RchiOBHm_Chr7g0239481
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013685
Physical Location & Seq
Forward (+)
64993288 .. 64994924
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21462

Sequence Viewer

Length: 1101 bp
ATGGTCATGGCACTCTCTCTCAGAACCTCGTCGCTTCTTCCCAGGCCCTGTTTTCACAGCTCACTCTCCCTCTTGTTTTACTCGTCCAAAACCTCAGAATCAAATCCAACAGCTGAATACTTAATTAACCACCACCAGTTTTCCCCTGAAGCGGCTTTTAAGGCCTCGTCAACTATCGCTTATCTCAGAAACCCAGCAGAGTCGGATTTGGTGCTTTCATTTCTCAAGGAGAGTGGTTTCTCCAAAACCCATCTCGAGGGAGTGATTCAAAGGATCCCCAGAATTCTATGTGCCAATCTCGACACTTCCATCAAACCGAAAATCAAGATTTTTCAAGATTTGGGCTTTTCGGATTCCGACATTGCCGAGATTATATCCTCTGACCCCTGGATTCTGTGGCGGAGTGCCGATAATCGGCTCGGTCCTGCTCTTCTCGTGTTGAAGAGCATTCTGGGTTGCAATGCCGATGTGTGTAAGCTGTTAAAGTTATGTGGGCGTTACCTCCAACATGATTTGGAGAAGAGTTTGAGGGCTAATATGGAGTTGTTAAAGAGTTTGGGTATAGGTTCCACGCAGCTTGTTAAGTATTTGTTTCGATTTCCTAGATTGTATTTGCGTAAGCAGGAGAACATTTTGGAATTTGTTGAAAGGGTTGATAAAATGGGGTTTGATAGGAATTCCGGGATGTTCATATCAGCTATTGGGATCATTAGTTCTATGAGGGTGGAGACCTGGGAAATGAAGGTGAAGCTTTTCCGGAGTTTGGGGATTTCGGAAAAGGATGTCTTTGCTATGTTTAGGCGGTCGCCGCATGTGTTTGGTATATCTGAGAGGAAACTTAAGGAGGTAGTAGACCTGTTGGTCAGTGCTGGGAAGTTTGACATCCCGTTTGTGATTAATAATCCGGAGTTGCTTATGTATAGTGTTGAACGCAGGCTGAAACCAAGGCTAAAAGTTTTGGAGATTTTGGAAAAGAACAATTTACTTGATGAAAAACCTAAGTTGACCACATTCTGCAAGTACTCCGAGCAGAAGTTTGCTGAAAGATATATTCTTCCTTATGCAAATGAACTTGGGAAACATATGAGTTATGAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

366

Amino Acids

41.94

Weight (kDa)

