FvH4_5g37740
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013685
Physical Location & Seq
Forward (+)
27786863 .. 27789643
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37740.t3

Sequence Viewer

Length: 1092 bp
ATGGCGCACACTCTCAGAAGCTCACTGCTTCTTCCCAGGCCCTGTTTTCACAACTCACTCTCCCTCTTCTTCTACTCATCCAAAACCTTAGAACCAAATCCCACGGCTGATTACCTAATAAACCACCACCAGTTTTCCCAAGAAGCTGCTCTCAAGGCCTCGGCAACCATCGCTTATCTCAAAAACCCAGCAGACTCGGATTCGGTGCTTTCATTTCTCAAGCAGAGCGGCTTCTCCAAAACCCATCTCGAGGGAGTTGTTCAAAAGACCCCCAGAATTCTATGTGCCAATCTCGACACTTCCATCAAACCCAAAATCAAGATTTTCCAAGATTTGGGCTTTTCGGATTCCGACATTGCTGACATTATATCCTGTGATCCCTGGATTCTGTGGCGGAGTGCCGATAATAAGCTTGGTCCTGCTCTTGTGGTGCTGAAGAGCATTTTGGGCTCCAATGCTGAGGTGTGTAAGTTTTTAAAATTAAGTAGGCGTTATCTTCAACATGATTTGGATAAGAGTTTGAAGGCTAATATGGAGTTGTTAGAGGGTTTTGGTATTAGTTCCTCGCAGCTGGTTAAGTATATGTTTCGATTTCCTAGACTGTTTTTGCATAAGCAGAAGGCCATTTTGGAATTTGTTGAAAGAGTTGATAAGATGGAGTTTGATAGGAGTTCCAGGTTGTTCATATCAGCAATTGGGATCATGAGTTCCTTGAAGGTGGAGACCTTGGAACTTAAGAAGAAGCTTTTCCGGAGTTTGGGGTTTTCGGAAAAGGATGTCTTCACTATGTTTAAGAGGTCGCCTATGGTGTTTGGTATATCTGAGAAGAAACTTAAGGAGGTAACAGAGTTGCTGGTCAGTGCGGGGCAGTTTCACGTCCCATATCTGCTTAGTAACCCGGAGTTGCTTATGTATAGTGTTGAGCGGAGGTTGAAACCGAGGCTCAAAGTTTTGGAGATTTTGGAAAAGAAAAATTTACTCGAGGAAAAACCCAAGCTGAACACAGTCTGCAAGTACTCTGAGCAGAAGTTTGCTGAAAAATTTATTCTTCCTTATGCAAATGAACTTGGAAAGGATATGAGGTATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

364

Amino Acids

41.65

Weight (kDa)

