Rroxscaffold_3G00220900
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013685
Physical Location & Seq
Reverse (-)
3505456 .. 3508658
3203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220900.1

Sequence Viewer

Length: 1383 bp
ATGGTGCACACAAATGTTAAATTTGTGGTCGGTGTGGTTGGGAATGTCATTTCTGGTAGGCTTTTCCTCTCCCCAATTCCTATGTTCATACAAATATGGAGAAAAAAAGATGTGGAAGCTTTCGATCTAAAACCTTACAACGGTGTTGAACTGTTTAAAACCCTCACAGGCAAGTTCTACTTCAACACCAATCTCTTTCGTGTTTCTCATTTGATATGCAAAACCCTGCTAATAACAAAGCCTCGTGCAAAACATTTCACCTCAAAAACCCAGATCAACAAAACACTCATGGCACTCTCTCTCAGAACCTCGTTGCTTCTTCCCAGGCCCTGTTTCCACAGCTCACTCTCCCTCTTGTTTTACTCGTCCAAAACCTCAGAATCAAATCCCACAGCTGAATACTTAATTAATCACCACCAGTTTTCCCCTGAAGCCGCTTTTAAGGCCTCGTCAACTATCGCTTATCTTAAAAACCCAGCAGAGTCGGATTTGGTGCTTTCATTTCTCAAGGAGAGTGGTTTCTCCAAAACCCATCTCGAGGGAGTGATTCAAAGGATCCCCAGAATTCTATGTGCCAATCTCGACACTTCCATCAAACCCAAAATCAAGATTTTTCAAGATTTGGGCTTTTCGGATTCCGACATTGCCGAGATTATATCCTCTGACCCCTGGATTCTGTGGCGGAGTGCCGATAATCGGCTCGGTCCTGCTCTTCTGGTGTTGAAGAGCATTCTGGGTTGCAATGCCGATGTGTGTAAGCTGTTAAAGTTATGTGGGCGTTACCTCCAACATGATTTGGAGAAGAGTTTGAGGGCTAATATGGAGTTGTTAAAGAGTTTGGGTATAGGTTCCACGCAGCTTGTTAAGTATTTGTTTCGATTTCCTAGATTGTATTTGCATAAGCAGGAGACCATTTGGGAATTTGTTGAAAGGGTTGATAAAATGGGGTTTGATAGGAATTCCGGGATGTTCATATCAGCTATTGGGATCATTAGTTCTATGAGGGTGGAGACCTGGGAAATGAAGGTGAAGCTTTTCCGGAGTTTGGGGATTTCGGAAAAGGATGTCTTTGCTATGTTTAGGAGGTCGCCGCATGTGTTTGGTATATCTGAGAGAAAACTTAAGGAGGTAGTAGACCTGCTGATCAGTGCTGGGAAGTTTGACATCCCGTTTGTGATTAACAATCCGGAGTTGCTTATGTATAGTGTTGAGTGCAGGCTGAAACCAAGGCTAAAAGTTTTGGAGATTTTGGAAAAGAACAATTTACTTGATGAAAAACCTAAGTTGACCACATTCTGCAAGTACTCCGAGCAGAAGTTTGCTGAAAGATATATTCTTCCTTATGCAAATGAACTTGGGAAACATATGAGTAATGAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

460

Amino Acids

52.72

Weight (kDa)

9.48

Isoelectric Point (pI)

