Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013685

Physical Location & Seq

Genomic Coordinates Forward (+)

22382799 .. 22389515

Gene Structure 6717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1180700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGATAACCCTGATTAACAAAAAGCTAATCTCACTCTCACTAACCTCTGACGGGCTTCACAAATCCCCTCTCTGCAACTCAATCTCACTCTTTTTCTACTCTTCGTCCCGACCCAAAAAGCGGATATCAAAACCCAAAATTGCAGTAGCTGAATACTTAATCAGCCAGCACCAGTTTTCCCCAGAAGCCGCTCTGAAAGCCGCATCAACAGTCGCTTATCTGAAAAGCCCTGCTGAATCCAGTTCGGTGATTTCGTTTCTCAGGGAAAGCGGCTTCTCGAAAACCCATCTGGAAGATGTGGTTAAAAGGGTCCCCAGGATTCTTATTGCCAATCCTGACATTGTCCTCAAACCCAAATTCAAGGTTTTCCAGGACTCGGGCTTTTCGGATTCCGACATTGTTGATATTGTGTCCTCTGACCCCTGGATTCTGTTGCGAAGTGCCGATAATCAGCTTGGCCCTGCTCTGTTGGTGCTGAAGAACATTCTCGGATCGAATGCTAGTGTGCTCAAGGTTTTAAAGTTGTCTGGGGGAGTTCTTAAATATGACTTGGAGAAGACATTGATGTCCAATGTTGAGGTCTTACAGAGTTATGGTATAAAATCGTCACAAATTATCAAATACATATTTCATTTTCCGAGATTTTTTGTGCATAAGCCGGAGAGCATTGTGGATGTTATTAAAAGGGTTGACGAAATGGGTTTCGATATGAAGTCCAAGAGGTTCCTATCAGCAATTCGGATCATGACTTCGCTCACTGTGGAGACATGGGAACGGAAGGTGAAGCTTTTCAAGAGTTTGGGCCTTTCAGAAGATGATATCTCGGCAGTGTTTAGGAGGGTACCCCAGGTGTTTGGAGTATCTGAGAAGAAGATTGAGGAGGTTACAGAGGTGCTTCTCAGCACTGGCAAGTATGATATCTCATTTATAGTTAATCACCCAGAATTGCTTATTTATAGCGTCGAGCACAGGCTGAAACCACGACTACAAGTTATGGAGATCCTCGAAAAGAAAAAACTACTTGGGAAAACACCTAATTTGACCACAATCTGCAAGTACTCTGAACAAAAGTTTGCTGAATTATATGTTGTTCCTTTTACAAATGAACTTGAAGGAAGAGTGCATGGAGTGGAAATCAATATCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

383

Amino Acids

43.08

Weight (kDa)