9.47

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 70 - 136 9.2e-12 mTERF
mTERF PF02536 134 - 345 7e-24 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37740 FvH4_5g37740 FvH4_5g37740
malus_domestica MD08G1180700.v1.1 MD15G1366400.v1.1
prunus_persica Prupe.1G514300_v2.0.a1 Prupe.7G221900_v2.0.a1
pyrus_communis pycom08g15450
rosa_chinensis RchiOBHm_Chr7g0239481
rosa_laevigata RLG00000000754
rosa_multiflora Rmu_sc0003379.1_g000006
rosa_roxburghii Rroxscaffold_3G00220900
rosa_rugosa Rorug07G0328200
rosa_samantha Rh7AG481700 Rh7BG454600 Rh7CG499700 Rh7DG467800
rosa_wichuraiana Rw7G040360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 334
AccBSI CCGCTC 2 cut(s) 228, 925
AccIII TCCGGA 1 cut(s) 750
AciI CCGC 4 cut(s) 228, 394, 863, 925
AclWI GGATC 2 cut(s) 371, 707
AcsI RAATTY 4 cut(s) 276, 632, 973, 1040
AcuI CTGAAG 1 cut(s) 455
AfaI GTAC 1 cut(s) 1016
AfiI CCNNNNNNNGG 3 cut(s) 250, 334, 757
AflII CTTAAG 2 cut(s) 734, 833
AgsI TTSAA 6 cut(s) 263, 500, 523, 641, 715, 934
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 3 cut(s) 35, 380, 674
AjuI GAANNNNNNNTTGG 4 cut(s) 428, 460, 611, 643
AloI GAACNNNNNNTCC 2 cut(s) 691, 723
AluBI AGCT 6 cut(s) 21, 146, 412, 571, 745, 997
AluI AGCT 6 cut(s) 21, 146, 412, 571, 745, 997
Alw26I GTCTC 1 cut(s) 716
AlwI GGATC 2 cut(s) 371, 707
AlwNI CAGNNNCTG 1 cut(s) 42
Ama87I CYCGRG 2 cut(s) 248, 980
Aor13HI TCCGGA 1 cut(s) 750
AoxI GGCC 3 cut(s) 38, 156, 621
ApeKI GCWGC 2 cut(s) 146, 568
ApoI RAATTY 4 cut(s) 276, 632, 973, 1040
Asp700I GAANNNNTTC 1 cut(s) 746
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 39, 416
AsuC2I CCSGG 1 cut(s) 899
AvaI CYCGRG 2 cut(s) 248, 980
AvaII GGWCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 772
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 2 cut(s) 133, 580
BccI CCATC 4 cut(s) 176, 252, 311, 649
BceAI ACGGC 1 cut(s) 120
BciT130I CCWGG 3 cut(s) 37, 382, 676
BcnI CCSGG 1 cut(s) 899
BcoDI GTCTC 1 cut(s) 716
BfaI CTAG 1 cut(s) 597
BfrI CTTAAG 2 cut(s) 734, 833
BisI GCNGC 3 cut(s) 147, 229, 569
BlsI GCNGC 3 cut(s) 148, 230, 570
BmcAI AGTACT 1 cut(s) 1016
Bme1390I CCNGG 4 cut(s) 37, 382, 676, 899
Bme18I GGWCC 1 cut(s) 416
BmeT110I CYCGRG 2 cut(s) 248, 980
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 2 cut(s) 39, 416
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 4 cut(s) 37, 382, 676, 899
BpiI GAAGAC 1 cut(s) 772
Bpu10I CCTNAGC 1 cut(s) 459
BpuEI CTTGAG 2 cut(s) 137, 203
BpuMI CCSGG 1 cut(s) 899
BsaI GGTCTC 1 cut(s) 716
BsaJI CCNNGG 6 cut(s) 35, 102, 159, 380, 726, 938
BsaWI WCCGGW 1 cut(s) 750
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 334, 757
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 354
BseAI TCCGGA 1 cut(s) 750
BseBI CCWGG 3 cut(s) 37, 382, 676
BseDI CCNNGG 6 cut(s) 35, 102, 159, 380, 726, 938
BseGI GGATG 2 cut(s) 77, 781
BseLI CCNNNNNNNGG 3 cut(s) 250, 334, 757
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 4 cut(s) 28, 450, 813, 1011
BseNI ACTGG 1 cut(s) 130
BseXI GCAGC 2 cut(s) 133, 580
BseYI CCCAGC 1 cut(s) 187
BshFI GGCC 3 cut(s) 40, 158, 623
BsiHKCI CYCGRG 2 cut(s) 248, 980
BsiSI CCGG 2 cut(s) 751, 899
BslFI GGGAC 1 cut(s) 863
BslI CCNNNNNNNGG 3 cut(s) 250, 334, 757
BsmAI GTCTC 1 cut(s) 716
BsmFI GGGAC 1 cut(s) 863
BsnI GGCC 3 cut(s) 40, 158, 623