27.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 166 - 320 6.7e-19 mTERF
mTERF PF02536 235 - 441 6.7e-22 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37740 FvH4_5g37740 FvH4_5g37740
malus_domestica MD08G1180700.v1.1 MD15G1366400.v1.1
prunus_persica Prupe.1G514300_v2.0.a1 Prupe.7G221900_v2.0.a1
pyrus_communis pycom08g15450
rosa_chinensis RchiOBHm_Chr7g0239481
rosa_laevigata RLG00000000754
rosa_multiflora Rmu_sc0003379.1_g000006
rosa_roxburghii Rroxscaffold_3G00220900
rosa_rugosa Rorug07G0328200
rosa_samantha Rh7AG481700 Rh7BG454600 Rh7CG499700 Rh7DG467800
rosa_wichuraiana Rw7G040360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1146
AccI GTMKAC 1 cut(s) 1134
AccIII TCCGGA 2 cut(s) 1038, 1186
AciI CCGC 3 cut(s) 435, 682, 1091
AclWI GGATC 3 cut(s) 550, 563, 995
AcsI RAATTY 4 cut(s) 20, 564, 920, 958
AcuI CTGAAG 1 cut(s) 450
AfaI GTAC 1 cut(s) 1304
AfiI CCNNNNNNNGG 4 cut(s) 140, 538, 696, 1045
AflII CTTAAG 1 cut(s) 1121
AgsI TTSAA 6 cut(s) 149, 184, 551, 617, 724, 929
AjnI CCWGG 3 cut(s) 323, 668, 1013
AloI GAACNNNNNNTCC 2 cut(s) 979, 1011
AluBI AGCT 7 cut(s) 119, 342, 395, 760, 859, 980, 1033
AluI AGCT 7 cut(s) 119, 342, 395, 760, 859, 980, 1033
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 902, 1004
Alw44I GTGCAC 1 cut(s) 5
AlwI GGATC 3 cut(s) 550, 563, 995
AlwNI CAGNNNCTG 1 cut(s) 330
Ama87I CYCGRG 1 cut(s) 536
Aor13HI TCCGGA 2 cut(s) 1038, 1186
AoxI GGCC 2 cut(s) 326, 444
ApaLI GTGCAC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 856
ApoI RAATTY 4 cut(s) 20, 564, 920, 958
ArsI GACNNNNNNTTYG 2 cut(s) 1154, 1186
AseI ATTAAT 1 cut(s) 408
Asp700I GAANNNNTTC 1 cut(s) 1034
AspS9I GGNCC 2 cut(s) 327, 704
AsuC2I CCSGG 1 cut(s) 964
AsuHPI GGTGA 3 cut(s) 250, 404, 1039
AvaI CYCGRG 1 cut(s) 536
AvaII GGWCC 1 cut(s) 704
BaeGI GKGCMC 1 cut(s) 9
BamHI GGATCC 1 cut(s) 555
BauI CACGAG 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 868
BccI CCATC 2 cut(s) 540, 599
BciT130I CCWGG 3 cut(s) 325, 670, 1015
BclI TGATCA 1 cut(s) 1143
BcnI CCSGG 1 cut(s) 964
BcoDI GTCTC 2 cut(s) 902, 1004
BfaI CTAG 1 cut(s) 885
BfrI CTTAAG 1 cut(s) 1121
BfuAI ACCTGC 1 cut(s) 1146
BisI GCNGC 3 cut(s) 435, 857, 1091
BlsI GCNGC 3 cut(s) 436, 858, 1092
BmcAI AGTACT 1 cut(s) 1304
Bme1390I CCNGG 4 cut(s) 325, 670, 964, 1015
Bme18I GGWCC 1 cut(s) 704
BmeT110I CYCGRG 1 cut(s) 536
BmgT120I GGNCC 2 cut(s) 327, 704
BmiI GGNNCC 2 cut(s) 557, 850
BmrFI CCNGG 4 cut(s) 325, 670, 964, 1015
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 964
BsaI GGTCTC 2 cut(s) 902, 1004
