Rh7DG467800
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013685
Physical Location & Seq
Forward (+)
66755525 .. 66756619
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG467800.1

Sequence Viewer

Length: 1095 bp
ATGGCACTCTCTCTCAGAACCTCGTCGCTTCTTCCCAGGCCCTGTTTTCACAGCTCACTCTCCCTCTTGTTTTACTCGTCCAAAACCTCAGAATCAAATCCAACAGCTGAATACTTAATTAACCACCATCAGTTTTCCCCTGAAGCCGCTTTTAAGGCCTCGTCAACTATCGCTTATCTCAGAAACCCAGCAGAGTCGGATTTGGTGCTTTCATTTCTCAAGGAGAGTGGTTTCTCCAAAACCCATCTCGAGGGAGTGATTCAAAGGATCCCCAGAATTCTATGTGCCAATCTCGACACTTCCATCAAACCCAAAATCAAGATTTTTCAAGATTTGGGCTTTTCGGATTCCGACATTGCCGAGATTATATCCTCTGACCCCTGGATTCTGTGGCGGAGTGCCGATAATCGGCTCGGTCCTGCTCTTCTGGTGTTGAAGAGCATTCTGGGTTGCAATGCCGATGTGTGTAAGCTGTTAAAGTTATGTGGGCGTTACCTCCAACATGATTTGGAGAAGAGTTTGAGGGCTAATATGGAGTTGTTAAAGAGTTTGGGTATAGGTTCCACGCAGCTTGTTAAGTATTTGTTTCGATTTCCTAGATTGTATTTGCATAAGCAGGAGACCATTTTGGAATTTGTTGAAAGGGTTGATAAAATGGGGTTTGATAGGAATTCCGGGATGTTCATATCAGCTATTGGGATCATTAGTTCTATGAGGGTGGAGACCTGGGAAATGAAGGTGAAGCTTTTCCGGAGTTTGGGGATTTCGGAAAAGGATGTCTTTGCTATGTTTAGGAGGTCGCCGCATGTGTTTGGTATATCTGAGAGGAAACTTAAGGAGGTAGTAGACCTGCTGGTCAGTGCTGGGAAGTTTGACATCCCGTTTGTGATTAATAATCCGGAGTTGCTTATGTATAGTGTTGAGCGCAGGCTGAAACCAAGGCTAAAAGTTTTGGAGATTTTGGAAAATAACAATTTACTTGATGAAAAACCTAAGTTGACCACATTCTGCAAGTACTCCGAGCAGAAGTTTGCTGAAAGATATATTCTTCCTTATGCAAATGAACTTGGGAAACATATGAGTTATGAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

364

Amino Acids

41.66

Weight (kDa)

