Rh7BG454600
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013685
Physical Location & Seq
Forward (+)
53596389 .. 53606811
10423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG454600.1

Sequence Viewer

Length: 663 bp
ATGGCATTCTCTCTCAGAACCTCGTCGCTTCTTCCCAGGCCCTGTTTTCACAGCTCACTCTCCCTGTTGTTTTACTCGTCCAAAACCTCAGAATCAAATCCAACAGCTGAATACTTAATTAACCACCACCAGTTTTCCCCTGAAGCCGCTTTTAAGGCCTCGTCAACTATCGCTTATCTCAGAAACCCAGCAGAGTCGGATTTGGTGCTTTCATTTCTCAAGGAGAGTGGTTTCTCCAAAACCCATCTCGAGGGAGTGATTCAAAGGATCCCCAGAATTCTATGTGCCAATCTCGACACTTCCATCAGACCCAAAATCAAGATTTTTCAAGATTTGGGCTTTTCGGATTCCGACATTGCCGAGATTATATCATCTAACCCCTGGATTCTGTGGCGGACTGCCGATAATCGGCTCGGTCCTGCTCTTCTGGTGTTGAAGAGCATTCTGGGTTGCAATGCTGATGTGTGTAAGCTGTTAAAGTTATGTGGGCGTTACCTCCAACATGATTTGGAGAAGAGTTTGAGGGCTAATATGGAGTTGTTAAAGAGTTTGGGGCAGGTTACAAGATTATATACAACTTCATGCAAATCTTTCCTACGTGAAAGTAGGGATAACTATGATCCATTAGCTGGCTGGGTCTATATTGCAAAAACTGCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

220

Amino Acids

24.71

Weight (kDa)