Bso31I GGTCTC 1 cut(s) 716
BsoBI CYCGRG 2 cut(s) 248, 980
Bsp1286I GDGCHC 1 cut(s) 452
Bsp13I TCCGGA 1 cut(s) 750
Bsp143I GATC 2 cut(s) 376, 699
BspACI CCGC 4 cut(s) 228, 394, 863, 925
BspANI GGCC 3 cut(s) 40, 158, 623
BspCNI CTCAG 4 cut(s) 27, 451, 814, 1012
BspEI TCCGGA 1 cut(s) 750
BspHI TCATGA 1 cut(s) 702
BspLI GGNNCC 1 cut(s) 451
BspPI GGATC 2 cut(s) 371, 707
BspQI GCTCTTC 1 cut(s) 431
BspTI CTTAAG 2 cut(s) 734, 833
BspTNI GGTCTC 1 cut(s) 716
BsrBI CCGCTC 2 cut(s) 228, 925
BsrDI GCAATG 1 cut(s) 354
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 6 cut(s) 35, 102, 159, 380, 726, 938
BssMI GATC 2 cut(s) 376, 699
BssT1I CCWWGG 1 cut(s) 726
Bst2UI CCWGG 3 cut(s) 37, 382, 676
Bst4CI ACNGT 2 cut(s) 603, 1006
Bst6I CTCTTC 2 cut(s) 71, 431
BstAFI CTTAAG 2 cut(s) 734, 833
BstDEI CTNAG 6 cut(s) 14, 88, 459, 822, 890, 1020
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 77, 781
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 379, 702
BstMAI GTCTC 1 cut(s) 716
BstMBI GATC 2 cut(s) 376, 699
BstMWI GCNNNNNNNGC 3 cut(s) 155, 170, 447
BstNI CCWGG 3 cut(s) 37, 382, 676
BstSCI CCNGG 4 cut(s) 35, 380, 674, 897
BstV1I GCAGC 2 cut(s) 133, 580
BstV2I GAAGAC 1 cut(s) 772
BsuRI GGCC 3 cut(s) 40, 158, 623
BtgI CCRYGG 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 154
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 2 cut(s) 77, 781
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 2 cut(s) 23, 865
CaiI CAGNNNCTG 1 cut(s) 42
CciI TCATGA 1 cut(s) 702
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 39, 416
Csp6I GTAC 1 cut(s) 1015
CviAII CATG 2 cut(s) 503, 703
CviQI GTAC 1 cut(s) 1015
DdeI CTNAG 6 cut(s) 14, 88, 459, 822, 890, 1020
DpnI GATC 2 cut(s) 378, 701
DpnII GATC 2 cut(s) 376, 699
DraI TTTAAA 1 cut(s) 477
Eam1104I CTCTTC 2 cut(s) 71, 431
EarI CTCTTC 2 cut(s) 71, 431
EciI GGCGGA 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 726
Eco147I AGGCCT 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 716
Eco47I GGWCC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 455
Eco88I CYCGRG 2 cut(s) 248, 980
EcoO109I RGGNCCY 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 276
EcoRII CCWGG 3 cut(s) 35, 380, 674
EcoT14I CCWWGG 1 cut(s) 726
EcoT38I GRGCYC 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 726
FaeI CATG 2 cut(s) 506, 706
FalI AAGNNNNNCTT 2 cut(s) 764, 796
FaqI GGGAC 1 cut(s) 863
FatI CATG 2 cut(s) 502, 702
FauI CCCGC 1 cut(s) 856
Fnu4HI GCNGC 3 cut(s) 147, 229, 569
FokI GGATG 2 cut(s) 64, 788
FriOI GRGCYC 1 cut(s) 452
Fsp4HI GCNGC 3 cut(s) 147, 229, 569
FspBI CTAG 1 cut(s) 597
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 147, 229, 569
GsaI CCCAGC 1 cut(s) 191
HaeIII GGCC 3 cut(s) 40, 158, 623
HapII CCGG 2 cut(s) 751, 899
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 506, 706
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 2 cut(s) 410, 743
HinfI GANTC 4 cut(s) 194, 200, 347, 385
HpaII CCGG 2 cut(s) 751, 899
Hpy188I TCNGA 7 cut(s) 17, 199, 346, 352, 769, 823, 1021
Hpy188III TCNNGA 5 cut(s) 248, 293, 319, 703, 751
HpyAV CCTTC 3 cut(s) 517, 613, 709
HpyCH4III ACNGT 2 cut(s) 603, 1006
HpyCH4IV ACGT 1 cut(s) 876
HpyCH4V TGCA 3 cut(s) 610, 1011, 1058
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 170, 447
HpyF3I CTNAG 6 cut(s) 14, 88, 459, 822, 890, 1020
