FvH4_5g35690

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012874
Physical Location & Seq
Forward (+)
26137646 .. 26140295
2650 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35690.t1

Sequence Viewer

Length: 423 bp
ATGACGTGGGACGAGTGGGGCGACAACAGCTTCTCCGACACCGACGAACAATCACAACAACAACAGACCGACCAAGATTCGCACTTGAAGTTCGATTTCTTCTCGGAGCTCTCGAAACCCAAGGATTACTATAAGATTCTTGAAGTGGATTATGATGCCACCGACGATACCATTCGCTCCAATTACATTCGTCTCGCCCTGAAATGGCACCCAGATAAGCAAAAAGACAAGAACTGTTCCACCTCCAGGTTTCAAGAAATAAACGAGGCATATCAAGTTTTGAGTGACCCAGCTAAGAGAAGAGAATATGACAAGCAAGGGATGCTTTATGTCTATGATTATAACATAACTGAGTATCTGAACCGCTACAAAGGTCTTATATTGACATGCAATGGCCTTGGGATAAGGCATTCCATTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

141

Amino Acids

16.82

Weight (kDa)

4.9

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 42 - 104 5.3e-25 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33735 AT2G33735
fragaria_vesca FvH4_5g35690
malus_domestica MD08G1194000.v1.1 MD15G1382100.v1.1
prunus_persica Prupe.1G528300_v2.0.a1
pyrus_communis pycom08g16690 pycom15g34210
rosa_chinensis RchiOBHm_Chr7g0237331
rosa_laevigata RLG00000001011
rosa_multiflora Rmu_sc0002923.1_g000039
rosa_roxburghii Rroxscaffold_3G00224310
rosa_rugosa Rorug07G0302800
rosa_samantha Rh7AG459900 Rh7BG429800 Rh7CG477200 Rh7DG446500
rosa_wichuraiana Rw7G038090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AccB1I GGYRCC 1 cut(s) 207
AciI CCGC 1 cut(s) 364
AfiI CCNNNNNNNGG 2 cut(s) 204, 246
AgsI TTSAA 3 cut(s) 88, 143, 254
AjiI CACGTC 1 cut(s) 6
AjnI CCWGG 1 cut(s) 245
AluBI AGCT 3 cut(s) 30, 109, 293
AluI AGCT 3 cut(s) 30, 109, 293
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 197
AoxI GGCC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 207
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 247
BmgBI CACGTC 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 247
BmsI GCATC 2 cut(s) 145, 312
BpmI CTGGAG 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 120, 397
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 246
Bse3DI GCAATG 1 cut(s) 397
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 120, 397
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 204, 246
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 1 cut(s) 342
BseYI CCCAGC 1 cut(s) 289
BshFI GGCC 1 cut(s) 396
BshNI GGYRCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 111
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 204, 246
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 1 cut(s) 396
Bsp1286I GDGCHC 1 cut(s) 111
BspACI CCGC 1 cut(s) 364
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 397
BssECI CCNNGG 2 cut(s) 120, 397
BssT1I CCWWGG 2 cut(s) 120, 397
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 295
BstAPI GCANNNNNTGC 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 294, 351
BstF5I GGATG 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 197
BstMWI GCNNNNNNNGC 2 cut(s) 27, 322
BstNI CCWGG 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 245
BsuRI GGCC 1 cut(s) 396
BtrI CACGTC 1 cut(s) 6
BtsCI GGATG 1 cut(s) 327
CviAII CATG 1 cut(s) 387
CviJI RGCY 4 cut(s) 30, 109, 293, 396
CviKI_1 RGCY 4 cut(s) 30, 109, 293, 396
DdeI CTNAG 2 cut(s) 294, 351
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 120, 397
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 245
EcoT14I CCWWGG 2 cut(s) 120, 397
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 2 cut(s) 120, 397
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 1 cut(s) 390
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 386
FokI GGATG 1 cut(s) 334
FriOI GRGCYC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 1 cut(s) 396
Hin1II CATG 1 cut(s) 390
HinfI GANTC 2 cut(s) 77, 136
Hpy188I TCNGA 3 cut(s) 37, 106, 360
Hpy188III TCNNGA 3 cut(s) 112, 140, 254
Hpy99I CGWCG 2 cut(s) 47, 167
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 1 cut(s) 390
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 322
HpyF3I CTNAG 2 cut(s) 294, 351
HpySE526I ACGT 1 cut(s) 5
Hsp92II CATG 1 cut(s) 390
LmnI GCTCC 2 cut(s) 106, 182
LpnPI CCDG 5 cut(s) 212, 225, 232, 259, 303
LweI GCATC 2 cut(s) 145, 312
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 284
MboII GAAGA 2 cut(s) 91, 312
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 2 cut(s) 253, 259
MspR9I CCNGG 1 cut(s) 247
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 2 cut(s) 27, 322
NlaIII CATG 1 cut(s) 390
NlaIV GGNNCC 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 284
NspI RCATGY 1 cut(s) 390
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 110
PctI GAATGC 1 cut(s) 409
PfeI GAWTC 2 cut(s) 77, 136
PsiI TTATAA 1 cut(s) 342
Psp124BI GAGCTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 245
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 209
SacI GAGCTC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 247
SduI GDGCHC 1 cut(s) 111
SetI ASST 7 cut(s) 8, 32, 111, 245, 251, 295, 376
SfaNI GCATC 2 cut(s) 145, 312
Sse9I AATT 1 cut(s) 181
SsiI CCGC 1 cut(s) 364
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 245
StyI CCWWGG 2 cut(s) 120, 397
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 93, 113
TaqII GACCGA 1 cut(s) 83
TasI AATT 1 cut(s) 181
TfiI GAWTC 2 cut(s) 77, 136
TseFI GTSAC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 284
XceI RCATGY 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.