9.21

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 72 - 226 2.6e-19 mTERF
mTERF PF02536 144 - 347 2.2e-22 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37740 FvH4_5g37740 FvH4_5g37740
malus_domestica MD08G1180700.v1.1 MD15G1366400.v1.1
prunus_persica Prupe.1G514300_v2.0.a1 Prupe.7G221900_v2.0.a1
pyrus_communis pycom08g15450
rosa_chinensis RchiOBHm_Chr7g0239481
rosa_laevigata RLG00000000754
rosa_multiflora Rmu_sc0003379.1_g000006
rosa_roxburghii Rroxscaffold_3G00220900
rosa_rugosa Rorug07G0328200
rosa_samantha Rh7AG481700 Rh7BG454600 Rh7CG499700 Rh7DG467800
rosa_wichuraiana Rw7G040360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 860
AccI GTMKAC 1 cut(s) 852
AccIII TCCGGA 2 cut(s) 756, 904
AciI CCGC 4 cut(s) 152, 400, 802, 809
AclWI GGATC 3 cut(s) 268, 281, 713
AcsI RAATTY 3 cut(s) 282, 638, 676
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 1 cut(s) 1022
AfiI CCNNNNNNNGG 4 cut(s) 151, 256, 414, 763
AflII CTTAAG 1 cut(s) 839
AgsI TTSAA 5 cut(s) 269, 335, 442, 647, 929
AjnI CCWGG 3 cut(s) 41, 386, 731
AloI GAACNNNNNNTCC 2 cut(s) 697, 729
AluBI AGCT 6 cut(s) 60, 113, 478, 577, 698, 751
AluI AGCT 6 cut(s) 60, 113, 478, 577, 698, 751
Alw26I GTCTC 1 cut(s) 722
AlwI GGATC 3 cut(s) 268, 281, 713
AlwNI CAGNNNCTG 1 cut(s) 48
Ama87I CYCGRG 1 cut(s) 254
Aor13HI TCCGGA 2 cut(s) 756, 904
AoxI GGCC 2 cut(s) 44, 162
ApeKI GCWGC 1 cut(s) 574
ApoI RAATTY 3 cut(s) 282, 638, 676
ArsI GACNNNNNNTTYG 2 cut(s) 872, 904
AseI ATTAAT 1 cut(s) 897
Asp700I GAANNNNTTC 1 cut(s) 752
AspS9I GGNCC 2 cut(s) 45, 422
AsuC2I CCSGG 1 cut(s) 682
AsuHPI GGTGA 1 cut(s) 757
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 1 cut(s) 422
BamHI GGATCC 1 cut(s) 273
BauI CACGAG 1 cut(s) 434
BbvI GCAGC 1 cut(s) 586
BccI CCATC 2 cut(s) 258, 317
BciT130I CCWGG 3 cut(s) 43, 388, 733
BcnI CCSGG 1 cut(s) 682
BcoDI GTCTC 1 cut(s) 722
BfaI CTAG 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 839
BisI GCNGC 3 cut(s) 153, 575, 809
BlsI GCNGC 3 cut(s) 154, 576, 810
BmcAI AGTACT 1 cut(s) 1022
Bme1390I CCNGG 4 cut(s) 43, 388, 682, 733
Bme18I GGWCC 1 cut(s) 422
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 45, 422
BmiI GGNNCC 2 cut(s) 275, 568
BmrFI CCNGG 4 cut(s) 43, 388, 682, 733
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 682
BsaI GGTCTC 1 cut(s) 722
BsaJI CCNNGG 4 cut(s) 41, 386, 732, 944
BsaWI WCCGGW 2 cut(s) 756, 904
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 256, 414, 763
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 2 cut(s) 360, 466
BseAI TCCGGA 2 cut(s) 756, 904
BseBI CCWGG 3 cut(s) 43, 388, 733
BseDI CCNNGG 4 cut(s) 41, 386, 732, 944
BseGI GGATG 3 cut(s) 690, 787, 882
BseLI CCNNNNNNNGG 4 cut(s) 151, 256, 414, 763
BseMI GCAATG 2 cut(s) 360, 466
BseMII CTCAG 4 cut(s) 34, 108, 199, 819
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 586
BseYI CCCAGC 2 cut(s) 193, 869
Bsh1285I CGRYCG 1 cut(s) 806
BshFI GGCC 2 cut(s) 46, 164
BsiEI CGRYCG 1 cut(s) 806
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 3 cut(s) 681, 757, 905
BslI CCNNNNNNNGG 4 cut(s) 151, 256, 414, 763
BsmAI GTCTC 1 cut(s) 722
BsmI GAATGC 2 cut(s) 447, 1100