HpySE526I ACGT 1 cut(s) 876
Hsp92II CATG 2 cut(s) 506, 706
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 750
Kzo9I GATC 2 cut(s) 376, 699
LguI GCTCTTC 1 cut(s) 431
LmnI GCTCC 1 cut(s) 455
Lsp1109I GCAGC 2 cut(s) 133, 580
MaeI CTAG 1 cut(s) 597
MaeII ACGT 1 cut(s) 876
MaeIII GTNAC 2 cut(s) 841, 893
MalI GATC 2 cut(s) 378, 701
MbiI CCGCTC 2 cut(s) 228, 925
MboI GATC 2 cut(s) 376, 699
MboII GAAGA 9 cut(s) 23, 58, 61, 448, 488, 751, 772, 838, 1040
MfeI CAATTG 1 cut(s) 693
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 6 cut(s) 276, 479, 632, 693, 973, 1040
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 375
MroI TCCGGA 1 cut(s) 750
MroXI GAANNNNTTC 1 cut(s) 746
MseI TTAA 6 cut(s) 476, 482, 576, 735, 792, 834
MspA1I CMGCKG 1 cut(s) 571
MspCI CTTAAG 2 cut(s) 734, 833
MspI CCGG 2 cut(s) 751, 899
MspR9I CCNGG 4 cut(s) 37, 382, 676, 899
MunI CAATTG 1 cut(s) 693
MvaI CCWGG 3 cut(s) 37, 382, 676
MwoI GCNNNNNNNGC 3 cut(s) 155, 170, 447
NciI CCSGG 1 cut(s) 899
NdeII GATC 2 cut(s) 376, 699
NlaIII CATG 2 cut(s) 506, 706
NlaIV GGNNCC 1 cut(s) 451
NmeAIII GCCGAG 1 cut(s) 140
PaeR7I CTCGAG 2 cut(s) 248, 980
PagI TCATGA 1 cut(s) 702
PceI AGGCCT 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 746
PfeI GAWTC 3 cut(s) 200, 347, 385
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 3 cut(s) 148, 230, 570
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp6I CCWGG 3 cut(s) 35, 380, 674
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 3 cut(s) 35, 380, 674
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 2 cut(s) 39, 416
PspXI VCTCGAGB 1 cut(s) 980
PstNI CAGNNNCTG 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 571
RsaI GTAC 1 cut(s) 1016
RsaNI GTAC 1 cut(s) 1015
SapI GCTCTTC 1 cut(s) 431
SaqAI TTAA 6 cut(s) 476, 482, 576, 735, 792, 834
SatI GCNGC 3 cut(s) 147, 229, 569
Sau3AI GATC 2 cut(s) 376, 699
Sau96I GGNCC 2 cut(s) 39, 416
ScaI AGTACT 1 cut(s) 1016
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 4 cut(s) 37, 382, 676, 899
SduI GDGCHC 1 cut(s) 452
Sfr274I CTCGAG 2 cut(s) 248, 980
SinI GGWCC 1 cut(s) 416
SlaI CTCGAG 2 cut(s) 248, 980
SmlI CTYRAG 6 cut(s) 152, 218, 248, 734, 833, 980
SmoI CTYRAG 6 cut(s) 152, 218, 248, 734, 833, 980
Sse9I AATT 6 cut(s) 276, 479, 632, 693, 973, 1040
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 4 cut(s) 228, 394, 863, 925
SspMI CTAG 1 cut(s) 597
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 4 cut(s) 35, 380, 674, 897
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 2 cut(s) 603, 1006
TaiI ACGT 1 cut(s) 879
TaqI TCGA 4 cut(s) 249, 294, 589, 981
TasI AATT 6 cut(s) 276, 479, 632, 693, 973, 1040
TatI WGTACW 1 cut(s) 1014
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 3 cut(s) 200, 347, 385
Tru1I TTAA 6 cut(s) 476, 482, 576, 735, 792, 834
Tru9I TTAA 6 cut(s) 476, 482, 576, 735, 792, 834
TscAI CASTG 2 cut(s) 30, 865
TseI GCWGC 2 cut(s) 146, 568
TspDTI ATGAA 3 cut(s) 201, 673, 1077
TspRI CASTG 2 cut(s) 30, 865
Van91I CCANNNNNTGG 1 cut(s) 334
Vha464I CTTAAG 2 cut(s) 734, 833
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 4 cut(s) 276, 632, 973, 1040
XhoI CTCGAG 2 cut(s) 248, 980
XmnI GAANNNNTTC 1 cut(s) 746
XspI CTAG 1 cut(s) 597
ZrmI AGTACT 1 cut(s) 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.