Rmu_sc0003379.1_g000006
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003379.1
OG0013685
Physical Location & Seq
Forward (+)
26267 .. 28321
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003379.1_g000006.1.cds

Sequence Viewer

Length: 1140 bp
atggcgcggtgccgcttaccggatagaggccagagatcggatggaccgatctgcagtcgggtggagtcgccgacgacgtggttgcagcgctgcctagaacctacagttgcaggtgaggtcgctgcccagaaacctgcaacctcaatctcctcggacctcgatcgctgcccagaagcgttttcccctgaagccgcttttaaggcctcgtcaactatcgcttatctcagaaacccagcagagtcggatttggtgctttcatttctcaaggagagtggtttctccaaaacccatctcgagggagtgattcaaaggatccccagaattctatgtgccaatctcaacacttccatcaaaccgaaaatcaagatatttcaagatttgggcttttcggattccgacattgccgagattatatcctctgacccctggattctgtggcggagtgccgataatcggctcggtcctgctcttctggtgttgaagagcattctgggttgcaatgccgatgtgtgtaagctgttaaagctatgtgggcgttacctccaacatgatttggagacgagtttgagggctaatatggagttgttaaagagtttgggtataggttccacgcagcttgttaagtatttgtttcgatttcctagattgtatttgcataagcaggagaccattttggaatttgttgaaagggttgataaaatggggtttgataggaattccgggatgttcatatcagctattgggatcattagttctatgagggtggagacctgggaaatgaaggtgaagcttttccggagtttggggatttcggaaaaggatgtctttgctatgtttaggaggtcgccgcatgtgtttggtatatctgagaggaaacttaaggaggtagtggacctgctggtcagtgctgggaagtttgacatcccgtttgtgattaataatccagagttgcttatgtatagtgttgagcgcagactgaaaccaaggctaaaagttttggagattttggaaaagaacaatttacttgatgaaaaacctaagttgaccacattctgcaagtactccgagcagaagtttgctgaaagatatattcttccttatgcaaatgaacttgggaaacatatgagttatgaatgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

379

Amino Acids

43.09

Weight (kDa)

