Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009292

Physical Location & Seq

Genomic Coordinates Reverse (-)

57902989 .. 57909433

Gene Structure 6445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG411700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGCTTAGAGTGACGCCAATGGCAATGACCTCTCTACTCTCCCACATCACCTCTCTTTCTCTCCCTCTCCCTCTCAAACCCCCCTCCTCCTCTCTTTTCCCTCATTCTGCAAAACCCACAAAACCCACCCTCTTCCTCAGACCCTTCTCTATCTCCTCTTCTTCTTCCTCCTCAGACCCTCCTCCACACAGCTTCAATGGAGATATTGGGCCTTACTTGTCCTGTTCCATGCCCCATAAGCGCCTTAAAGTTGCCGTCTTGCTTAGCGGCGGTGTCGATAGCAGTGTCGCCCTTCGTCTCCTCCACGCCGCCGGTCACTCCTGCACCGCCTTCTACCTCAAAATTTGGTTTCAAGAAGGCTTTGAGAACTTTTGGTCAGAATGCCCGTGGGAAGAAGATTTGGATTATGCAAAAGCTGTCTGTAATCAGGTTGATGTCCCACTAGAAGTCGTGCATTTGACAGATGAATATTGGAAAAATGTGGTGTCCTACATTATTGAAGAGTATCGATGTGGCCGAACTCCTAACCCAGACGTTCTTTGCAATACAAGAATAAAATTTGGTGTATTCATGGATGCCATCGGCAGTATGGAGTTTGACTATGTTGCAAGTGGACATTATGCAAAAGTTGTCCACCCATCTGCAGATCAAATGGATAAGGATTCTACTTTGGAACTATCAGAAGACATGGTGAAGGATCAGACATACTTCCTTTCACATCTTTCTCAGGACCAGCTTAAGAGATTAATATTTCCACTTGGTTGTCTGTCGAAGGATAAAGTTCGTAAGCTTGCCACGAAGTTTGATCTGCCTAACAAAGAGAGAAAGGATTCACAAGGAATTTGCTTTCTTGGTAAGATAAGGTTCAGTGACTTTATTGGAAGACACATAGGGGAGAAGGAAGGTGTAATATTGGAAGCAGAGACAGGAGATCTCCTTGGAAAACATCAAGGCTTTTGGTTCTATACAATCGGTCAACGTCAAGGTCTGCGGCTCCCAGGAGGACCCTGGTATGTTGTTGAGAAGGATGTAAAAAACAATGTGGTTTTTGTTTCAAGAAATTACTTTTCAGTTGACAAAAGAAGGCGCCTGTTCCGTGTGGGATCCTTGAAATGGCTACAGGGGTTGCCCTCAGACCAGATCAGTCAGCTACAGTGCAAGGTCAGACATGGGCCTCGGTTTTGCGATTGTACCTTAACAATTGAACATGGTGAAGATGGCAATGAAGATGTGGCAGTCGTCAACTTATCTGAAGATGATCAAGGCCTGGCAGCGGGGCAATTTGCGGCTTTCTACCAGGGAAGAACCTGCTTAGGCTCCGGAGTAATTTTGGAATCTTGGGATGATCAAGGTTTTCCTGTATGTACAAAAGCTCTTGAAAATGCTAGGATGGAAGACAAATCTCTTCTTGGGAAACCGGTTAAGATCAAAGTAAAACCAGAGGCTCTTGTAACGGAGTCTTGTCAAATAGATGGTCTGGAACTTCATGGAGGATCGAAAACTTCAGGAATTTCTGCTGCCAAAAAACACATGCATGTATCTCCTGGAAAAACAATCCACAGATACACATTACATTGGCTGCCAAAGTTTTGGAAGAAATGGTTGCAAATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

tRNA_Me_trans

Protein Analysis

538

Amino Acids

60.45

Weight (kDa)