BsnI GGCC 2 cut(s) 46, 164
Bso31I GGTCTC 1 cut(s) 722
BsoBI CYCGRG 1 cut(s) 254
Bsp13I TCCGGA 2 cut(s) 756, 904
Bsp143I GATC 2 cut(s) 273, 705
BspACI CCGC 4 cut(s) 152, 400, 802, 809
BspANI GGCC 2 cut(s) 46, 164
BspCNI CTCAG 4 cut(s) 33, 107, 198, 820
BspEI TCCGGA 2 cut(s) 756, 904
BspLI GGNNCC 2 cut(s) 275, 568
BspPI GGATC 3 cut(s) 268, 281, 713
BspQI GCTCTTC 2 cut(s) 435, 437
BspTI CTTAAG 1 cut(s) 839
BspTNI GGTCTC 1 cut(s) 722
BsrDI GCAATG 2 cut(s) 360, 466
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 4 cut(s) 41, 386, 732, 944
BssMI GATC 2 cut(s) 273, 705
BssSI CACGAG 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 944
Bst2BI CACGAG 1 cut(s) 434
Bst2UI CCWGG 3 cut(s) 43, 388, 733
Bst6I CTCTTC 3 cut(s) 435, 437, 515
BstAFI CTTAAG 1 cut(s) 839
BstC8I GCNNGC 1 cut(s) 935
BstDEI CTNAG 5 cut(s) 20, 94, 185, 828, 999
BstF5I GGATG 3 cut(s) 690, 787, 882
BstKTI GATC 2 cut(s) 276, 708
BstMAI GTCTC 1 cut(s) 722
BstMBI GATC 2 cut(s) 273, 705
BstMCI CGRYCG 1 cut(s) 806
BstMWI GCNNNNNNNGC 2 cut(s) 161, 808
BstNI CCWGG 3 cut(s) 43, 388, 733
BstNSI RCATGY 1 cut(s) 815
BstSCI CCNGG 4 cut(s) 41, 386, 680, 731
BstV1I GCAGC 1 cut(s) 586
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 2 cut(s) 46, 164
BtsCI GGATG 3 cut(s) 690, 787, 882
BtsIMutI CAGTG 1 cut(s) 871
Cac8I GCNNGC 1 cut(s) 935
CaiI CAGNNNCTG 1 cut(s) 48
Cfr13I GGNCC 2 cut(s) 45, 422
Csp6I GTAC 1 cut(s) 1021
CspCI CAANNNNNGTGG 4 cut(s) 214, 249, 559, 594
CviAII CATG 3 cut(s) 7, 509, 812
CviQI GTAC 1 cut(s) 1021
DdeI CTNAG 5 cut(s) 20, 94, 185, 828, 999
DpnI GATC 2 cut(s) 275, 707
DpnII GATC 2 cut(s) 273, 705
DrdI GACNNNNNNGTC 1 cut(s) 860
DseDI GACNNNNNNGTC 1 cut(s) 860
Eam1104I CTCTTC 3 cut(s) 435, 437, 515
EarI CTCTTC 3 cut(s) 435, 437, 515
EciI GGCGGA 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 944
Eco147I AGGCCT 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 722
Eco47I GGWCC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 45
EcoRI GAATTC 2 cut(s) 282, 676
EcoRII CCWGG 3 cut(s) 41, 386, 731
EcoT14I CCWWGG 1 cut(s) 944
ErhI CCWWGG 1 cut(s) 944
FaeI CATG 3 cut(s) 10, 512, 815
FalI AAGNNNNNCTT 2 cut(s) 770, 802
FatI CATG 3 cut(s) 6, 508, 811
FauNDI CATATG 1 cut(s) 1083
FblI GTMKAC 1 cut(s) 852
Fnu4HI GCNGC 3 cut(s) 153, 575, 809
FokI GGATG 3 cut(s) 697, 794, 869
Fsp4HI GCNGC 3 cut(s) 153, 575, 809
FspBI CTAG 1 cut(s) 603
GluI GCNGC 3 cut(s) 153, 575, 809
GsaI CCCAGC 2 cut(s) 197, 873
HaeIII GGCC 2 cut(s) 46, 164
HapII CCGG 3 cut(s) 681, 757, 905
Hin1II CATG 3 cut(s) 10, 512, 815
HincII GTYRAC 2 cut(s) 171, 1005
HindII GTYRAC 2 cut(s) 171, 1005
HindIII AAGCTT 1 cut(s) 749
HinfI GANTC 5 cut(s) 98, 200, 265, 353, 391
HpaII CCGG 3 cut(s) 681, 757, 905
HphI GGTGA 1 cut(s) 757
Hpy166II GTNNAC 3 cut(s) 171, 853, 1005
Hpy188III TCNNGA 6 cut(s) 254, 299, 325, 335, 757, 905
Hpy8I GTNNAC 3 cut(s) 171, 853, 1005
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 736
HpyCH4V TGCA 3 cut(s) 459, 1017, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 808
HpyF3I CTNAG 5 cut(s) 20, 94, 185, 828, 999
Hsp92II CATG 3 cut(s) 10, 512, 815
Kpn2I TCCGGA 2 cut(s) 756, 904
