Rmu_sc0002923.1_g000039

Chaperone protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002923.1
Physical Location & Seq
Reverse (-)
169286 .. 172675
3390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002923.1_g000039.1.cds

Sequence Viewer

Length: 546 bp
atgatgtgggacgagtggggcgacccaagtttctccaacaccgatgaacaacaacaacaacacaccgaccaagattcgcacttgaacttcgatttcttctcggagctctccaaacccaaggattactataagattcttgaagtggattatgatgccaccgacgattccattcgctccaattacatccgtctcgccctgaaatggcacccagataagcaaaaagaccagaactgttccacctccaggtttcaagaaataaatgaggcgtatcaagttttgagtgacccagctaagagaagagaatatgacaagcaagggatgctttacgtctatgattataacataactgagtatcttaatcgctacaaaggtcttatattgacatgcaatggccttgggataaggcattcaatttgtagaaggactggtgctttagatgtattctggggttactatcatcatatcctcctgtataaaatagagaacagggatatcaccgtcacttttcgatggctcacgcctccccccatgttacctctcttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

181

Amino Acids

21.74

Weight (kDa)

5.47

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33735 AT2G33735
fragaria_vesca FvH4_5g35690
malus_domestica MD08G1194000.v1.1 MD15G1382100.v1.1
prunus_persica Prupe.1G528300_v2.0.a1
pyrus_communis pycom08g16690 pycom15g34210
rosa_chinensis RchiOBHm_Chr7g0237331
rosa_laevigata RLG00000001011
rosa_multiflora Rmu_sc0002923.1_g000039
rosa_roxburghii Rroxscaffold_3G00224310
rosa_rugosa Rorug07G0302800
rosa_samantha Rh7AG459900 Rh7BG429800 Rh7CG477200 Rh7DG446500
rosa_wichuraiana Rw7G038090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
AccB1I GGYRCC 1 cut(s) 204
AfiI CCNNNNNNNGG 2 cut(s) 201, 243
AgsI TTSAA 4 cut(s) 85, 140, 251, 411
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 2 cut(s) 106, 290
AluI AGCT 2 cut(s) 106, 290
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 194
AoxI GGCC 1 cut(s) 391
AsuHPI GGTGA 1 cut(s) 487
BanI GGYRCC 1 cut(s) 204
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 108
BccI CCATC 1 cut(s) 504
BciT130I CCWGG 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 2 cut(s) 142, 309
BpmI CTGGAG 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 117, 394
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 243
Bse1I ACTGG 1 cut(s) 430
Bse3DI GCAATG 1 cut(s) 394
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 117, 394
BseGI GGATG 2 cut(s) 183, 324
BseLI CCNNNNNNNGG 2 cut(s) 201, 243
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 430
BseYI CCCAGC 1 cut(s) 286
BshFI GGCC 1 cut(s) 393
BshNI GGYRCC 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 201, 243
BsmAI GTCTC 1 cut(s) 194
BsmBI CGTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 108
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 1 cut(s) 430
BssECI CCNNGG 2 cut(s) 117, 394
BssT1I CCWWGG 2 cut(s) 117, 394
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 233, 499
Bst6I CTCTTC 1 cut(s) 292
BstAPI GCANNNNNTGC 1 cut(s) 319
BstDEI CTNAG 2 cut(s) 291, 348
BstF5I GGATG 2 cut(s) 183, 324
BstMAI GTCTC 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstNI CCWGG 1 cut(s) 244
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 242
BsuRI GGCC 1 cut(s) 393
BtsCI GGATG 2 cut(s) 183, 324
CviAII CATG 2 cut(s) 384, 529
CviJI RGCY 4 cut(s) 106, 290, 393, 514
CviKI_1 RGCY 4 cut(s) 106, 290, 393, 514
DdeI CTNAG 2 cut(s) 291, 348
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 117, 394
Eco24I GRGCYC 1 cut(s) 108
Eco32I GATATC 1 cut(s) 493
Eco53kI GAGCTC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 242
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 2 cut(s) 117, 394
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 2 cut(s) 117, 394
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 2 cut(s) 387, 532
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 1 cut(s) 23
FatI CATG 2 cut(s) 383, 528
FokI GGATG 2 cut(s) 170, 331
FriOI GRGCYC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 226
HaeIII GGCC 1 cut(s) 393
Hin1II CATG 2 cut(s) 387, 532
HinfI GANTC 3 cut(s) 74, 133, 164
HphI GGTGA 1 cut(s) 487
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 137, 251
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 2 cut(s) 233, 499
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 1 cut(s) 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
HpyF3I CTNAG 2 cut(s) 291, 348
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 2 cut(s) 387, 532
LmnI GCTCC 2 cut(s) 103, 179
LweI GCATC 2 cut(s) 142, 309
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 4 cut(s) 281, 449, 499, 531
MboII GAAGA 2 cut(s) 88, 309
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 2 cut(s) 178, 411
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 5 cut(s) 250, 256, 476, 531, 546
MseI TTAA 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 244
Mva1269I GAATGC 1 cut(s) 406
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 319
NlaIII CATG 2 cut(s) 387, 532
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 2 cut(s) 281, 499
NspI RCATGY 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 3 cut(s) 74, 133, 164
PsiI TTATAA 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 286
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 206
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 357
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 1 cut(s) 108
SetI ASST 7 cut(s) 108, 242, 248, 292, 330, 373, 538
SfaNI GCATC 2 cut(s) 142, 309
Sse9I AATT 2 cut(s) 178, 411
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 242
StyI CCWWGG 2 cut(s) 117, 394
TaaI ACNGT 2 cut(s) 233, 499
TaiI ACGT 1 cut(s) 330
TaqI TCGA 2 cut(s) 90, 508
TasI AATT 2 cut(s) 178, 411
TfiI GAWTC 3 cut(s) 74, 133, 164
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TseFI GTSAC 2 cut(s) 281, 499
Tsp45I GTSAC 2 cut(s) 281, 499
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 176
XceI RCATGY 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.