BsaJI CCNNGG 4 cut(s) 323, 668, 1014, 1226
BsaWI WCCGGW 2 cut(s) 1038, 1186
Bsc4I CCNNNNNNNGG 4 cut(s) 140, 538, 696, 1045
Bse1I ACTGG 1 cut(s) 418
Bse3DI GCAATG 2 cut(s) 642, 748
BseAI TCCGGA 2 cut(s) 1038, 1186
BseBI CCWGG 3 cut(s) 325, 670, 1015
BseDI CCNNGG 4 cut(s) 323, 668, 1014, 1226
BseGI GGATG 3 cut(s) 972, 1069, 1164
BseLI CCNNNNNNNGG 4 cut(s) 140, 538, 696, 1045
BseMI GCAATG 2 cut(s) 642, 748
BseMII CTCAG 3 cut(s) 316, 390, 1101
BseNI ACTGG 1 cut(s) 418
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 1 cut(s) 868
BseYI CCCAGC 2 cut(s) 475, 1151
BsgI GTGCAG 1 cut(s) 1234
BshFI GGCC 2 cut(s) 328, 446
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 536
BsiSI CCGG 3 cut(s) 963, 1039, 1187
BslI CCNNNNNNNGG 4 cut(s) 140, 538, 696, 1045
BsmAI GTCTC 2 cut(s) 902, 1004
BsmI GAATGC 2 cut(s) 729, 1382
BsnI GGCC 2 cut(s) 328, 446
Bso31I GGTCTC 2 cut(s) 902, 1004
BsoBI CYCGRG 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 9
Bsp13I TCCGGA 2 cut(s) 1038, 1186
Bsp143I GATC 5 cut(s) 124, 273, 555, 987, 1143
BspACI CCGC 3 cut(s) 435, 682, 1091
BspANI GGCC 2 cut(s) 328, 446
BspCNI CTCAG 3 cut(s) 315, 389, 1102
BspEI TCCGGA 2 cut(s) 1038, 1186
BspLI GGNNCC 2 cut(s) 557, 850
BspMI ACCTGC 1 cut(s) 1146
BspPI GGATC 3 cut(s) 550, 563, 995
BspQI GCTCTTC 2 cut(s) 717, 719
BspTI CTTAAG 1 cut(s) 1121
BspTNI GGTCTC 2 cut(s) 902, 1004
BsrDI GCAATG 2 cut(s) 642, 748
BsrI ACTGG 1 cut(s) 418
BssECI CCNNGG 4 cut(s) 323, 668, 1014, 1226
BssMI GATC 5 cut(s) 124, 273, 555, 987, 1143
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 1226
Bst2BI CACGAG 1 cut(s) 243
Bst2UI CCWGG 3 cut(s) 325, 670, 1015
Bst4CI ACNGT 2 cut(s) 143, 153
Bst6I CTCTTC 3 cut(s) 717, 719, 797
BstAFI CTTAAG 1 cut(s) 1121
BstC8I GCNNGC 1 cut(s) 1217
BstDEI CTNAG 4 cut(s) 302, 376, 1110, 1281
BstF5I GGATG 3 cut(s) 972, 1069, 1164
BstKTI GATC 5 cut(s) 127, 276, 558, 990, 1146
BstMAI GTCTC 2 cut(s) 902, 1004
BstMBI GATC 5 cut(s) 124, 273, 555, 987, 1143
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstNI CCWGG 3 cut(s) 325, 670, 1015
BstNSI RCATGY 1 cut(s) 1097
BstSCI CCNGG 4 cut(s) 323, 668, 962, 1013
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 868
BstX2I RGATCY 1 cut(s) 555
BstYI RGATCY 1 cut(s) 555
BsuRI GGCC 2 cut(s) 328, 446
BtsCI GGATG 3 cut(s) 972, 1069, 1164
BtsIMutI CAGTG 1 cut(s) 1153
BveI ACCTGC 1 cut(s) 1146
Cac8I GCNNGC 1 cut(s) 1217
CaiI CAGNNNCTG 1 cut(s) 330
Cfr13I GGNCC 2 cut(s) 327, 704
Csp6I GTAC 1 cut(s) 1303
CspCI CAANNNNNGTGG 4 cut(s) 496, 531, 841, 876