8.1

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_Me_trans	PF03054	83 - 286	6.9e-78	tRNA methyl transferase HUP domain
tRNA_Me_trans_M	PF20259	291 - 353	8e-26	tRNA methyl transferase PRC-barrel domain
tRNA_Me_trans_C	PF20258	363 - 443	1.1e-16	Aminomethyltransferase beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51310
fragaria_vesca	FvH4_5g33050 FvH4_5g33050 FvH4_5g33050
malus_domestica	MD03G1176400.v1.1 MD11G1196700.v1.1
prunus_persica	Prupe.5G028600_v2.0.a1 Prupe.5G028600_v2.0.a1
pyrus_communis	pycom03g13370 pycom11g16970
rosa_chinensis	RchiOBHm_Chr7g0231131
rosa_laevigata	RLG00000001432
rosa_multiflora	Rmu_co8502733.1_g000001 Rmu_sc0012403.1_g000009
rosa_roxburghii	Rroxscaffold_1G00030590 Rroxscaffold_5G00347570
rosa_rugosa	Rorug07G0264900
rosa_samantha	Rh7AG417700 Rh7BG393900 Rh7CG437700 Rh7DG411700
rosa_wichuraiana	Rw7G034590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1316
AccB1I	GGYRCC	1 cut(s)	1086
AccIII	TCCGGA	1 cut(s)	1319
AciI	CCGC	7 cut(s)	267, 270, 309, 327, 991, 1274, 1286
AclWI	GGATC	4 cut(s)	705, 1098, 1111, 1501
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	4 cut(s)	342, 557, 840, 1509
AcuI	CTGAAG	2 cut(s)	1272, 1488
AcyI	GRCGYC	2 cut(s)	14, 1087
AfaI	GTAC	2 cut(s)	1192, 1366
AfiI	CCNNNNNNNGG	2 cut(s)	1113, 1273
AflII	CTTAAG	1 cut(s)	737
AgeI	ACCGGT	1 cut(s)	1417
AgsI	TTSAA	7 cut(s)	196, 353, 500, 1056, 1111, 1205, 1379
AjnI	CCWGG	5 cut(s)	997, 1007, 1266, 1296, 1543
AluBI	AGCT	6 cut(s)	192, 416, 736, 790, 1150, 1373
AluI	AGCT	6 cut(s)	192, 416, 736, 790, 1150, 1373
Alw26I	GTCTC	2 cut(s)	302, 917
AlwI	GGATC	4 cut(s)	705, 1098, 1111, 1501
Aor13HI	TCCGGA	1 cut(s)	1319
AoxI	GGCC	4 cut(s)	209, 514, 1172, 1264
ApeKI	GCWGC	3 cut(s)	1271, 1517, 1579
ApoI	RAATTY	4 cut(s)	342, 557, 840, 1509
ArsI	GACNNNNNNTTYG	2 cut(s)	1459, 1491
AseI	ATTAAT	1 cut(s)	746
AsiGI	ACCGGT	1 cut(s)	1417
Asp700I	GAANNNNTTC	1 cut(s)	829
AspLEI	GCGC	2 cut(s)	243, 1089
AspS9I	GGNCC	4 cut(s)	209, 730, 1004, 1172
AsuHPI	GGTGA	3 cut(s)	40, 703, 1223
AvaII	GGWCC	2 cut(s)	730, 1004
BamHI	GGATCC	1 cut(s)	1103
BanI	GGYRCC	1 cut(s)	1086
BbsI	GAAGAC	3 cut(s)	690, 889, 1401
BbvI	GCAGC	3 cut(s)	1283, 1504, 1566
BccI	CCATC	5 cut(s)	587, 646, 1211, 1384, 1466
BceAI	ACGGC	1 cut(s)	239
BciT130I	CCWGG	5 cut(s)	999, 1009, 1268, 1298, 1545
BclI	TGATCA	2 cut(s)	1258, 1345
BcoDI	GTCTC	2 cut(s)	302, 917
BfaI	CTAG	2 cut(s)	443, 1386
BfmI	CTRYAG	3 cut(s)	642, 1118, 1151
BfoI	RGCGCY	2 cut(s)	244, 1090