9.08

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 70 - 224 2.1e-19 mTERF
mTERF PF02536 136 - 345 6.5e-23 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013685)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37740 FvH4_5g37740 FvH4_5g37740
malus_domestica MD08G1180700.v1.1 MD15G1366400.v1.1
prunus_persica Prupe.1G514300_v2.0.a1 Prupe.7G221900_v2.0.a1
pyrus_communis pycom08g15450
rosa_chinensis RchiOBHm_Chr7g0239481
rosa_laevigata RLG00000000754
rosa_multiflora Rmu_sc0003379.1_g000006
rosa_roxburghii Rroxscaffold_3G00220900
rosa_rugosa Rorug07G0328200
rosa_samantha Rh7AG481700 Rh7BG454600 Rh7CG499700 Rh7DG467800
rosa_wichuraiana Rw7G040360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 854
Acc36I ACCTGC 1 cut(s) 858
AccI GTMKAC 1 cut(s) 846
AccIII TCCGGA 2 cut(s) 750, 898
AciI CCGC 3 cut(s) 147, 394, 803
AclWI GGATC 3 cut(s) 262, 275, 707
AcsI RAATTY 3 cut(s) 276, 632, 670
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 1016
AfiI CCNNNNNNNGG 3 cut(s) 250, 408, 757
AflII CTTAAG 1 cut(s) 833
AgsI TTSAA 4 cut(s) 263, 329, 436, 641
AjnI CCWGG 3 cut(s) 35, 380, 725
AloI GAACNNNNNNTCC 2 cut(s) 691, 723
AluBI AGCT 6 cut(s) 54, 107, 472, 571, 692, 745
AluI AGCT 6 cut(s) 54, 107, 472, 571, 692, 745
Alw26I GTCTC 2 cut(s) 614, 716
AlwI GGATC 3 cut(s) 262, 275, 707
AlwNI CAGNNNCTG 1 cut(s) 42
Ama87I CYCGRG 1 cut(s) 248
Aor13HI TCCGGA 2 cut(s) 750, 898
AoxI GGCC 2 cut(s) 38, 156
ApeKI GCWGC 1 cut(s) 568
ApoI RAATTY 3 cut(s) 276, 632, 670
ArsI GACNNNNNNTTYG 2 cut(s) 866, 898
AseI ATTAAT 1 cut(s) 891
Asp700I GAANNNNTTC 1 cut(s) 746
AspLEI GCGC 1 cut(s) 927
AspS9I GGNCC 2 cut(s) 39, 416
AsuC2I CCSGG 1 cut(s) 676
AsuHPI GGTGA 1 cut(s) 751
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 1 cut(s) 416
BamHI GGATCC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 580
BccI CCATC 3 cut(s) 135, 252, 311
BciT130I CCWGG 3 cut(s) 37, 382, 727
BcnI CCSGG 1 cut(s) 676
BcoDI GTCTC 2 cut(s) 614, 716
BfaI CTAG 1 cut(s) 597
BfrI CTTAAG 1 cut(s) 833
BfuAI ACCTGC 1 cut(s) 858
BisI GCNGC 3 cut(s) 147, 569, 803
BlsI GCNGC 3 cut(s) 148, 570, 804
BmcAI AGTACT 1 cut(s) 1016
Bme1390I CCNGG 4 cut(s) 37, 382, 676, 727
Bme18I GGWCC 1 cut(s) 416
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 39, 416
BmiI GGNNCC 2 cut(s) 269, 562
BmrFI CCNGG 4 cut(s) 37, 382, 676, 727
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 676
BsaI GGTCTC 2 cut(s) 614, 716
BsaJI CCNNGG 4 cut(s) 35, 380, 726, 938
BsaWI WCCGGW 2 cut(s) 750, 898
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 408, 757
Bse3DI GCAATG 2 cut(s) 354, 460
BseAI TCCGGA 2 cut(s) 750, 898
BseBI CCWGG 3 cut(s) 37, 382, 727
BseDI CCNNGG 4 cut(s) 35, 380, 726, 938
BseGI GGATG 3 cut(s) 684, 781, 876
BseLI CCNNNNNNNGG 3 cut(s) 250, 408, 757
BseMI GCAATG 2 cut(s) 354, 460
BseMII CTCAG 4 cut(s) 28, 102, 193, 813
BseXI GCAGC 1 cut(s) 580
BseYI CCCAGC 2 cut(s) 187, 863
BshFI GGCC 2 cut(s) 40, 158
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 3 cut(s) 675, 751, 899
BslI CCNNNNNNNGG 3 cut(s) 250, 408, 757
BsmAI GTCTC 2 cut(s) 614, 716
BsmI GAATGC 2 cut(s) 441, 1094
BsnI GGCC 2 cut(s) 40, 158