CviAII CATG 3 cut(s) 289, 791, 1094
CviQI GTAC 1 cut(s) 1303
DdeI CTNAG 4 cut(s) 302, 376, 1110, 1281
DpnI GATC 5 cut(s) 126, 275, 557, 989, 1145
DpnII GATC 5 cut(s) 124, 273, 555, 987, 1143
DraI TTTAAA 1 cut(s) 157
Eam1104I CTCTTC 3 cut(s) 717, 719, 797
EarI CTCTTC 3 cut(s) 717, 719, 797
EciI GGCGGA 1 cut(s) 697
Eco130I CCWWGG 1 cut(s) 1226
Eco147I AGGCCT 1 cut(s) 446
Eco31I GGTCTC 2 cut(s) 902, 1004
Eco47I GGWCC 1 cut(s) 704
Eco57I CTGAAG 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 327
EcoRI GAATTC 2 cut(s) 564, 958
EcoRII CCWGG 3 cut(s) 323, 668, 1013
EcoT14I CCWWGG 1 cut(s) 1226
ErhI CCWWGG 1 cut(s) 1226
FaeI CATG 3 cut(s) 292, 794, 1097
FalI AAGNNNNNCTT 4 cut(s) 164, 196, 1052, 1084
FatI CATG 3 cut(s) 288, 790, 1093
FauNDI CATATG 1 cut(s) 1365
FbaI TGATCA 1 cut(s) 1143
FblI GTMKAC 1 cut(s) 1134
Fnu4HI GCNGC 3 cut(s) 435, 857, 1091
FokI GGATG 3 cut(s) 979, 1076, 1151
Fsp4HI GCNGC 3 cut(s) 435, 857, 1091
FspBI CTAG 1 cut(s) 885
GluI GCNGC 3 cut(s) 435, 857, 1091
GsaI CCCAGC 2 cut(s) 479, 1155
HaeIII GGCC 2 cut(s) 328, 446
HapII CCGG 3 cut(s) 963, 1039, 1187
Hin1II CATG 3 cut(s) 292, 794, 1097
HincII GTYRAC 2 cut(s) 453, 1287
HindII GTYRAC 2 cut(s) 453, 1287
HindIII AAGCTT 2 cut(s) 117, 1031
HinfI GANTC 5 cut(s) 380, 482, 547, 635, 673
HpaII CCGG 3 cut(s) 963, 1039, 1187
HphI GGTGA 3 cut(s) 250, 404, 1039
Hpy166II GTNNAC 4 cut(s) 7, 453, 1135, 1287
Hpy188I TCNGA 9 cut(s) 305, 379, 487, 634, 640, 664, 1057, 1111, 1309
Hpy188III TCNNGA 6 cut(s) 536, 581, 607, 617, 1039, 1187
Hpy8I GTNNAC 4 cut(s) 7, 453, 1135, 1287
HpyAV CCTTC 1 cut(s) 1018
HpyCH4III ACNGT 2 cut(s) 143, 153
HpyCH4V TGCA 8 cut(s) 7, 219, 248, 741, 898, 1215, 1299, 1346
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 4 cut(s) 302, 376, 1110, 1281
Hsp92II CATG 3 cut(s) 292, 794, 1097
Kpn2I TCCGGA 2 cut(s) 1038, 1186
Ksp22I TGATCA 1 cut(s) 1143
Kzo9I GATC 5 cut(s) 124, 273, 555, 987, 1143
LguI GCTCTTC 2 cut(s) 717, 719
Lsp1109I GCAGC 1 cut(s) 868
MaeI CTAG 1 cut(s) 885
MaeIII GTNAC 1 cut(s) 779
MalI GATC 5 cut(s) 126, 275, 557, 989, 1145
MboI GATC 5 cut(s) 124, 273, 555, 987, 1143
MboII GAAGA 5 cut(s) 311, 704, 736, 814, 1328
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 7 cut(s) 20, 75, 405, 564, 920, 958, 1261
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 3 cut(s) 465, 663, 811
MroI TCCGGA 2 cut(s) 1038, 1186
MroXI GAANNNNTTC 1 cut(s) 1034
MslI CAYNNNNRTG 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 1121
MspI CCGG 3 cut(s) 963, 1039, 1187