BfrI	CTTAAG	1 cut(s)	737
BfuAI	ACCTGC	1 cut(s)	1316
BglII	AGATCT	1 cut(s)	931
BisI	GCNGC	7 cut(s)	268, 309, 992, 1272, 1287, 1518, 1580
BlpI	GCTNAGC	1 cut(s)	263
BlsI	GCNGC	7 cut(s)	269, 310, 993, 1273, 1288, 1519, 1581
Bme1390I	CCNGG	5 cut(s)	999, 1009, 1268, 1298, 1545
Bme18I	GGWCC	2 cut(s)	730, 1004
BmgT120I	GGNCC	4 cut(s)	209, 730, 1004, 1172
BmiI	GGNNCC	5 cut(s)	995, 1006, 1088, 1105, 1318
BmrFI	CCNGG	5 cut(s)	999, 1009, 1268, 1298, 1545
BmsI	GCATC	1 cut(s)	565
BpiI	GAAGAC	3 cut(s)	690, 889, 1401
Bpu10I	CCTNAGC	1 cut(s)	1312
Bpu1102I	GCTNAGC	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	508
BsaHI	GRCGYC	2 cut(s)	14, 1087
BsaJI	CCNNGG	6 cut(s)	386, 937, 997, 1007, 1175, 1297
BsaWI	WCCGGW	2 cut(s)	1319, 1417
Bsc4I	CCNNNNNNNGG	2 cut(s)	1113, 1273
Bse118I	RCCGGY	2 cut(s)	311, 1417
Bse3DI	GCAATG	2 cut(s)	30, 1228
BseAI	TCCGGA	1 cut(s)	1319
BseBI	CCWGG	5 cut(s)	999, 1009, 1268, 1298, 1545
BseCI	ATCGAT	1 cut(s)	508
BseDI	CCNNGG	6 cut(s)	386, 937, 997, 1007, 1175, 1297
BseGI	GGATG	4 cut(s)	580, 1033, 1348, 1395
BseLI	CCNNNNNNNGG	2 cut(s)	1113, 1273
BseMI	GCAATG	2 cut(s)	30, 1228
BseMII	CTCAG	4 cut(s)	151, 186, 740, 1146
BseRI	GAGGAG	6 cut(s)	76, 79, 145, 160, 171, 290
BseXI	GCAGC	3 cut(s)	1283, 1504, 1566
BsgI	GTGCAG	1 cut(s)	307
BshFI	GGCC	4 cut(s)	211, 516, 1174, 1266
BshNI	GGYRCC	1 cut(s)	1086
BshTI	ACCGGT	1 cut(s)	1417
BshVI	ATCGAT	1 cut(s)	508
BsiSI	CCGG	3 cut(s)	312, 1320, 1418
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	2 cut(s)	1113, 1273
BsmAI	GTCTC	2 cut(s)	302, 917
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	4 cut(s)	211, 516, 1174, 1266
Bsp13I	TCCGGA	1 cut(s)	1319
Bsp1407I	TGTACA	1 cut(s)	1364
Bsp1720I	GCTNAGC	1 cut(s)	263
BspACI	CCGC	7 cut(s)	267, 270, 309, 327, 991, 1274, 1286
BspANI	GGCC	4 cut(s)	211, 516, 1174, 1266
BspCNI	CTCAG	4 cut(s)	150, 185, 739, 1145
BspDI	ATCGAT	1 cut(s)	508
BspEI	TCCGGA	1 cut(s)	1319
BspLI	GGNNCC	5 cut(s)	995, 1006, 1088, 1105, 1318
BspMAI	CTGCAG	1 cut(s)	646
BspMI	ACCTGC	1 cut(s)	1316
BspPI	GGATC	4 cut(s)	705, 1098, 1111, 1501
BspT107I	GGYRCC	1 cut(s)	1086
BspTI	CTTAAG	1 cut(s)	737
BsrDI	GCAATG	2 cut(s)	30, 1228
BsrFI	RCCGGY	2 cut(s)	311, 1417
BsrGI	TGTACA	1 cut(s)	1364
BssAI	RCCGGY	2 cut(s)	311, 1417
BssECI	CCNNGG	6 cut(s)	386, 937, 997, 1007, 1175, 1297
BssNI	GRCGYC	2 cut(s)	14, 1087
BssT1I	CCWWGG	1 cut(s)	937
Bst2UI	CCWGG	5 cut(s)	999, 1009, 1268, 1298, 1545
Bst4CI	ACNGT	1 cut(s)	1155
Bst6I	CTCTTC	4 cut(s)	137, 163, 495, 1410