8.97

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37740 FvH4_5g37740 FvH4_5g37740
malus_domestica MD08G1180700.v1.1 MD15G1366400.v1.1
prunus_persica Prupe.1G514300_v2.0.a1 Prupe.7G221900_v2.0.a1
pyrus_communis pycom08g15450
rosa_chinensis RchiOBHm_Chr7g0239481
rosa_laevigata RLG00000000754
rosa_multiflora Rmu_sc0003379.1_g000006
rosa_roxburghii Rroxscaffold_3G00220900
rosa_rugosa Rorug07G0328200
rosa_samantha Rh7AG481700 Rh7BG454600 Rh7CG499700 Rh7DG467800
rosa_wichuraiana Rw7G040360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 101
AasI GACNNNNNNGTC 1 cut(s) 899
Acc36I ACCTGC 3 cut(s) 101, 142, 903
AccB1I GGYRCC 1 cut(s) 9
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 795
AciI CCGC 5 cut(s) 7, 13, 192, 439, 848
AclWI GGATC 3 cut(s) 307, 320, 752
AcsI RAATTY 3 cut(s) 321, 677, 715
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 1 cut(s) 1061
AfeI AGCGCT 1 cut(s) 89
AfiI CCNNNNNNNGG 6 cut(s) 19, 26, 37, 295, 453, 802
AflII CTTAAG 1 cut(s) 878
AgsI TTSAA 4 cut(s) 308, 374, 481, 686
AjiI CACGTC 1 cut(s) 78
AjnI CCWGG 2 cut(s) 425, 770
AloI GAACNNNNNNTCC 2 cut(s) 736, 768
AluBI AGCT 5 cut(s) 517, 526, 616, 737, 790
AluI AGCT 5 cut(s) 517, 526, 616, 737, 790
Alw26I GTCTC 3 cut(s) 551, 659, 761
AlwI GGATC 3 cut(s) 307, 320, 752
Ama87I CYCGRG 1 cut(s) 293
Aor13HI TCCGGA 1 cut(s) 795
Aor51HI AGCGCT 1 cut(s) 89
AoxI GGCC 2 cut(s) 28, 201
ApeKI GCWGC 5 cut(s) 85, 90, 122, 165, 613
ApoI RAATTY 3 cut(s) 321, 677, 715
ArsI GACNNNNNNTTYG 2 cut(s) 911, 943
AseI ATTAAT 1 cut(s) 936
Asp700I GAANNNNTTC 1 cut(s) 791
AspLEI GCGC 3 cut(s) 7, 90, 972
AspS9I GGNCC 4 cut(s) 44, 154, 461, 892
AsuC2I CCSGG 1 cut(s) 721
AsuHPI GGTGA 2 cut(s) 125, 796
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 4 cut(s) 44, 154, 461, 892
BamHI GGATCC 1 cut(s) 312
BanI GGYRCC 1 cut(s) 9
BbvI GCAGC 5 cut(s) 77, 97, 109, 152, 625
BccI CCATC 3 cut(s) 35, 297, 356
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BciT130I CCWGG 2 cut(s) 427, 772
BcnI CCSGG 1 cut(s) 721
BcoDI GTCTC 3 cut(s) 551, 659, 761
BfaI CTAG 2 cut(s) 95, 642
BfmI CTRYAG 2 cut(s) 52, 102
BfoI RGCGCY 1 cut(s) 91
BfrI CTTAAG 1 cut(s) 878
BfuAI ACCTGC 3 cut(s) 101, 142, 903
BisI GCNGC 8 cut(s) 13, 86, 91, 123, 166, 192, 614, 848
BlsI GCNGC 8 cut(s) 14, 87, 92, 124, 167, 193, 615, 849
BmcAI AGTACT 1 cut(s) 1061
Bme1390I CCNGG 3 cut(s) 427, 721, 772
Bme18I GGWCC 4 cut(s) 44, 154, 461, 892
BmeT110I CYCGRG 1 cut(s) 293
BmgBI CACGTC 1 cut(s) 78
BmgT120I GGNCC 4 cut(s) 44, 154, 461, 892
BmiI GGNNCC 3 cut(s) 11, 314, 607
BmrFI CCNGG 3 cut(s) 427, 721, 772
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 721
BsaI GGTCTC 2 cut(s) 659, 761
BsaJI CCNNGG 4 cut(s) 150, 425, 771, 983
BsaWI WCCGGW 2 cut(s) 19, 795
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 26, 37, 295, 453, 802
Bse3DI GCAATG 2 cut(s) 399, 505
BseAI TCCGGA 1 cut(s) 795
BseBI CCWGG 2 cut(s) 427, 772
BseDI CCNNGG 4 cut(s) 150, 425, 771, 983
BseGI GGATG 4 cut(s) 46, 729, 826, 921
BseLI CCNNNNNNNGG 6 cut(s) 19, 26, 37, 295, 453, 802
BseMI GCAATG 2 cut(s) 399, 505
BseMII CTCAG 2 cut(s) 238, 858
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 5 cut(s) 77, 97, 109, 152, 625
BseYI CCCAGC 2 cut(s) 232, 908
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 2 cut(s) 30, 203
BshNI GGYRCC 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 163
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 3 cut(s) 20, 720, 796
BslI CCNNNNNNNGG 6 cut(s) 19, 26, 37, 295, 453, 802
BsmAI GTCTC 3 cut(s) 551, 659, 761
BsmBI CGTCTC 1 cut(s) 551
BsmI GAATGC 2 cut(s) 486, 1139