Kzo9I GATC 2 cut(s) 273, 705
LguI GCTCTTC 2 cut(s) 435, 437
Lsp1109I GCAGC 1 cut(s) 586
MaeI CTAG 1 cut(s) 603
MaeIII GTNAC 1 cut(s) 497
MalI GATC 2 cut(s) 275, 707
MboI GATC 2 cut(s) 273, 705
MboII GAAGA 5 cut(s) 29, 422, 454, 532, 1046
MflI RGATCY 1 cut(s) 273
MluCI AATT 5 cut(s) 123, 282, 638, 676, 979
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 4 cut(s) 131, 183, 381, 529
MroI TCCGGA 2 cut(s) 756, 904
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 8 cut(s) 122, 126, 159, 482, 548, 582, 840, 897
MspA1I CMGCKG 1 cut(s) 113
MspCI CTTAAG 1 cut(s) 839
MspI CCGG 3 cut(s) 681, 757, 905
MspR9I CCNGG 4 cut(s) 43, 388, 682, 733
Mva1269I GAATGC 2 cut(s) 447, 1100
MvaI CCWGG 3 cut(s) 43, 388, 733
MwoI GCNNNNNNNGC 2 cut(s) 161, 808
NciI CCSGG 1 cut(s) 682
NdeI CATATG 1 cut(s) 1083
NdeII GATC 2 cut(s) 273, 705
NlaIII CATG 3 cut(s) 10, 512, 815
NlaIV GGNNCC 2 cut(s) 275, 568
NmeAIII GCCGAG 1 cut(s) 391
NspI RCATGY 1 cut(s) 815
PacI TTAATTAA 1 cut(s) 126
PaeR7I CTCGAG 1 cut(s) 254
PceI AGGCCT 1 cut(s) 164
PciSI GCTCTTC 2 cut(s) 435, 437
PctI GAATGC 2 cut(s) 447, 1100
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 4 cut(s) 98, 265, 353, 391
PfoI TCCNGGA 1 cut(s) 680
PkrI GCNGC 3 cut(s) 154, 576, 810
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PshBI ATTAAT 1 cut(s) 897
Psp6I CCWGG 3 cut(s) 41, 386, 731
PspFI CCCAGC 2 cut(s) 193, 869
PspGI CCWGG 3 cut(s) 41, 386, 731
PspN4I GGNNCC 2 cut(s) 275, 568
PspPI GGNCC 2 cut(s) 45, 422
PstNI CAGNNNCTG 1 cut(s) 48
PsuI RGATCY 1 cut(s) 273
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 1022
RsaNI GTAC 1 cut(s) 1021
SapI GCTCTTC 2 cut(s) 435, 437
SaqAI TTAA 8 cut(s) 122, 126, 159, 482, 548, 582, 840, 897
SatI GCNGC 3 cut(s) 153, 575, 809
Sau3AI GATC 2 cut(s) 273, 705
Sau96I GGNCC 2 cut(s) 45, 422
ScaI AGTACT 1 cut(s) 1022
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 4 cut(s) 43, 388, 682, 733
Sfr274I CTCGAG 1 cut(s) 254
SinI GGWCC 1 cut(s) 422
SlaI CTCGAG 1 cut(s) 254
SmlI CTYRAG 3 cut(s) 224, 254, 839
SmoI CTYRAG 3 cut(s) 224, 254, 839
Sse9I AATT 5 cut(s) 123, 282, 638, 676, 979
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 4 cut(s) 152, 400, 802, 809
SspMI CTAG 1 cut(s) 603
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 4 cut(s) 41, 386, 680, 731
StyI CCWWGG 1 cut(s) 944
TaqI TCGA 3 cut(s) 255, 300, 595
TaqII GACCGA 1 cut(s) 410
TasI AATT 5 cut(s) 123, 282, 638, 676, 979
TatI WGTACW 1 cut(s) 1020
TauI GCSGC 2 cut(s) 155, 811
TfiI GAWTC 4 cut(s) 98, 265, 353, 391
Tru1I TTAA 8 cut(s) 122, 126, 159, 482, 548, 582, 840, 897
Tru9I TTAA 8 cut(s) 122, 126, 159, 482, 548, 582, 840, 897
TscAI CASTG 1 cut(s) 871
TseI GCWGC 1 cut(s) 574
TspDTI ATGAA 5 cut(s) 207, 679, 755, 1005, 1083
TspRI CASTG 1 cut(s) 871
Vha464I CTTAAG 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 422
VspI ATTAAT 1 cut(s) 897
XapI RAATTY 3 cut(s) 282, 638, 676
XceI RCATGY 1 cut(s) 815
XhoI CTCGAG 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 852
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 1 cut(s) 603
ZrmI AGTACT 1 cut(s) 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.