MD15G1382100.v1.1

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012874
Physical Location & Seq
Reverse (-)
47105116 .. 47108044
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1382100.v1.1.491

Sequence Viewer

Length: 420 bp
ATGATGTGGGACGAGTGGGACGACACCATTTTCTCCGACGCCGACCAACAACAACAACAACAATCCGACCAGGATTCTCACCTCAATTTCGATTTCTTCTCCGACCTCTCCAAACCCAAGGACTACTACAAGATATTGGAAGTGGATTATGATGCCAATGATGACGCCATTCGCTCTAACTACATCCGCCTCGCATTGAAATGGCATCCGGATAAGCACAAGGACCAGGACAGTGCCACCTCCAGGTTCCAAGAGATAAACGAAGCTTACCAAGTTTTGAGTGATCCAGCGAAGAGAATAGAATATGACAAAAAAGGGATGCTTTACGTCTACGACTATAATATAAGTGAGTACCTAAACCGCTACAAAGGTCTTATATTGACGTGCAATGGCCTCGGGATAAGGACTTCAATTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

140

Amino Acids

16.63

Weight (kDa)

4.59

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 41 - 103 1.8e-24 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33735 AT2G33735
fragaria_vesca FvH4_5g35690
malus_domestica MD08G1194000.v1.1 MD15G1382100.v1.1
prunus_persica Prupe.1G528300_v2.0.a1
pyrus_communis pycom08g16690 pycom15g34210
rosa_chinensis RchiOBHm_Chr7g0237331
rosa_laevigata RLG00000001011
rosa_multiflora Rmu_sc0002923.1_g000039
rosa_roxburghii Rroxscaffold_3G00224310
rosa_rugosa Rorug07G0302800
rosa_samantha Rh7AG459900 Rh7BG429800 Rh7CG477200 Rh7DG446500
rosa_wichuraiana Rw7G038090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 330
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 2 cut(s) 187, 361
AclWI GGATC 1 cut(s) 278
AcyI GRCGYC 2 cut(s) 39, 165
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 2 cut(s) 199, 411
AjiI CACGTC 1 cut(s) 384
AjnI CCWGG 3 cut(s) 69, 225, 242
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AlwI GGATC 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 395
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 1 cut(s) 391
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BciT130I CCWGG 3 cut(s) 71, 227, 244
Bme1390I CCNGG 3 cut(s) 71, 227, 244
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 395
BmgBI CACGTC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 3 cut(s) 71, 227, 244
BmsI GCATC 3 cut(s) 142, 214, 309
BpmI CTGGAG 1 cut(s) 226
BsaHI GRCGYC 2 cut(s) 39, 165
BsaJI CCNNGG 2 cut(s) 117, 394
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 394
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 3 cut(s) 71, 227, 244
BseDI CCNNGG 2 cut(s) 117, 394
BseGI GGATG 3 cut(s) 183, 205, 324
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMI GCAATG 1 cut(s) 394
BshFI GGCC 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 2 cut(s) 23, 32
BslI CCNNNNNNNGG 1 cut(s) 243
BsmFI GGGAC 2 cut(s) 23, 32
BsnI GGCC 1 cut(s) 393
BsoBI CYCGRG 1 cut(s) 395
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 2 cut(s) 187, 361
BspANI GGCC 1 cut(s) 393
BspEI TCCGGA 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 248
BspPI GGATC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 394
BssECI CCNNGG 2 cut(s) 117, 394
BssMI GATC 1 cut(s) 283
BssNI GRCGYC 2 cut(s) 39, 165
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 3 cut(s) 71, 227, 244
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 287
BstACI GRCGYC 2 cut(s) 39, 165
BstF5I GGATG 3 cut(s) 183, 205, 324
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstNI CCWGG 3 cut(s) 71, 227, 244
BstSCI CCNGG 3 cut(s) 69, 225, 242
BsuRI GGCC 1 cut(s) 393
BtrI CACGTC 1 cut(s) 384
BtsCI GGATG 3 cut(s) 183, 205, 324
BtsIMutI CAGTG 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 223
CseI GACGC 2 cut(s) 47, 173
Csp6I GTAC 1 cut(s) 352
CviJI RGCY 2 cut(s) 266, 393
CviKI_1 RGCY 2 cut(s) 266, 393
CviQI GTAC 1 cut(s) 352
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
EciI GGCGGA 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 395
EcoRII CCWGG 3 cut(s) 69, 225, 242
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaiI YATR 5 cut(s) 150, 306, 339, 344, 377
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 2 cut(s) 23, 32
FblI GTMKAC 1 cut(s) 330
FokI GGATG 3 cut(s) 170, 192, 331
GsuI CTGGAG 1 cut(s) 226
HaeIII GGCC 1 cut(s) 393
HapII CCGG 1 cut(s) 209
HgaI GACGC 2 cut(s) 47, 173
Hin1I GRCGYC 2 cut(s) 39, 165
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 1 cut(s) 74
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 3 cut(s) 37, 67, 103
Hpy188III TCNNGA 2 cut(s) 209, 397
Hpy8I GTNNAC 1 cut(s) 331
Hpy99I CGWCG 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 2 cut(s) 327, 383
HpyCH4V TGCA 1 cut(s) 387
HpySE526I ACGT 2 cut(s) 327, 383
Hsp92I GRCGYC 2 cut(s) 39, 165
Kpn2I TCCGGA 1 cut(s) 208
Kzo9I GATC 1 cut(s) 283
LpnPI CCDG 8 cut(s) 56, 83, 212, 222, 229, 239, 256, 300
LweI GCATC 3 cut(s) 142, 214, 309
MaeII ACGT 2 cut(s) 327, 383
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 2 cut(s) 88, 304
MluCI AATT 2 cut(s) 85, 411
MmeI TCCRAC 3 cut(s) 60, 90, 126
MnlI CCTC 5 cut(s) 92, 116, 200, 250, 404
MroI TCCGGA 1 cut(s) 208
MslI CAYNNNNRTG 1 cut(s) 199
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 3 cut(s) 71, 227, 244
MvaI CCWGG 3 cut(s) 71, 227, 244
NdeII GATC 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PfeI GAWTC 1 cut(s) 74
Psp6I CCWGG 3 cut(s) 69, 225, 242
PspGI CCWGG 3 cut(s) 69, 225, 242
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 223
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 199
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 3 cut(s) 71, 227, 244
SetI ASST 9 cut(s) 84, 108, 242, 248, 268, 330, 357, 373, 386
SfaNI GCATC 3 cut(s) 142, 214, 309
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 199
Sse9I AATT 2 cut(s) 85, 411
SsiI CCGC 2 cut(s) 187, 361
StyD4I CCNGG 3 cut(s) 69, 225, 242
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 2 cut(s) 330, 386
TaqI TCGA 1 cut(s) 90
TasI AATT 2 cut(s) 85, 411
TfiI GAWTC 1 cut(s) 74
TscAI CASTG 1 cut(s) 238
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.