BsnI GGCC 2 cut(s) 30, 203
Bso31I GGTCTC 2 cut(s) 659, 761
BsoBI CYCGRG 1 cut(s) 293
Bsp13I TCCGGA 1 cut(s) 795
Bsp143I GATC 5 cut(s) 35, 48, 160, 312, 744
BspACI CCGC 5 cut(s) 7, 13, 192, 439, 848
BspANI GGCC 2 cut(s) 30, 203
BspCNI CTCAG 2 cut(s) 237, 859
BspEI TCCGGA 1 cut(s) 795
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 3 cut(s) 11, 314, 607
BspMAI CTGCAG 1 cut(s) 56
BspMI ACCTGC 3 cut(s) 101, 142, 903
BspPI GGATC 3 cut(s) 307, 320, 752
BspQI GCTCTTC 2 cut(s) 474, 476
BspT107I GGYRCC 1 cut(s) 9
BspTI CTTAAG 1 cut(s) 878
BspTNI GGTCTC 2 cut(s) 659, 761
BsrDI GCAATG 2 cut(s) 399, 505
BssECI CCNNGG 4 cut(s) 150, 425, 771, 983
BssMI GATC 5 cut(s) 35, 48, 160, 312, 744
BssT1I CCWWGG 1 cut(s) 983
Bst2UI CCWGG 2 cut(s) 427, 772
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 474, 476
BstAFI CTTAAG 1 cut(s) 878
BstDEI CTNAG 3 cut(s) 224, 867, 1038
BstF5I GGATG 4 cut(s) 46, 729, 826, 921
BstFNI CGCG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 3 cut(s) 7, 90, 972
BstKTI GATC 5 cut(s) 38, 51, 163, 315, 747
BstMAI GTCTC 3 cut(s) 551, 659, 761
BstMBI GATC 5 cut(s) 35, 48, 160, 312, 744
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 3 cut(s) 200, 523, 532
BstNI CCWGG 2 cut(s) 427, 772
BstNSI RCATGY 1 cut(s) 854
BstSCI CCNGG 3 cut(s) 425, 719, 770
BstSFI CTRYAG 2 cut(s) 52, 102
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 5 cut(s) 77, 97, 109, 152, 625
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuRI GGCC 2 cut(s) 30, 203
BtrI CACGTC 1 cut(s) 78
BtsCI GGATG 4 cut(s) 46, 729, 826, 921
BtsIMutI CAGTG 1 cut(s) 910
BveI ACCTGC 3 cut(s) 101, 142, 903
CfoI GCGC 3 cut(s) 7, 90, 972
Cfr13I GGNCC 4 cut(s) 44, 154, 461, 892
Csp6I GTAC 1 cut(s) 1060
CspCI CAANNNNNGTGG 4 cut(s) 253, 288, 598, 633
CviAII CATG 2 cut(s) 548, 851
CviQI GTAC 1 cut(s) 1060
DdeI CTNAG 3 cut(s) 224, 867, 1038
DpnI GATC 5 cut(s) 37, 50, 162, 314, 746
DpnII GATC 5 cut(s) 35, 48, 160, 312, 744
DrdI GACNNNNNNGTC 1 cut(s) 899
DseDI GACNNNNNNGTC 1 cut(s) 899
Eam1104I CTCTTC 2 cut(s) 474, 476
EarI CTCTTC 2 cut(s) 474, 476
EciI GGCGGA 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 983
Eco147I AGGCCT 1 cut(s) 203
Eco31I GGTCTC 2 cut(s) 659, 761
Eco47I GGWCC 4 cut(s) 44, 154, 461, 892
Eco47III AGCGCT 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 293
EcoRI GAATTC 2 cut(s) 321, 715
EcoRII CCWGG 2 cut(s) 425, 770
EcoT14I CCWWGG 1 cut(s) 983
ErhI CCWWGG 1 cut(s) 983
Esp3I CGTCTC 1 cut(s) 551
FaeI CATG 2 cut(s) 551, 854
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FatI CATG 2 cut(s) 547, 850
FauNDI CATATG 1 cut(s) 1122
Fnu4HI GCNGC 8 cut(s) 13, 86, 91, 123, 166, 192, 614, 848
FokI GGATG 4 cut(s) 53, 736, 833, 908
Fsp4HI GCNGC 8 cut(s) 13, 86, 91, 123, 166, 192, 614, 848
FspBI CTAG 2 cut(s) 95, 642
GlaI GCGC 3 cut(s) 6, 89, 971
GluI GCNGC 8 cut(s) 13, 86, 91, 123, 166, 192, 614, 848
GsaI CCCAGC 2 cut(s) 236, 912
HaeII RGCGCY 1 cut(s) 91
HaeIII GGCC 2 cut(s) 30, 203
HapII CCGG 3 cut(s) 20, 720, 796
HhaI GCGC 3 cut(s) 7, 90, 972
Hin1II CATG 2 cut(s) 551, 854
Hin6I GCGC 3 cut(s) 5, 88, 970
HinP1I GCGC 3 cut(s) 5, 88, 970
HincII GTYRAC 2 cut(s) 210, 1044
HindII GTYRAC 2 cut(s) 210, 1044
HindIII AAGCTT 1 cut(s) 788
HinfI GANTC 5 cut(s) 65, 239, 304, 392, 430
HpaII CCGG 3 cut(s) 20, 720, 796
HphI GGTGA 2 cut(s) 125, 796
Hpy166II GTNNAC 3 cut(s) 210, 892, 1044
Hpy188III TCNNGA 5 cut(s) 293, 364, 374, 796, 944
Hpy8I GTNNAC 3 cut(s) 210, 892, 1044
Hpy99I CGWCG 2 cut(s) 76, 79
HpyAV CCTTC 1 cut(s) 775
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 8 cut(s) 54, 85, 110, 137, 498, 655, 1056, 1103