Bso31I GGTCTC 2 cut(s) 614, 716
BsoBI CYCGRG 1 cut(s) 248
Bsp13I TCCGGA 2 cut(s) 750, 898
Bsp143I GATC 2 cut(s) 267, 699
BspACI CCGC 3 cut(s) 147, 394, 803
BspANI GGCC 2 cut(s) 40, 158
BspCNI CTCAG 4 cut(s) 27, 101, 192, 814
BspEI TCCGGA 2 cut(s) 750, 898
BspLI GGNNCC 2 cut(s) 269, 562
BspMI ACCTGC 1 cut(s) 858
BspPI GGATC 3 cut(s) 262, 275, 707
BspQI GCTCTTC 2 cut(s) 429, 431
BspTI CTTAAG 1 cut(s) 833
BspTNI GGTCTC 2 cut(s) 614, 716
BsrDI GCAATG 2 cut(s) 354, 460
BssECI CCNNGG 4 cut(s) 35, 380, 726, 938
BssMI GATC 2 cut(s) 267, 699
BssT1I CCWWGG 1 cut(s) 938
Bst2UI CCWGG 3 cut(s) 37, 382, 727
Bst6I CTCTTC 3 cut(s) 429, 431, 509
BstAFI CTTAAG 1 cut(s) 833
BstC8I GCNNGC 1 cut(s) 929
BstDEI CTNAG 5 cut(s) 14, 88, 179, 822, 993
BstF5I GGATG 3 cut(s) 684, 781, 876
BstHHI GCGC 1 cut(s) 927
BstKTI GATC 2 cut(s) 270, 702
BstMAI GTCTC 2 cut(s) 614, 716
BstMBI GATC 2 cut(s) 267, 699
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 3 cut(s) 37, 382, 727
BstNSI RCATGY 1 cut(s) 809
BstSCI CCNGG 4 cut(s) 35, 380, 674, 725
BstV1I GCAGC 1 cut(s) 580
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
BsuRI GGCC 2 cut(s) 40, 158
BtsCI GGATG 3 cut(s) 684, 781, 876
BtsIMutI CAGTG 1 cut(s) 865
BveI ACCTGC 1 cut(s) 858
Cac8I GCNNGC 1 cut(s) 929
CaiI CAGNNNCTG 1 cut(s) 42
CfoI GCGC 1 cut(s) 927
Cfr13I GGNCC 2 cut(s) 39, 416
Csp6I GTAC 1 cut(s) 1015
CspCI CAANNNNNGTGG 4 cut(s) 208, 243, 553, 588
CviAII CATG 2 cut(s) 503, 806
CviQI GTAC 1 cut(s) 1015
DdeI CTNAG 5 cut(s) 14, 88, 179, 822, 993
DpnI GATC 2 cut(s) 269, 701
DpnII GATC 2 cut(s) 267, 699
DrdI GACNNNNNNGTC 1 cut(s) 854
DseDI GACNNNNNNGTC 1 cut(s) 854
Eam1104I CTCTTC 3 cut(s) 429, 431, 509
EarI CTCTTC 3 cut(s) 429, 431, 509
EciI GGCGGA 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 938
Eco147I AGGCCT 1 cut(s) 158
Eco31I GGTCTC 2 cut(s) 614, 716
Eco47I GGWCC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 39
EcoRI GAATTC 2 cut(s) 276, 670
EcoRII CCWGG 3 cut(s) 35, 380, 725
EcoT14I CCWWGG 1 cut(s) 938
ErhI CCWWGG 1 cut(s) 938
FaeI CATG 2 cut(s) 506, 809
FalI AAGNNNNNCTT 2 cut(s) 764, 796
FatI CATG 2 cut(s) 502, 805
FauNDI CATATG 1 cut(s) 1077
FblI GTMKAC 1 cut(s) 846
Fnu4HI GCNGC 3 cut(s) 147, 569, 803
FokI GGATG 3 cut(s) 691, 788, 863
Fsp4HI GCNGC 3 cut(s) 147, 569, 803
FspBI CTAG 1 cut(s) 597
GlaI GCGC 1 cut(s) 926
GluI GCNGC 3 cut(s) 147, 569, 803
GsaI CCCAGC 2 cut(s) 191, 867
HaeIII GGCC 2 cut(s) 40, 158
HapII CCGG 3 cut(s) 675, 751, 899
HhaI GCGC 1 cut(s) 927
Hin1II CATG 2 cut(s) 506, 809
Hin6I GCGC 1 cut(s) 925
HinP1I GCGC 1 cut(s) 925
HincII GTYRAC 2 cut(s) 165, 999
HindII GTYRAC 2 cut(s) 165, 999
HindIII AAGCTT 1 cut(s) 743
HinfI GANTC 5 cut(s) 92, 194, 259, 347, 385
HpaII CCGG 3 cut(s) 675, 751, 899
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 3 cut(s) 165, 847, 999
Hpy188III TCNNGA 6 cut(s) 248, 293, 319, 329, 751, 899
Hpy8I GTNNAC 3 cut(s) 165, 847, 999
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 730
HpyCH4V TGCA 4 cut(s) 453, 610, 1011, 1058
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 5 cut(s) 14, 88, 179, 822, 993
Hsp92II CATG 2 cut(s) 506, 809