MspR9I CCNGG 4 cut(s) 325, 670, 964, 1015
Mva1269I GAATGC 2 cut(s) 729, 1382
MvaI CCWGG 3 cut(s) 325, 670, 1015
MwoI GCNNNNNNNGC 1 cut(s) 443
NciI CCSGG 1 cut(s) 964
NdeI CATATG 1 cut(s) 1365
NdeII GATC 5 cut(s) 124, 273, 555, 987, 1143
NlaIII CATG 3 cut(s) 292, 794, 1097
NlaIV GGNNCC 2 cut(s) 557, 850
NmeAIII GCCGAG 1 cut(s) 673
NspI RCATGY 1 cut(s) 1097
PacI TTAATTAA 1 cut(s) 408
PaeR7I CTCGAG 1 cut(s) 536
PceI AGGCCT 1 cut(s) 446
PciSI GCTCTTC 2 cut(s) 717, 719
PctI GAATGC 2 cut(s) 729, 1382
PdmI GAANNNNTTC 1 cut(s) 1034
PfeI GAWTC 4 cut(s) 380, 547, 635, 673
PfoI TCCNGGA 1 cut(s) 962
PkrI GCNGC 3 cut(s) 436, 858, 1092
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
PshBI ATTAAT 1 cut(s) 408
Psp6I CCWGG 3 cut(s) 323, 668, 1013
PspFI CCCAGC 2 cut(s) 475, 1151
PspGI CCWGG 3 cut(s) 323, 668, 1013
PspN4I GGNNCC 2 cut(s) 557, 850
PspPI GGNCC 2 cut(s) 327, 704
PstNI CAGNNNCTG 1 cut(s) 330
PsuI RGATCY 1 cut(s) 555
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 1 cut(s) 1304
RsaNI GTAC 1 cut(s) 1303
RseI CAYNNNNRTG 1 cut(s) 12
SapI GCTCTTC 2 cut(s) 717, 719
SatI GCNGC 3 cut(s) 435, 857, 1091
Sau3AI GATC 5 cut(s) 124, 273, 555, 987, 1143
Sau96I GGNCC 2 cut(s) 327, 704
ScaI AGTACT 1 cut(s) 1304
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 4 cut(s) 325, 670, 964, 1015
SduI GDGCHC 1 cut(s) 9
Sfr274I CTCGAG 1 cut(s) 536
SinI GGWCC 1 cut(s) 704
SlaI CTCGAG 1 cut(s) 536
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 3 cut(s) 506, 536, 1121
SmoI CTYRAG 3 cut(s) 506, 536, 1121
Sse9I AATT 7 cut(s) 20, 75, 405, 564, 920, 958, 1261
SseBI AGGCCT 1 cut(s) 446
SsiI CCGC 3 cut(s) 435, 682, 1091
SspMI CTAG 1 cut(s) 885
StuI AGGCCT 1 cut(s) 446
StyD4I CCNGG 4 cut(s) 323, 668, 962, 1013
StyI CCWWGG 1 cut(s) 1226
TaaI ACNGT 2 cut(s) 143, 153
TaqI TCGA 4 cut(s) 123, 537, 582, 877
TaqII GACCGA 1 cut(s) 692
TasI AATT 7 cut(s) 20, 75, 405, 564, 920, 958, 1261
TatI WGTACW 1 cut(s) 1302
TauI GCSGC 2 cut(s) 437, 1093
TfiI GAWTC 4 cut(s) 380, 547, 635, 673
TscAI CASTG 1 cut(s) 1153
TseI GCWGC 1 cut(s) 856
TspDTI ATGAA 6 cut(s) 76, 489, 961, 1037, 1287, 1365
TspRI CASTG 1 cut(s) 1153
Vha464I CTTAAG 1 cut(s) 1121
VneI GTGCAC 1 cut(s) 5
VpaK11BI GGWCC 1 cut(s) 704
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 4 cut(s) 20, 564, 920, 958
XceI RCATGY 1 cut(s) 1097
XhoI CTCGAG 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 1134
XmnI GAANNNNTTC 1 cut(s) 1034
XspI CTAG 1 cut(s) 885
ZrmI AGTACT 1 cut(s) 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.