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 523, 532
HpyF3I CTNAG 3 cut(s) 224, 867, 1038
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 2 cut(s) 551, 854
HspAI GCGC 3 cut(s) 5, 88, 970
Kpn2I TCCGGA 1 cut(s) 795
Kzo9I GATC 5 cut(s) 35, 48, 160, 312, 744
LguI GCTCTTC 2 cut(s) 474, 476
Lsp1109I GCAGC 5 cut(s) 77, 97, 109, 152, 625
MaeI CTAG 2 cut(s) 95, 642
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 536
MalI GATC 5 cut(s) 37, 50, 162, 314, 746
MboI GATC 5 cut(s) 35, 48, 160, 312, 744
MboII GAAGA 3 cut(s) 461, 493, 1085
MflI RGATCY 1 cut(s) 312
MluCI AATT 4 cut(s) 321, 677, 715, 1018
MlyI GAGTC 2 cut(s) 74, 248
MmeI TCCRAC 3 cut(s) 222, 420, 568
MroI TCCGGA 1 cut(s) 795
MroXI GAANNNNTTC 1 cut(s) 791
MseI TTAA 6 cut(s) 198, 521, 587, 621, 879, 936
MspCI CTTAAG 1 cut(s) 878
MspI CCGG 3 cut(s) 20, 720, 796
MspR9I CCNGG 3 cut(s) 427, 721, 772
Mva1269I GAATGC 2 cut(s) 486, 1139
MvaI CCWGG 2 cut(s) 427, 772
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 200, 523, 532
NciI CCSGG 1 cut(s) 721
NdeI CATATG 1 cut(s) 1122
NdeII GATC 5 cut(s) 35, 48, 160, 312, 744
NlaIII CATG 2 cut(s) 551, 854
NlaIV GGNNCC 3 cut(s) 11, 314, 607
NmeAIII GCCGAG 1 cut(s) 430
NspI RCATGY 1 cut(s) 854
PaeR7I CTCGAG 1 cut(s) 293
PaqCI CACCTGC 1 cut(s) 101
PceI AGGCCT 1 cut(s) 203
PciSI GCTCTTC 2 cut(s) 474, 476
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 74
PctI GAATGC 2 cut(s) 486, 1139
PdmI GAANNNNTTC 1 cut(s) 791
PfeI GAWTC 3 cut(s) 304, 392, 430
PfoI TCCNGGA 1 cut(s) 719
PkrI GCNGC 8 cut(s) 14, 87, 92, 124, 167, 193, 615, 849
Ple19I CGATCG 1 cut(s) 163
PleI GAGTC 2 cut(s) 73, 247
PpsI GAGTC 2 cut(s) 73, 247
PshBI ATTAAT 1 cut(s) 936
Psp6I CCWGG 2 cut(s) 425, 770
PspFI CCCAGC 2 cut(s) 232, 908
PspGI CCWGG 2 cut(s) 425, 770
PspN4I GGNNCC 3 cut(s) 11, 314, 607
PspPI GGNCC 4 cut(s) 44, 154, 461, 892
PstI CTGCAG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 312
PvuI CGATCG 1 cut(s) 163
RsaI GTAC 1 cut(s) 1061
RsaNI GTAC 1 cut(s) 1060
SapI GCTCTTC 2 cut(s) 474, 476
SaqAI TTAA 6 cut(s) 198, 521, 587, 621, 879, 936
SatI GCNGC 8 cut(s) 13, 86, 91, 123, 166, 192, 614, 848
Sau3AI GATC 5 cut(s) 35, 48, 160, 312, 744
Sau96I GGNCC 4 cut(s) 44, 154, 461, 892
ScaI AGTACT 1 cut(s) 1061
SchI GAGTC 2 cut(s) 74, 248
ScrFI CCNGG 3 cut(s) 427, 721, 772
SfcI CTRYAG 2 cut(s) 52, 102
Sfr274I CTCGAG 1 cut(s) 293
SinI GGWCC 4 cut(s) 44, 154, 461, 892
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 3 cut(s) 263, 293, 878
SmoI CTYRAG 3 cut(s) 263, 293, 878
Sse9I AATT 4 cut(s) 321, 677, 715, 1018
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 5 cut(s) 7, 13, 192, 439, 848
SspMI CTAG 2 cut(s) 95, 642
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 3 cut(s) 425, 719, 770
StyI CCWWGG 1 cut(s) 983
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 80
TaqI TCGA 3 cut(s) 159, 294, 634
TaqII GACCGA 2 cut(s) 61, 449
TasI AATT 4 cut(s) 321, 677, 715, 1018
TatI WGTACW 1 cut(s) 1059
TauI GCSGC 3 cut(s) 15, 194, 850
TfiI GAWTC 3 cut(s) 304, 392, 430
Tru1I TTAA 6 cut(s) 198, 521, 587, 621, 879, 936
Tru9I TTAA 6 cut(s) 198, 521, 587, 621, 879, 936
TscAI CASTG 1 cut(s) 910
TseI GCWGC 5 cut(s) 85, 90, 122, 165, 613
TspDTI ATGAA 5 cut(s) 246, 718, 794, 1044, 1122
TspRI CASTG 1 cut(s) 910
Vha464I CTTAAG 1 cut(s) 878
VpaK11BI GGWCC 4 cut(s) 44, 154, 461, 892
VspI ATTAAT 1 cut(s) 936
XapI RAATTY 3 cut(s) 321, 677, 715
XceI RCATGY 1 cut(s) 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 791
XspI CTAG 2 cut(s) 95, 642
ZrmI AGTACT 1 cut(s) 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.