BstACI	GRCGYC	2 cut(s)	14, 1087
BstAFI	CTTAAG	1 cut(s)	737
BstAUI	TGTACA	1 cut(s)	1364
BstC8I	GCNNGC	1 cut(s)	792
BstDEI	CTNAG	7 cut(s)	5, 137, 172, 263, 726, 1132, 1312
BstDSI	CCRYGG	1 cut(s)	386
BstF5I	GGATG	4 cut(s)	580, 1033, 1348, 1395
BstH2I	RGCGCY	2 cut(s)	244, 1090
BstHHI	GCGC	2 cut(s)	243, 1089
BstMAI	GTCTC	2 cut(s)	302, 917
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNI	CCWGG	5 cut(s)	999, 1009, 1268, 1298, 1545
BstNSI	RCATGY	2 cut(s)	1534, 1538
BstSCI	CCNGG	5 cut(s)	997, 1007, 1266, 1296, 1543
BstSFI	CTRYAG	3 cut(s)	642, 1118, 1151
BstV1I	GCAGC	3 cut(s)	1283, 1504, 1566
BstV2I	GAAGAC	3 cut(s)	690, 889, 1401
BstX2I	RGATCY	2 cut(s)	931, 1103
BstXI	CCANNNNNNTGG	1 cut(s)	1590
BstYI	RGATCY	2 cut(s)	931, 1103
Bsu15I	ATCGAT	1 cut(s)	508
BsuRI	GGCC	4 cut(s)	211, 516, 1174, 1266
BsuTUI	ATCGAT	1 cut(s)	508
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	4 cut(s)	580, 1033, 1348, 1395
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	3 cut(s)	289, 874, 1160
BveI	ACCTGC	1 cut(s)	1316
Cac8I	GCNNGC	1 cut(s)	792
CfoI	GCGC	2 cut(s)	243, 1089
Cfr10I	RCCGGY	2 cut(s)	311, 1417
Cfr13I	GGNCC	4 cut(s)	209, 730, 1004, 1172
ClaI	ATCGAT	1 cut(s)	508
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	1191, 1365
CspAI	ACCGGT	1 cut(s)	1417
CspCI	CAANNNNNGTGG	2 cut(s)	784, 819
CviAII	CATG	8 cut(s)	229, 571, 688, 1169, 1208, 1487, 1531, 1535
CviQI	GTAC	2 cut(s)	1191, 1365
DdeI	CTNAG	7 cut(s)	5, 137, 172, 263, 726, 1132, 1312
DinI	GGCGCC	1 cut(s)	1088
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	4 cut(s)	137, 163, 495, 1410
EarI	CTCTTC	4 cut(s)	137, 163, 495, 1410
Eco130I	CCWWGG	1 cut(s)	937
Eco147I	AGGCCT	1 cut(s)	1266
Eco47I	GGWCC	2 cut(s)	730, 1004
Eco57I	CTGAAG	2 cut(s)	1272, 1488
EcoO109I	RGGNCCY	1 cut(s)	1004
EcoRII	CCWGG	5 cut(s)	997, 1007, 1266, 1296, 1543
EcoT14I	CCWWGG	1 cut(s)	937
EcoT22I	ATGCAT	1 cut(s)	1536
EgeI	GGCGCC	1 cut(s)	1088
EheI	GGCGCC	1 cut(s)	1088
ErhI	CCWWGG	1 cut(s)	937
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	8 cut(s)	232, 574, 691, 1172, 1211, 1490, 1534, 1538
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	8 cut(s)	228, 570, 687, 1168, 1207, 1486, 1530, 1534
FauI	CCCGC	1 cut(s)	1267
FbaI	TGATCA	2 cut(s)	1258, 1345
Fnu4HI	GCNGC	7 cut(s)	268, 309, 992, 1272, 1287, 1518, 1580
FokI	GGATG	4 cut(s)	587, 1040, 1355, 1402
Fsp4HI	GCNGC	7 cut(s)	268, 309, 992, 1272, 1287, 1518, 1580
FspBI	CTAG	2 cut(s)	443, 1386
GlaI	GCGC	2 cut(s)	242, 1088
