Rroxscaffold_3G00224310

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012874
Physical Location & Seq
Reverse (-)
7399979 .. 7403607
3629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224310.1

Sequence Viewer

Length: 585 bp
ATGATGTGGGACGAGTGGGGCGACCCAAGTTTCTCCAACACCGATGAACAACAACAACACACCGACCAAGATTCGCACTTGAACTTCGATTTCTTCTCGGAGCTCTCGAAACCCAAGGATTACTATAAGATTCTTGAAGTGGATTATGATGCCACCGACGATTCCATTCGCTCCAATTACATCCGTCTCGCCCTGAAATGGCACCCAGATAAGCAAAAAGACCAGAACTGTTCCACCTCCAGGTTTCAAGAAATAAATGAGGCGTATCAAGTAGAAACATGGATCTTTGTTGGTTTCCTAAAAGATAATATGTTGGGAGGAATGGAGGATACAGGCTGCATTCTGTATCTTGAATGTGAACATATGTATATTAGAGCTGGTTCATCAAACGTTCAAACTAATGTGAAGTTTGAGTGCTTAGAAAAGCCAGGAGGTGGCTTTTTGAGTGACCCAGCTAAGAGAAGAGAATATGACAAGCAAGGGATGCTTTACGTCTATGATTATAACATAACTGAGTATCTTAACCGCTACAAAGGTCTTATATTGACATGCAATGGCCTTGGGATAAGGCATTCAATTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

194

Amino Acids

22.86

Weight (kDa)