HspAI GCGC 1 cut(s) 925
Kpn2I TCCGGA 2 cut(s) 750, 898
Kzo9I GATC 2 cut(s) 267, 699
LguI GCTCTTC 2 cut(s) 429, 431
Lsp1109I GCAGC 1 cut(s) 580
MaeI CTAG 1 cut(s) 597
MaeIII GTNAC 1 cut(s) 491
MalI GATC 2 cut(s) 269, 701
MboI GATC 2 cut(s) 267, 699
MboII GAAGA 5 cut(s) 23, 416, 448, 526, 1040
MflI RGATCY 1 cut(s) 267
MluCI AATT 5 cut(s) 117, 276, 632, 670, 973
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 4 cut(s) 125, 177, 375, 523
MroI TCCGGA 2 cut(s) 750, 898
MroXI GAANNNNTTC 1 cut(s) 746
MseI TTAA 8 cut(s) 116, 120, 153, 476, 542, 576, 834, 891
MspA1I CMGCKG 1 cut(s) 107
MspCI CTTAAG 1 cut(s) 833
MspI CCGG 3 cut(s) 675, 751, 899
MspR9I CCNGG 4 cut(s) 37, 382, 676, 727
Mva1269I GAATGC 2 cut(s) 441, 1094
MvaI CCWGG 3 cut(s) 37, 382, 727
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 676
NdeI CATATG 1 cut(s) 1077
NdeII GATC 2 cut(s) 267, 699
NlaIII CATG 2 cut(s) 506, 809
NlaIV GGNNCC 2 cut(s) 269, 562
NmeAIII GCCGAG 1 cut(s) 385
NspI RCATGY 1 cut(s) 809
PacI TTAATTAA 1 cut(s) 120
PaeR7I CTCGAG 1 cut(s) 248
PceI AGGCCT 1 cut(s) 158
PciSI GCTCTTC 2 cut(s) 429, 431
PctI GAATGC 2 cut(s) 441, 1094
PdmI GAANNNNTTC 1 cut(s) 746
PfeI GAWTC 4 cut(s) 92, 259, 347, 385
PfoI TCCNGGA 1 cut(s) 674
PkrI GCNGC 3 cut(s) 148, 570, 804
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 891
Psp6I CCWGG 3 cut(s) 35, 380, 725
PspFI CCCAGC 2 cut(s) 187, 863
PspGI CCWGG 3 cut(s) 35, 380, 725
PspN4I GGNNCC 2 cut(s) 269, 562
PspPI GGNCC 2 cut(s) 39, 416
PstNI CAGNNNCTG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 267
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 1 cut(s) 1016
RsaNI GTAC 1 cut(s) 1015
SapI GCTCTTC 2 cut(s) 429, 431
SaqAI TTAA 8 cut(s) 116, 120, 153, 476, 542, 576, 834, 891
SatI GCNGC 3 cut(s) 147, 569, 803
Sau3AI GATC 2 cut(s) 267, 699
Sau96I GGNCC 2 cut(s) 39, 416
ScaI AGTACT 1 cut(s) 1016
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 4 cut(s) 37, 382, 676, 727
Sfr274I CTCGAG 1 cut(s) 248
SinI GGWCC 1 cut(s) 416
SlaI CTCGAG 1 cut(s) 248
SmlI CTYRAG 3 cut(s) 218, 248, 833
SmoI CTYRAG 3 cut(s) 218, 248, 833
Sse9I AATT 5 cut(s) 117, 276, 632, 670, 973
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 3 cut(s) 147, 394, 803
SspMI CTAG 1 cut(s) 597
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 4 cut(s) 35, 380, 674, 725
StyI CCWWGG 1 cut(s) 938
TaqI TCGA 3 cut(s) 249, 294, 589
TaqII GACCGA 1 cut(s) 404
TasI AATT 5 cut(s) 117, 276, 632, 670, 973
TatI WGTACW 1 cut(s) 1014
TauI GCSGC 2 cut(s) 149, 805
TfiI GAWTC 4 cut(s) 92, 259, 347, 385
Tru1I TTAA 8 cut(s) 116, 120, 153, 476, 542, 576, 834, 891
Tru9I TTAA 8 cut(s) 116, 120, 153, 476, 542, 576, 834, 891
TscAI CASTG 1 cut(s) 865
TseI GCWGC 1 cut(s) 568
TspDTI ATGAA 5 cut(s) 201, 673, 749, 999, 1077
TspRI CASTG 1 cut(s) 865
Vha464I CTTAAG 1 cut(s) 833
VpaK11BI GGWCC 1 cut(s) 416
VspI ATTAAT 1 cut(s) 891
XapI RAATTY 3 cut(s) 276, 632, 670
XceI RCATGY 1 cut(s) 809
XhoI CTCGAG 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 846
XmnI GAANNNNTTC 1 cut(s) 746
XspI CTAG 1 cut(s) 597
ZrmI AGTACT 1 cut(s) 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.