GluI	GCNGC	7 cut(s)	268, 309, 992, 1272, 1287, 1518, 1580
HaeII	RGCGCY	2 cut(s)	244, 1090
HaeIII	GGCC	4 cut(s)	211, 516, 1174, 1266
HapII	CCGG	3 cut(s)	312, 1320, 1418
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	2 cut(s)	243, 1089
Hin1I	GRCGYC	2 cut(s)	14, 1087
Hin1II	CATG	8 cut(s)	232, 574, 691, 1172, 1211, 1490, 1534, 1538
Hin6I	GCGC	2 cut(s)	241, 1087
HinP1I	GCGC	2 cut(s)	241, 1087
HincII	GTYRAC	3 cut(s)	977, 1075, 1243
HindII	GTYRAC	3 cut(s)	977, 1075, 1243
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	4 cut(s)	662, 830, 1334, 1457
HpaII	CCGG	3 cut(s)	312, 1320, 1418
HphI	GGTGA	3 cut(s)	40, 703, 1223
Hpy166II	GTNNAC	5 cut(s)	614, 634, 977, 1075, 1243
Hpy188I	TCNGA	8 cut(s)	140, 175, 379, 682, 702, 1135, 1166, 1252
Hpy188III	TCNNGA	7 cut(s)	353, 728, 1056, 1320, 1376, 1478, 1506
Hpy8I	GTNNAC	5 cut(s)	614, 634, 977, 1075, 1243
HpyCH4III	ACNGT	1 cut(s)	1155
HpyCH4IV	ACGT	2 cut(s)	534, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	7 cut(s)	5, 137, 172, 263, 726, 1132, 1312
HpySE526I	ACGT	2 cut(s)	534, 979
Hsp92I	GRCGYC	2 cut(s)	14, 1087
Hsp92II	CATG	8 cut(s)	232, 574, 691, 1172, 1211, 1490, 1534, 1538
HspAI	GCGC	2 cut(s)	241, 1087
KasI	GGCGCC	1 cut(s)	1086
Kpn2I	TCCGGA	1 cut(s)	1319
Ksp22I	TGATCA	2 cut(s)	1258, 1345
LmnI	GCTCC	2 cut(s)	999, 1322
Lsp1109I	GCAGC	3 cut(s)	1283, 1504, 1566
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	2 cut(s)	443, 1386
MaeII	ACGT	2 cut(s)	534, 979
MaeIII	GTNAC	4 cut(s)	10, 314, 869, 1450
MfeI	CAATTG	1 cut(s)	1200
MflI	RGATCY	2 cut(s)	931, 1103
MluCI	AATT	8 cut(s)	342, 557, 840, 1060, 1200, 1280, 1326, 1509
Mly113I	GGCGCC	1 cut(s)	1087
MlyI	GAGTC	1 cut(s)	1466
Mph1103I	ATGCAT	1 cut(s)	1536
MroI	TCCGGA	1 cut(s)	1319
MroXI	GAANNNNTTC	1 cut(s)	829
MseI	TTAA	5 cut(s)	246, 738, 746, 1196, 1422
MslI	CAYNNNNRTG	1 cut(s)	1533
MspA1I	CMGCKG	1 cut(s)	1274
MspCI	CTTAAG	1 cut(s)	737
MspI	CCGG	3 cut(s)	312, 1320, 1418
MspR9I	CCNGG	5 cut(s)	999, 1009, 1268, 1298, 1545
MunI	CAATTG	1 cut(s)	1200
Mva1269I	GAATGC	1 cut(s)	386
MvaI	CCWGG	5 cut(s)	999, 1009, 1268, 1298, 1545
MwoI	GCNNNNNNNGC	1 cut(s)	238
NarI	GGCGCC	1 cut(s)	1087
NlaIII	CATG	8 cut(s)	232, 574, 691, 1172, 1211, 1490, 1534, 1538
NlaIV	GGNNCC	5 cut(s)	995, 1006, 1088, 1105, 1318
NmuCI	GTSAC	3 cut(s)	10, 314, 869
NsiI	ATGCAT	1 cut(s)	1536
NspI	RCATGY	2 cut(s)	1534, 1538
PceI	AGGCCT	1 cut(s)	1266
PcsI	WCGNNNNNNNCGW	1 cut(s)	514
PctI	GAATGC	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	829
