, 1345
PpuMI RGGWCCY 1 cut(s) 1007
Psp5II RGGWCCY 1 cut(s) 1007
Psp6I CCWGG 3 cut(s) 1000, 1010, 1269
PspFI CCCAGC 1 cut(s) 735
PspGI CCWGG 3 cut(s) 1000, 1010, 1269
PspN4I GGNNCC 6 cut(s) 353, 1009, 1091, 1108, 1209, 1321
PspPI GGNCC 4 cut(s) 212, 733, 1007, 1175
PspPPI RGGWCCY 1 cut(s) 1007
PsyI GACNNNGTC 1 cut(s) 987
RseI CAYNNNNRTG 1 cut(s) 1230
SaqAI TTAA 4 cut(s) 249, 741, 749, 1199
SatI GCNGC 5 cut(s) 30, 271, 312, 1275, 1290
Sau3AI GATC 8 cut(s) 601, 700, 808, 861, 1143, 1261, 1345, 1349
Sau96I GGNCC 4 cut(s) 212, 733, 1007, 1175
SchI GAGTC 2 cut(s) 935, 1346
ScrFI CCNGG 6 cut(s) 1002, 1012, 1212, 1271, 1279, 1301
SduI GDGCHC 2 cut(s) 1322, 1379
SfaNI GCATC 2 cut(s) 568, 620
SfoI GGCGCC 1 cut(s) 1091
SinI GGWCC 1 cut(s) 1007
SmiMI CAYNNNNRTG 1 cut(s) 1230
SmlI CTYRAG 3 cut(s) 71, 740, 1254
SmoI CTYRAG 3 cut(s) 71, 740, 1254
Sse9I AATT 6 cut(s) 345, 875, 972, 1063, 1189, 1329
SseBI AGGCCT 1 cut(s) 1269
SsiI CCGC 7 cut(s) 29, 145, 270, 273, 298, 312, 330
SspDI GGCGCC 1 cut(s) 1089
SspI AATATT 2 cut(s) 473, 753
SspMI CTAG 4 cut(s) 674, 854, 941, 1154
StuI AGGCCT 1 cut(s) 1269
StyD4I CCNGG 6 cut(s) 1000, 1010, 1210, 1269, 1277, 1299
StyI CCWWGG 2 cut(s) 389, 940
TaqI TCGA 3 cut(s) 279, 447, 1348
TasI AATT 6 cut(s) 345, 875, 972, 1063, 1189, 1329
TauI GCSGC 3 cut(s) 32, 273, 314
TfiI GAWTC 2 cut(s) 665, 833
Tru1I TTAA 4 cut(s) 249, 741, 749, 1199
Tru9I TTAA 4 cut(s) 249, 741, 749, 1199
TscAI CASTG 2 cut(s) 24, 292
TseFI GTSAC 2 cut(s) 317, 1223
TseI GCWGC 2 cut(s) 1274, 1289
Tsp45I GTSAC 2 cut(s) 317, 1223
TspDTI ATGAA 6 cut(s) 483, 558, 562, 608, 795, 888
TspGWI ACGGA 3 cut(s) 139, 479, 671
TspRI CASTG 2 cut(s) 24, 292
Tth111I GACNNNGTC 1 cut(s) 987
Vha464I CTTAAG 1 cut(s) 740
VpaK11BI GGWCC 1 cut(s) 1007
XapI RAATTY 2 cut(s) 345, 875
XbaI TCTAGA 1 cut(s) 673
XmaJI CCTAGG 1 cut(s) 940
XmiI GTMKAC 1 cut(s) 991
XmnI GAANNNNTTC 1 cut(s) 832
XspI CTAG 4 cut(s) 674, 854, 941, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.