Rh7BG429800

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012874
Physical Location & Seq
Forward (+)
49212809 .. 49216769
3961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG429800.1

Sequence Viewer

Length: 357 bp
ATGATGTGGGACGAGTGGGGCGACCCAAGTTTCTCCAACACCGATGAACAACAACAACACACCGACCAAGATTCGCACTTGAACTTCGATTTCTTCTCGGAGCTCTCCAAACCCAAGGATTACTATAAGATTCTTGAAGTGGATTATGATGCCACCGACGATTCCATTCGCTCCAATTACATCCGTCTCGCCCTGAAATGGCACCCAGATAAGCAAAAAGACCAGAACTGTTCCACCTCCAGGTTTCAAGAAATAAATGAGGCCTATCAAGGTCACCCACATTCTTATGCTTTTACATTTCTAGCTTATGCAATTGAGTTTATGTGTGTTTGGAATTTTAGACTTTCAGCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

118

Amino Acids

14.15

Weight (kDa)

4.67

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 40 - 90 9.6e-18 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33735 AT2G33735
fragaria_vesca FvH4_5g35690
malus_domestica MD08G1194000.v1.1 MD15G1382100.v1.1
prunus_persica Prupe.1G528300_v2.0.a1
pyrus_communis pycom08g16690 pycom15g34210
rosa_chinensis RchiOBHm_Chr7g0237331
rosa_laevigata RLG00000001011
rosa_multiflora Rmu_sc0002923.1_g000039
rosa_roxburghii Rroxscaffold_3G00224310
rosa_rugosa Rorug07G0302800
rosa_samantha Rh7AG459900 Rh7BG429800 Rh7CG477200 Rh7DG446500
rosa_wichuraiana Rw7G038090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 201
AcsI RAATTY 1 cut(s) 334
AfiI CCNNNNNNNGG 2 cut(s) 198, 240
AgsI TTSAA 3 cut(s) 82, 137, 248
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 2 cut(s) 103, 305
AluI AGCT 2 cut(s) 103, 305
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 191
AoxI GGCC 1 cut(s) 261
ApoI RAATTY 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 266
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 241
BmsI GCATC 1 cut(s) 139
BpmI CTGGAG 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 240
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 198, 240
BshFI GGCC 1 cut(s) 263
BshNI GGYRCC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 2 cut(s) 198, 240
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 105
BspANI GGCC 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 230
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 191
BstNI CCWGG 1 cut(s) 241
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 239
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 1 cut(s) 180
CviJI RGCY 3 cut(s) 103, 263, 305
CviKI_1 RGCY 3 cut(s) 103, 263, 305
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 103
Eco91I GGTNACC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 103
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 191
FaiI YATR 6 cut(s) 126, 147, 288, 309, 323, 355
FaqI GGGAC 1 cut(s) 23
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 105
FspBI CTAG 1 cut(s) 302
GsuI CTGGAG 1 cut(s) 223
HaeIII GGCC 1 cut(s) 263
HinfI GANTC 3 cut(s) 71, 130, 161
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 134, 248
Hpy99I CGWCG 1 cut(s) 161
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 1 cut(s) 311
LmnI GCTCC 2 cut(s) 100, 176
LpnPI CCDG 5 cut(s) 206, 219, 226, 236, 253
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 272
MboII GAAGA 1 cut(s) 85
MfeI CAATTG 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 3 cut(s) 175, 312, 334
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 2 cut(s) 247, 253
MslI CAYNNNNRTG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 241
MunI CAATTG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 272
PceI AGGCCT 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PfeI GAWTC 3 cut(s) 71, 130, 161
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 239
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 285
SacI GAGCTC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 105
SetI ASST 5 cut(s) 105, 239, 245, 274, 307
SfaNI GCATC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 3 cut(s) 175, 312, 334
SseBI AGGCCT 1 cut(s) 263
SspMI CTAG 1 cut(s) 302
SstI GAGCTC 1 cut(s) 105
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 239
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 87
TasI AATT 3 cut(s) 175, 312, 334
TfiI GAWTC 3 cut(s) 71, 130, 161
TseFI GTSAC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 173
XapI RAATTY 1 cut(s) 334
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.