9.45

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	84 - 150	1.3e-10	mTERF
mTERF	PF02536	149 - 359	4.6e-24	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37740 FvH4_5g37740 FvH4_5g37740
malus_domestica	MD08G1180700.v1.1 MD15G1366400.v1.1
prunus_persica	Prupe.1G514300_v2.0.a1 Prupe.7G221900_v2.0.a1
pyrus_communis	pycom08g15450
rosa_chinensis	RchiOBHm_Chr7g0239481
rosa_laevigata	RLG00000000754
rosa_multiflora	Rmu_sc0003379.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220900
rosa_rugosa	Rorug07G0328200
rosa_samantha	Rh7AG481700 Rh7BG454600 Rh7CG499700 Rh7DG467800
rosa_wichuraiana	Rw7G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	565
Acc65I	GGTACC	1 cut(s)	841
AccB1I	GGYRCC	1 cut(s)	841
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	4 cut(s)	121, 189, 201, 270
AclWI	GGATC	3 cut(s)	499, 749, 994
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	497
AfaI	GTAC	2 cut(s)	843, 1058
AfiI	CCNNNNNNNGG	3 cut(s)	51, 120, 376
AgsI	TTSAA	3 cut(s)	361, 793, 1112
AjnI	CCWGG	4 cut(s)	314, 369, 422, 846
AluBI	AGCT	4 cut(s)	25, 149, 454, 787
AluI	AGCT	4 cut(s)	25, 149, 454, 787
Alw21I	GWGCWC	2 cut(s)	510, 969
Alw26I	GTCTC	1 cut(s)	758
AlwI	GGATC	3 cut(s)	499, 749, 994
AlwNI	CAGNNNCTG	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	376
AoxI	GGCC	2 cut(s)	457, 802
ApoI	RAATTY	1 cut(s)	356
Asp700I	GAANNNNTTC	1 cut(s)	788
Asp718I	GGTACC	1 cut(s)	841
AspS9I	GGNCC	3 cut(s)	310, 458, 802
AsuHPI	GGTGA	3 cut(s)	259, 793, 929
AvaI	CYCGRG	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	841
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	2 cut(s)	510, 969
BccI	CCATC	1 cut(s)	294
BciT130I	CCWGG	4 cut(s)	316, 371, 424, 848
BcoDI	GTCTC	1 cut(s)	758
BfaI	CTAG	1 cut(s)	501
BisI	GCNGC	3 cut(s)	189, 201, 271
BlsI	GCNGC	3 cut(s)	190, 202, 272
BmcAI	AGTACT	1 cut(s)	1058
Bme1390I	CCNGG	4 cut(s)	316, 371, 424, 848
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	376
BmgT120I	GGNCC	3 cut(s)	310, 458, 802
BmiI	GGNNCC	4 cut(s)	311, 312, 725, 843
BmrFI	CCNGG	4 cut(s)	316, 371, 424, 848
BmsI	GCATC	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	494
BsaJI	CCNNGG	3 cut(s)	314, 422, 846
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 120, 376
Bse1I	ACTGG	3 cut(s)	172, 240, 910
BseBI	CCWGG	4 cut(s)	316, 371, 424, 848
BseDI	CCNNGG	3 cut(s)	314, 422, 846
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	3 cut(s)	51, 120, 376
BseMII	CTCAG	3 cut(s)	274, 855, 913
BseNI	ACTGG	3 cut(s)	172, 240, 910
BseRI	GAGGAG	1 cut(s)	893
BshFI	GGCC	2 cut(s)	459, 804
BshNI	GGYRCC	1 cut(s)	841
BsiHKAI	GWGCWC	2 cut(s)	510, 969
BsiHKCI	CYCGRG	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	659
BslFI	GGGAC	2 cut(s)	91, 296
BslI	CCNNNNNNNGG	3 cut(s)	51, 120, 376
BsmAI	GTCTC	1 cut(s)	758
BsmFI	GGGAC	2 cut(s)	91, 296
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	2 cut(s)	459, 804
BsoBI	CYCGRG	1 cut(s)	376
Bsp1286I	GDGCHC	2 cut(s)	510, 969
Bsp143I	GATC	3 cut(s)	491, 741, 999
BspACI	CCGC	4 cut(s)	121, 189, 201, 270
BspANI	GGCC	2 cut(s)	459, 804
BspCNI	CTCAG	3 cut(s)	273, 856, 912
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	4 cut(s)	311, 312, 725, 843
BspPI	GGATC	3 cut(s)	499, 749, 994
BspT107I	GGYRCC	1 cut(s)	841
BsrBI	CCGCTC	1 cut(s)	191
BsrI	ACTGG	3 cut(s)	172, 240, 910
BssECI	CCNNGG	3 cut(s)	314, 422, 846
BssMI	GATC	3 cut(s)	491, 741, 999
Bst2UI	CCWGG	4 cut(s)	316, 371, 424, 848
Bst4CI	ACNGT	2 cut(s)	211, 760
Bst6I	CTCTTC	2 cut(s)	106, 1111
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	3 cut(s)	260, 864, 899
BstF5I	GGATG	1 cut(s)	679
BstKTI	GATC	3 cut(s)	494, 744, 1002
BstMAI	GTCTC	1 cut(s)	758
BstMBI	GATC	3 cut(s)	491, 741, 999
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	4 cut(s)	316, 371, 424, 848
BstSCI	CCNGG	4 cut(s)	314, 369, 422, 846
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	999
BstXI	CCANNNNNNTGG	1 cut(s)	854
BstYI	RGATCY	1 cut(s)	999
BsuRI	GGCC	2 cut(s)	459, 804
BtsCI	GGATG	1 cut(s)	679
BtsI	GCAGTG	1 cut(s)	834
BtsIMutI	CAGTG	3 cut(s)	756, 834, 903
Cac8I	GCNNGC	1 cut(s)	167
CaiI	CAGNNNCTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	744
Cfr13I	GGNCC	3 cut(s)	310, 458, 802
CseI	GACGC	1 cut(s)	949
Csp6I	GTAC	2 cut(s)	842, 1057
CviAII	CATG	3 cut(s)	745, 768, 1124
CviQI	GTAC	2 cut(s)	842, 1057
