Rw7G038090

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0012874
Physical Location & Seq
Forward (+)
57808515 .. 57833820
25306 bp
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UTR
Exon/CDS
Intron
Rw7G038090.1

Sequence Viewer

Length: 417 bp
ATGATGTGGGACGAGTGGGGCGACCCAAGTTTCTCCAACACCGATGAACAACAACAACACACCGACCAAGATTCGCACTTGAACTTCGATTTCTTCTCGGAGCTCTCCAAACCCAAGGATTACTATAAGATTCTTGAAGTGGATTATGATGCCACCGACGATTCCATTCGCTCCAATTACATCCGTCTCGCCCTGAAATGGCACCCAGATAAGCAAAAAGACCAGAACTGTTCCACCTCCAGGTTTCAAGAAATAAATGAGGCGTATCAAGTTTTGAGTGACCCAGCTAAGAGAAGAGAATATGACAAGCAAGGGATGCTTTACGTCTATGATTATAACATAACTGAGTATCTTAATCGCTACAAAGGTCTTATATTGACATGCAATGGCCTTGGGATAAGGCATTCAATTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

138

Amino Acids

16.6

Weight (kDa)

4.88

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 40 - 102 5.2e-25 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33735 AT2G33735
fragaria_vesca FvH4_5g35690
malus_domestica MD08G1194000.v1.1 MD15G1382100.v1.1
prunus_persica Prupe.1G528300_v2.0.a1
pyrus_communis pycom08g16690 pycom15g34210
rosa_chinensis RchiOBHm_Chr7g0237331
rosa_laevigata RLG00000001011
rosa_multiflora Rmu_sc0002923.1_g000039
rosa_roxburghii Rroxscaffold_3G00224310
rosa_rugosa Rorug07G0302800
rosa_samantha Rh7AG459900 Rh7BG429800 Rh7CG477200 Rh7DG446500
rosa_wichuraiana Rw7G038090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 198, 240
AgsI TTSAA 4 cut(s) 82, 137, 248, 408
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 2 cut(s) 103, 287
AluI AGCT 2 cut(s) 103, 287
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 191
AoxI GGCC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 241
BmsI GCATC 2 cut(s) 139, 306
BpmI CTGGAG 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 114, 391
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 240
Bse3DI GCAATG 1 cut(s) 391
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 114, 391
BseGI GGATG 2 cut(s) 180, 321
BseLI CCNNNNNNNGG 2 cut(s) 198, 240
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 336
BseYI CCCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 390
BshNI GGYRCC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 198, 240
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 105
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 391
BssECI CCNNGG 2 cut(s) 114, 391
BssT1I CCWWGG 2 cut(s) 114, 391
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 289
BstAPI GCANNNNNTGC 1 cut(s) 316
BstDEI CTNAG 2 cut(s) 288, 345
BstF5I GGATG 2 cut(s) 180, 321
BstMAI GTCTC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNI CCWGG 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 239
BsuRI GGCC 1 cut(s) 390
BtsCI GGATG 2 cut(s) 180, 321
CviAII CATG 1 cut(s) 381
CviJI RGCY 3 cut(s) 103, 287, 390
CviKI_1 RGCY 3 cut(s) 103, 287, 390
DdeI CTNAG 2 cut(s) 288, 345
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 114, 391
Eco24I GRGCYC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 2 cut(s) 114, 391
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 114, 391
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 1 cut(s) 384
FaiI YATR 8 cut(s) 126, 147, 303, 330, 336, 341, 374, 382
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 380
FokI GGATG 2 cut(s) 167, 328
FriOI GRGCYC 1 cut(s) 105
GsaI CCCAGC 1 cut(s) 287
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 1 cut(s) 390
Hin1II CATG 1 cut(s) 384
HinfI GANTC 3 cut(s) 71, 130, 161
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 134, 248
Hpy99I CGWCG 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 1 cut(s) 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 2 cut(s) 288, 345
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 1 cut(s) 384
LmnI GCTCC 2 cut(s) 100, 176
LpnPI CCDG 6 cut(s) 206, 219, 226, 236, 253, 297
LweI GCATC 2 cut(s) 139, 306
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 278
MboII GAAGA 2 cut(s) 85, 306
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 175, 408
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 2 cut(s) 247, 253
MseI TTAA 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 241
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 316
NlaIII CATG 1 cut(s) 384
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 278
NspI RCATGY 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 3 cut(s) 71, 130, 161
PsiI TTATAA 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 239
PspFI CCCAGC 1 cut(s) 283
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 203
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 105
SetI ASST 6 cut(s) 105, 239, 245, 289, 327, 370
SfaNI GCATC 2 cut(s) 139, 306
Sse9I AATT 2 cut(s) 175, 408
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 239
StyI CCWWGG 2 cut(s) 114, 391
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 1 cut(s) 327
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 175, 408
TfiI GAWTC 3 cut(s) 71, 130, 161
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 173
XceI RCATGY 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.