PfeI	GAWTC	3 cut(s)	662, 830, 1334
PfoI	TCCNGGA	1 cut(s)	1543
PinAI	ACCGGT	1 cut(s)	1417
PkrI	GCNGC	7 cut(s)	269, 310, 993, 1273, 1288, 1519, 1581
PleI	GAGTC	1 cut(s)	1465
PluTI	GGCGCC	1 cut(s)	1090
PpsI	GAGTC	1 cut(s)	1465
PpuMI	RGGWCCY	1 cut(s)	1004
PshBI	ATTAAT	1 cut(s)	746
Psp5II	RGGWCCY	1 cut(s)	1004
Psp6I	CCWGG	5 cut(s)	997, 1007, 1266, 1296, 1543
PspGI	CCWGG	5 cut(s)	997, 1007, 1266, 1296, 1543
PspN4I	GGNNCC	5 cut(s)	995, 1006, 1088, 1105, 1318
PspPI	GGNCC	4 cut(s)	209, 730, 1004, 1172
PspPPI	RGGWCCY	1 cut(s)	1004
PstI	CTGCAG	1 cut(s)	646
PsuI	RGATCY	2 cut(s)	931, 1103
RsaI	GTAC	2 cut(s)	1192, 1366
RsaNI	GTAC	2 cut(s)	1191, 1365
RseI	CAYNNNNRTG	1 cut(s)	1533
SaqAI	TTAA	5 cut(s)	246, 738, 746, 1196, 1422
SatI	GCNGC	7 cut(s)	268, 309, 992, 1272, 1287, 1518, 1580
Sau96I	GGNCC	4 cut(s)	209, 730, 1004, 1172
SchI	GAGTC	1 cut(s)	1466
ScrFI	CCNGG	5 cut(s)	999, 1009, 1268, 1298, 1545
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	3 cut(s)	642, 1118, 1151
SfoI	GGCGCC	1 cut(s)	1088
SinI	GGWCC	2 cut(s)	730, 1004
SmiMI	CAYNNNNRTG	1 cut(s)	1533
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
Sse9I	AATT	8 cut(s)	342, 557, 840, 1060, 1200, 1280, 1326, 1509
SseBI	AGGCCT	1 cut(s)	1266
SsiI	CCGC	7 cut(s)	267, 270, 309, 327, 991, 1274, 1286
SspDI	GGCGCC	1 cut(s)	1086
SspI	AATATT	4 cut(s)	470, 750, 912, 1611
SspMI	CTAG	2 cut(s)	443, 1386
StuI	AGGCCT	1 cut(s)	1266
StyD4I	CCNGG	5 cut(s)	997, 1007, 1266, 1296, 1543
StyI	CCWWGG	1 cut(s)	937
TaaI	ACNGT	1 cut(s)	1155
TaiI	ACGT	2 cut(s)	537, 982
TaqI	TCGA	4 cut(s)	276, 508, 770, 1496
TaqII	GACCGA	1 cut(s)	962
TasI	AATT	8 cut(s)	342, 557, 840, 1060, 1200, 1280, 1326, 1509
TatI	WGTACW	1 cut(s)	1364
TauI	GCSGC	4 cut(s)	270, 311, 994, 1289
TfiI	GAWTC	3 cut(s)	662, 830, 1334
Tru1I	TTAA	5 cut(s)	246, 738, 746, 1196, 1422
Tru9I	TTAA	5 cut(s)	246, 738, 746, 1196, 1422
TscAI	CASTG	3 cut(s)	289, 874, 1160
TseFI	GTSAC	3 cut(s)	10, 314, 869
TseI	GCWGC	3 cut(s)	1271, 1517, 1579
Tsp45I	GTSAC	3 cut(s)	10, 314, 869
TspDTI	ATGAA	4 cut(s)	480, 559, 1239, 1475
TspGWI	ACGGA	2 cut(s)	1085, 1469
TspRI	CASTG	3 cut(s)	289, 874, 1160
Vha464I	CTTAAG	1 cut(s)	737
VpaK11BI	GGWCC	2 cut(s)	730, 1004
VspI	ATTAAT	1 cut(s)	746
XapI	RAATTY	4 cut(s)	342, 557, 840, 1509
XceI	RCATGY	2 cut(s)	1534, 1538
XcmI	CCANNNNNNNNNTGG	2 cut(s)	586, 1005
XmnI	GAANNNNTTC	1 cut(s)	829
XspI	CTAG	2 cut(s)	443, 1386
Zsp2I	ATGCAT	1 cut(s)	1536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.