9.02

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 70 - 187 1.7e-15 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37740 FvH4_5g37740 FvH4_5g37740
malus_domestica MD08G1180700.v1.1 MD15G1366400.v1.1
prunus_persica Prupe.1G514300_v2.0.a1 Prupe.7G221900_v2.0.a1
pyrus_communis pycom08g15450
rosa_chinensis RchiOBHm_Chr7g0239481
rosa_laevigata RLG00000000754
rosa_multiflora Rmu_sc0003379.1_g000006
rosa_roxburghii Rroxscaffold_3G00220900
rosa_rugosa Rorug07G0328200
rosa_samantha Rh7AG481700 Rh7BG454600 Rh7CG499700 Rh7DG467800
rosa_wichuraiana Rw7G040360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 547
AccB7I CCANNNNNTGG 1 cut(s) 629
AciI CCGC 2 cut(s) 147, 394
AclWI GGATC 3 cut(s) 262, 275, 614
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 3 cut(s) 250, 408, 629
AgsI TTSAA 3 cut(s) 263, 329, 436
AjnI CCWGG 2 cut(s) 35, 380
AluBI AGCT 4 cut(s) 54, 107, 472, 629
AluI AGCT 4 cut(s) 54, 107, 472, 629
AlwI GGATC 3 cut(s) 262, 275, 614
AlwNI CAGNNNCTG 1 cut(s) 42
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 2 cut(s) 38, 156
ApoI RAATTY 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 39, 416
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 1 cut(s) 416
BamHI GGATCC 1 cut(s) 267
BccI CCATC 2 cut(s) 252, 311
BciT130I CCWGG 2 cut(s) 37, 382
BfuAI ACCTGC 1 cut(s) 547
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 2 cut(s) 37, 382
Bme18I GGWCC 1 cut(s) 416
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 39, 416
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 37, 382
BpuEI CTTGAG 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 599
BsaJI CCNNGG 2 cut(s) 35, 380
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 408, 629
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 2 cut(s) 354, 460
BseBI CCWGG 2 cut(s) 37, 382
BseDI CCNNGG 2 cut(s) 35, 380
BseLI CCNNNNNNNGG 3 cut(s) 250, 408, 629
BseMI GCAATG 2 cut(s) 354, 460
BseMII CTCAG 3 cut(s) 28, 102, 193
BseNI ACTGG 1 cut(s) 130
BseYI CCCAGC 2 cut(s) 187, 633
BshFI GGCC 2 cut(s) 40, 158
BsiHKCI CYCGRG 1 cut(s) 248
BslI CCNNNNNNNGG 3 cut(s) 250, 408, 629
BsmI GAATGC 2 cut(s) 5, 441
BsnI GGCC 2 cut(s) 40, 158
BsoBI CYCGRG 1 cut(s) 248
Bsp143I GATC 2 cut(s) 267, 619
BspACI CCGC 2 cut(s) 147, 394
BspANI GGCC 2 cut(s) 40, 158
BspCNI CTCAG 3 cut(s) 27, 101, 192
BspLI GGNNCC 1 cut(s) 269
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 3 cut(s) 262, 275, 614
BspQI GCTCTTC 2 cut(s) 429, 431
BsrDI GCAATG 2 cut(s) 354, 460
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 35, 380
BssMI GATC 2 cut(s) 267, 619
Bst2UI CCWGG 2 cut(s) 37, 382
Bst6I CTCTTC 3 cut(s) 429, 431, 509
BstAPI GCANNNNNTGC 1 cut(s) 653
BstBAI YACGTR 1 cut(s) 599
BstC8I GCNNGC 1 cut(s) 631
BstDEI CTNAG 3 cut(s) 14, 88, 179
BstKTI GATC 2 cut(s) 270, 622
BstMBI GATC 2 cut(s) 267, 619
BstMWI GCNNNNNNNGC 2 cut(s) 155, 653
BstNI CCWGG 2 cut(s) 37, 382
BstSCI CCNGG 2 cut(s) 35, 380
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
BsuRI GGCC 2 cut(s) 40, 158
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 1 cut(s) 631
CaiI CAGNNNCTG 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 39, 416
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 2 cut(s) 503, 582
DdeI CTNAG 3 cut(s) 14, 88, 179
DpnI GATC 2 cut(s) 269, 621
DpnII GATC 2 cut(s) 267, 619
Eam1104I CTCTTC 3 cut(s) 429, 431, 509
EarI CTCTTC 3 cut(s) 429, 431, 509
EciI GGCGGA 1 cut(s) 409
Eco147I AGGCCT 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 276
EcoRII CCWGG 2 cut(s) 35, 380
FaeI CATG 2 cut(s) 506, 585
FatI CATG 2 cut(s) 502, 581
Fnu4HI GCNGC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
GsaI CCCAGC 2 cut(s) 191, 637
HaeIII GGCC 2 cut(s) 40, 158
Hin1II CATG 2 cut(s) 506, 585
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 5 cut(s) 92, 194, 259, 347, 385
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 7 cut(s) 17, 91, 182, 199, 308, 346, 352
Hpy188III TCNNGA 4 cut(s) 248, 293, 319, 329
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 598
HpyCH4V TGCA 3 cut(s) 453, 585, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 653
HpyF3I CTNAG 3 cut(s) 14, 88, 179
HpySE526I ACGT 1 cut(s) 598
Hsp92II CATG 2 cut(s) 506, 585
Kzo9I GATC 2 cut(s) 267, 619
LguI GCTCTTC 2 cut(s) 429, 431
MaeII ACGT 1 cut(s) 598
MaeIII GTNAC 2 cut(s) 491, 559
MalI GATC 2 cut(s) 269, 621
MboI GATC 2 cut(s) 267, 619
MboII GAAGA 4 cut(s) 23, 416, 448, 526
MflI RGATCY 1 cut(s) 267
MluCI AATT 2 cut(s) 117, 276
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 4 cut(s) 125, 177, 375, 523
MnlI CCTC 6 cut(s) 31, 97, 169, 244, 506, 516
MseI TTAA 5 cut(s) 116, 120, 153, 476, 542
MspA1I CMGCKG 1 cut(s) 107
MspR9I CCNGG 2 cut(s) 37, 382
Mva1269I GAATGC 2 cut(s) 5, 441
MvaI CCWGG 2 cut(s) 37, 382
MwoI GCNNNNNNNGC 2 cut(s) 155, 653
NdeII GATC 2 cut(s) 267, 619
NlaIII CATG 2 cut(s) 506, 585
NlaIV GGNNCC 1 cut(s) 269
NmeAIII GCCGAG 1 cut(s) 385
PacI TTAATTAA 1 cut(s) 120
PaeR7I CTCGAG 1 cut(s) 248
PceI AGGCCT 1 cut(s) 158
PciSI GCTCTTC 2 cut(s) 429, 431
PctI GAATGC 2 cut(s) 5, 441
PfeI GAWTC 4 cut(s) 92, 259, 347, 385
PflMI CCANNNNNTGG 1 cut(s) 629
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Ppu21I YACGTR 1 cut(s) 599
Psp6I CCWGG 2 cut(s) 35, 380
PspFI CCCAGC 2 cut(s) 187, 633
PspGI CCWGG 2 cut(s) 35, 380
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 2 cut(s) 39, 416
PstNI CAGNNNCTG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 267
PvuII CAGCTG 1 cut(s) 107
SapI GCTCTTC 2 cut(s) 429, 431
SaqAI TTAA 5 cut(s) 116, 120, 153, 476, 542
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 2 cut(s) 267, 619
Sau96I GGNCC 2 cut(s) 39, 416
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 37, 382
SetI ASST 9 cut(s) 23, 56, 89, 109, 474, 498, 561, 601, 631
Sfr274I CTCGAG 1 cut(s) 248
SinI GGWCC 1 cut(s) 416
SlaI CTCGAG 1 cut(s) 248
SmlI CTYRAG 2 cut(s) 218, 248
SmoI CTYRAG 2 cut(s) 218, 248
Sse9I AATT 2 cut(s) 117, 276
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 2 cut(s) 147, 394
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 35, 380
TaiI ACGT 1 cut(s) 601
TaqI TCGA 2 cut(s) 249, 294
TaqII GACCGA 1 cut(s) 404
TasI AATT 2 cut(s) 117, 276
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 4 cut(s) 92, 259, 347, 385
Tru1I TTAA 5 cut(s) 116, 120, 153, 476, 542
Tru9I TTAA 5 cut(s) 116, 120, 153, 476, 542
TspDTI ATGAA 2 cut(s) 201, 570
Van91I CCANNNNNTGG 1 cut(s) 629
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 1 cut(s) 276
XcmI CCANNNNNNNNNTGG 1 cut(s) 630
XhoI CTCGAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.