4.78

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 40 - 91 8.8e-18 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33735 AT2G33735
fragaria_vesca FvH4_5g35690
malus_domestica MD08G1194000.v1.1 MD15G1382100.v1.1
prunus_persica Prupe.1G528300_v2.0.a1
pyrus_communis pycom08g16690 pycom15g34210
rosa_chinensis RchiOBHm_Chr7g0237331
rosa_laevigata RLG00000001011
rosa_multiflora Rmu_sc0002923.1_g000039
rosa_roxburghii Rroxscaffold_3G00224310
rosa_rugosa Rorug07G0302800
rosa_samantha Rh7AG459900 Rh7BG429800 Rh7CG477200 Rh7DG446500
rosa_wichuraiana Rw7G038090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 201
AccB7I CCANNNNNTGG 1 cut(s) 434
AciI CCGC 1 cut(s) 526
AclI AACGTT 1 cut(s) 390
AclWI GGATC 1 cut(s) 290
AfiI CCNNNNNNNGG 3 cut(s) 198, 240, 434
AgsI TTSAA 6 cut(s) 82, 137, 248, 353, 395, 576
AjnI CCWGG 2 cut(s) 239, 427
AluBI AGCT 3 cut(s) 103, 377, 455
AluI AGCT 3 cut(s) 103, 377, 455
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 1 cut(s) 290
AoxI GGCC 1 cut(s) 556
ApeKI GCWGC 1 cut(s) 336
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 323
BciT130I CCWGG 2 cut(s) 241, 429
BciVI GTATCC 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 191
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 1 cut(s) 337
BlsI GCNGC 1 cut(s) 338
Bme1390I CCNGG 2 cut(s) 241, 429
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 2 cut(s) 241, 429
BmsI GCATC 2 cut(s) 139, 474
BpmI CTGGAG 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 114, 559
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 240, 434
Bse3DI GCAATG 1 cut(s) 559
BseBI CCWGG 2 cut(s) 241, 429
BseDI CCNNGG 2 cut(s) 114, 559
BseGI GGATG 2 cut(s) 180, 489
BseLI CCNNNNNNNGG 3 cut(s) 198, 240, 434
BseMI GCAATG 1 cut(s) 559
BseMII CTCAG 1 cut(s) 504
BseXI GCAGC 1 cut(s) 323
BseYI CCCAGC 1 cut(s) 451
BshFI GGCC 1 cut(s) 558
BshNI GGYRCC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 3 cut(s) 198, 240, 434
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 2 cut(s) 339, 571
BsnI GGCC 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 1 cut(s) 526
BspANI GGCC 1 cut(s) 558
BspCNI CTCAG 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 203
BspPI GGATC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 559
BssECI CCNNGG 2 cut(s) 114, 559
BssMI GATC 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 114, 559
Bst2UI CCWGG 2 cut(s) 241, 429
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 457
BstAPI GCANNNNNTGC 1 cut(s) 484
BstDEI CTNAG 3 cut(s) 418, 456, 513
BstF5I GGATG 2 cut(s) 180, 489
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 484
BstNI CCWGG 2 cut(s) 241, 429
BstNSI RCATGY 1 cut(s) 552
BstSCI CCNGG 2 cut(s) 239, 427
BstV1I GCAGC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 1 cut(s) 558
BtsCI GGATG 2 cut(s) 180, 489
CviAII CATG 2 cut(s) 279, 549
CviJI RGCY 7 cut(s) 103, 336, 377, 427, 438, 455, 558
CviKI_1 RGCY 7 cut(s) 103, 336, 377, 427, 438, 455, 558
DdeI CTNAG 3 cut(s) 418, 456, 513
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 114, 559
Eco24I GRGCYC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 239, 427
EcoT14I CCWWGG 2 cut(s) 114, 559
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 114, 559
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 2 cut(s) 282, 552
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FaqI GGGAC 1 cut(s) 23
FatI CATG 2 cut(s) 278, 548
FauNDI CATATG 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 337
FokI GGATG 2 cut(s) 167, 496
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 337
GluI GCNGC 1 cut(s) 337
GsaI CCCAGC 1 cut(s) 455
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 1 cut(s) 558
Hin1II CATG 2 cut(s) 282, 552
HinfI GANTC 3 cut(s) 71, 130, 161
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 4 cut(s) 106, 134, 248, 350
Hpy8I GTNNAC 1 cut(s) 359
Hpy99I CGWCG 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 2 cut(s) 390, 492
HpyCH4V TGCA 2 cut(s) 339, 552
HpyF10VI GCNNNNNNNGC 1 cut(s) 484
HpyF3I CTNAG 3 cut(s) 418, 456, 513
HpySE526I ACGT 2 cut(s) 390, 492
Hsp92II CATG 2 cut(s) 282, 552
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 2 cut(s) 100, 176
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 2 cut(s) 139, 474
MaeII ACGT 2 cut(s) 390, 492
MaeIII GTNAC 1 cut(s) 446
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 2 cut(s) 85, 474
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 175, 576
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 5 cut(s) 247, 253, 311, 319, 425
MseI TTAA 1 cut(s) 522
MspR9I CCNGG 2 cut(s) 241, 429
Mva1269I GAATGC 2 cut(s) 339, 571
MvaI CCWGG 2 cut(s) 241, 429
MwoI GCNNNNNNNGC 1 cut(s) 484
NdeI CATATG 1 cut(s) 363
NdeII GATC 1 cut(s) 282
NlaIII CATG 2 cut(s) 282, 552
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 446
NspI RCATGY 1 cut(s) 552
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 104
PctI GAATGC 2 cut(s) 339, 571
PfeI GAWTC 3 cut(s) 71, 130, 161
PflMI CCANNNNNTGG 1 cut(s) 434
PkrI GCNGC 1 cut(s) 338
PsiI TTATAA 1 cut(s) 504
Psp124BI GAGCTC 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 239, 427
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 2 cut(s) 239, 427
PspN4I GGNNCC 1 cut(s) 203
PsuI RGATCY 1 cut(s) 282
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 1 cut(s) 337
Sau3AI GATC 1 cut(s) 282
ScrFI CCNGG 2 cut(s) 241, 429
SduI GDGCHC 1 cut(s) 105
SetI ASST 9 cut(s) 105, 239, 245, 379, 393, 436, 457, 495, 538
SfaNI GCATC 2 cut(s) 139, 474
Sse9I AATT 2 cut(s) 175, 576
SsiI CCGC 1 cut(s) 526
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 239, 427
StyI CCWWGG 2 cut(s) 114, 559
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 2 cut(s) 393, 495
TaqI TCGA 2 cut(s) 87, 107
TasI AATT 2 cut(s) 175, 576
TfiI GAWTC 3 cut(s) 71, 130, 161
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 1 cut(s) 336
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 60, 372
TspGWI ACGGA 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 434
XceI RCATGY 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.