DdeI	CTNAG	3 cut(s)	260, 864, 899
DpnI	GATC	3 cut(s)	493, 743, 1001
DpnII	GATC	3 cut(s)	491, 741, 999
DraI	TTTAAA	1 cut(s)	519
DrdI	GACNNNNNNGTC	1 cut(s)	565
DseDI	GACNNNNNNGTC	1 cut(s)	565
Eam1104I	CTCTTC	2 cut(s)	106, 1111
EarI	CTCTTC	2 cut(s)	106, 1111
Eco32I	GATATC	3 cut(s)	126, 820, 919
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	4 cut(s)	314, 369, 422, 846
EcoRV	GATATC	3 cut(s)	126, 820, 919
FaeI	CATG	3 cut(s)	748, 771, 1127
FaqI	GGGAC	2 cut(s)	91, 296
FatI	CATG	3 cut(s)	744, 767, 1123
Fnu4HI	GCNGC	3 cut(s)	189, 201, 271
FokI	GGATG	1 cut(s)	686
Fsp4HI	GCNGC	3 cut(s)	189, 201, 271
FspBI	CTAG	1 cut(s)	501
GluI	GCNGC	3 cut(s)	189, 201, 271
HaeIII	GGCC	2 cut(s)	459, 804
HapII	CCGG	1 cut(s)	659
HgaI	GACGC	1 cut(s)	949
Hin1II	CATG	3 cut(s)	748, 771, 1127
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	5 cut(s)	236, 319, 374, 389, 427
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	3 cut(s)	259, 793, 929
Hpy166II	GTNNAC	1 cut(s)	691
Hpy188III	TCNNGA	7 cut(s)	108, 277, 290, 335, 745, 793, 1146
Hpy8I	GTNNAC	1 cut(s)	691
Hpy99I	CGWCG	1 cut(s)	965
HpyAV	CCTTC	2 cut(s)	772, 1106
HpyCH4III	ACNGT	2 cut(s)	211, 760
HpyCH4V	TGCA	5 cut(s)	75, 143, 652, 1053, 1123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	3 cut(s)	260, 864, 899
Hsp92II	CATG	3 cut(s)	748, 771, 1127
KflI	GGGWCCC	1 cut(s)	310
KpnI	GGTACC	1 cut(s)	845
Kzo9I	GATC	3 cut(s)	491, 741, 999
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	606, 883
MalI	GATC	3 cut(s)	493, 743, 1001
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	3 cut(s)	491, 741, 999
MboII	GAAGA	8 cut(s)	93, 305, 490, 568, 824, 880, 883, 1128
MflI	RGATCY	1 cut(s)	999
MhlI	GDGCHC	2 cut(s)	510, 969
MluCI	AATT	7 cut(s)	138, 356, 612, 735, 944, 1036, 1079
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	417
MroXI	GAANNNNTTC	1 cut(s)	788
MseI	TTAA	7 cut(s)	15, 158, 303, 518, 540, 681, 933
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	4 cut(s)	316, 371, 424, 848
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	4 cut(s)	316, 371, 424, 848
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	3 cut(s)	491, 741, 999
NlaIII	CATG	3 cut(s)	748, 771, 1127
NlaIV	GGNNCC	4 cut(s)	311, 312, 725, 843
NmeAIII	GCCGAG	1 cut(s)	803
NmuCI	GTSAC	1 cut(s)	606
PagI	TCATGA	1 cut(s)	744
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PctI	GAATGC	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	788
PfeI	GAWTC	4 cut(s)	236, 319, 389, 427
PflFI	GACNNNGTC	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	190, 202, 272
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PpuMI	RGGWCCY	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	4 cut(s)	314, 369, 422, 846
PspGI	CCWGG	4 cut(s)	314, 369, 422, 846
PspN4I	GGNNCC	4 cut(s)	311, 312, 725, 843
PspPI	GGNCC	3 cut(s)	310, 458, 802
PspPPI	RGGWCCY	1 cut(s)	310
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	999
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	2 cut(s)	843, 1058
RsaNI	GTAC	2 cut(s)	842, 1057
SaqAI	TTAA	7 cut(s)	15, 158, 303, 518, 540, 681, 933
SatI	GCNGC	3 cut(s)	189, 201, 271
Sau3AI	GATC	3 cut(s)	491, 741, 999
Sau96I	GGNCC	3 cut(s)	310, 458, 802
ScaI	AGTACT	1 cut(s)	1058
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	4 cut(s)	316, 371, 424, 848
SduI	GDGCHC	2 cut(s)	510, 969
SfaNI	GCATC	1 cut(s)	212
SinI	GGWCC	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	7 cut(s)	138, 356, 612, 735, 944, 1036, 1079
SsiI	CCGC	4 cut(s)	121, 189, 201, 270
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	4 cut(s)	314, 369, 422, 846
TaaI	ACNGT	2 cut(s)	211, 760
TaqI	TCGA	5 cut(s)	278, 494, 705, 963, 1005
TasI	AATT	7 cut(s)	138, 356, 612, 735, 944, 1036, 1079
TatI	WGTACW	1 cut(s)	1056
TauI	GCSGC	3 cut(s)	191, 203, 273
TfiI	GAWTC	4 cut(s)	236, 319, 389, 427
Tru1I	TTAA	7 cut(s)	15, 158, 303, 518, 540, 681, 933
Tru9I	TTAA	7 cut(s)	15, 158, 303, 518, 540, 681, 933
TscAI	CASTG	3 cut(s)	763, 834, 910
TseFI	GTSAC	1 cut(s)	606
Tsp45I	GTSAC	1 cut(s)	606
TspDTI	ATGAA	3 cut(s)	620, 725, 1119
TspGWI	ACGGA	1 cut(s)	790
TspRI	CASTG	3 cut(s)	763, 834, 910
Tth111I	GACNNNGTC	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	788
XspI	CTAG	1 cut(s)	501
ZrmI	AGTACT	1 cut(s)	1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.